New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	1437201 =	28 (0.750)	3 (0.080)	3/250	NT	10.3%	noncoding (81/109 nt)	micC	small regulatory RNA MicC
	?	NC_000913	1437225 =	26 (0.730)					noncoding (105/109 nt)	micC	small regulatory RNA MicC

ATACTTTTAATTTGCTATACGTTATTCTGCGCGGGTTATATGCCTTTATTGTCACAGATTTTATTTTCTGTTGGGCCATTGCATTGCCACTGATTTTCCAACATATAAAAAGACAAGCCCGAACAGTCGTCCGGGCTTTTTTTTTAGAATTGGATAATCCTTATCCAGAGCATTTAATCGGTGTTGCTTTTTTCCGCTTTTCCGGCCATTTGTGCCAGGAAGTCATAGCGTTTTTGCAAATCAGCTGCAGCATCTTTCCATAACTGTTCTGCCACTTCTGG  >  NC_000913/1437087‑1437367                                                                                                                                           |                                                                                                                                               ataCTCTGAATTGGCTATACGTTAGGCGGCGCGGGTTATATGCCTTTATTGTCACAGATTTTATGTTCTGTTGGGCAATTGAACTGCCACTGATTTTCCAACATATAAAAAGACAAGCCCGAACAGTCGTCCGGGCttttttt                                                                                                                                            <  1:141160/143‑1 (MQ=255)   aCTTTTAATTTGCTATACGTTATTCTGCGCGGGTTATATGACTTTATTGTCACAGATTTTATTTTCTGTTGGGCCATTGCATTGCCACTGATTTTCCAACATATAAAAAGACAAGCCCGAACAGTCGTCCGGGCttttttttt                                                                                                                                          <  1:698647/143‑1 (MQ=255)     ttttAATTTGCTATACGTTATTCTGCGCGGGTTATATGCCTTTATTGTCACAGATTTTATTTTCTGTTGGGTCATTGCATTGCCACTGATTTTCCAACATATAAAAAGACAAGCCCGAACAGTCGTACGGGCTTTTTTTTTat                                                                                                                                        >  2:189189/1‑142 (MQ=255)         ctgatttgcaaaaacgctatgacttcctggcacaaatggccggaaaagcggaaaaaagcaacaccgattaaatgctctggataaggattatccaattctaaaaaaaaagcccggacgactgttcgggcttTTTTTTTAGAAtt                                                                                                                                    <  2:247406‑M2/13‑1 (MQ=255)         aaTTTTCTATACGTTTTTCTTCTCTGGTTATTTGCCTTTATGGTCACACATTTTATTTTCTGTTGGGCCATTGCATTTCCACTGTTTTTGCAACATATAAAAAGACAAGCCCGAACAGTCGTCCGGGCTTTTTTTTTAGAAtt                                                                                                                                    <  2:47684/143‑1 (MQ=255)         aaTTTGCTATACGTTATTCTGCGCGGGTTATATGCCTTTATTGTCACAGATTTTATTTTCTGTTGGGCCATTGCATTGCCACTGATTTTCCAACATATAAAAAGACAAGCCCGAACAGTCGTCCGGGCTTTTTTTTTAGAAtt                                                                                                                                    <  2:344654/143‑1 (MQ=255)                    cGTTATTCTGCGCGGGTTATATGCCTTTATTGTCACAGATTTTATTTTCTGTTGGGCCATTGCATTGCCACTGATTTTCCAACATAAAAACAGACAAGCCCGAACAGGCGTCCGGGCTTTTTTTTTAGAATTAGATAATCCtt                                                                                                                         >  2:666681/1‑143 (MQ=255)                           ttGCGCGGTTTATTGGCGTTTAGTTTCACAGGTTGTATTTTCGGTTGGGCTATTTCATGGCCAGTGATTTTACAACATATAAAAAGACAAGCGCGAACTGTCGTCCGGGCTTTTTTTTTAGAATTGGATAATCCTTATCCaga                                                                                                                  <  2:11143/142‑1 (MQ=255)                           gtGCGCGTCTTATTTTCCTTTATTGTCACATATTTTATTTTTTGTTGTGCCATTGCATTGCCACTTATTTTCCAACATATAAAAAGACAAGCCCGAACATTCGTCCTGGCTTTTTTTTTAGAATTGGATAATCCTTATCCaga                                                                                                                  <  2:356056/142‑1 (MQ=255)                            tGCGCGGGTTATATGCCTTTATTGTCACAGATTTTATTTTCTGTTGGGCCATTGCATTGCCACTGATTTTCCAACATATAAAAAGACAAGCCCGAACAGTCGTCCGGGCTTTTTTTTTAGAATTAGATAATCCTTATCCagag                                                                                                                 >  2:177263/1‑143 (MQ=255)                            tGCGCGGGTTATATGCCTTTATTGTCACAGATTTTATTTTCTGTTGGGCCATTGCATTGCCACTGATTTTCCAACATATAAAAAGACAAGCCCGAACAGTCGTCCGGGCTATTTTTTTAAAATTGGATAATCCTTATCCagag                                                                                                                 <  2:674192/143‑1 (MQ=255)                              cgcgGGTTATATGCCTTTATTGTCACAGATTTTATTTTCTGTTGGGCCATTGCATTGCCACTGATTTTCCAACATATAAAAAGACAAGCCCGAACAGTCGTCCGGGCTTTTTTTTTAGAATTAGATAATCCTTCTCCAGAGcc                                                                                                               >  2:142331/1‑142 (MQ=255)                                      atatGCCTTTATTGTCACAGATTTTATTTTCTGTTGGGCCATTGCATTGCCACTGATTTTCCAACATATAAAAAGACAAGCCCGAACAGTCGTCCGGGCTTTTTTTTTAGAATTGGATAATCCTTATCCAGAGCATTTAATCg                                                                                                       <  2:69828/143‑1 (MQ=255)                                         tGCCTTTATTGTCACAGATTTTATTTTCTGTTGGGCCATTGCATTGCCACTGATTTTCCAACATATAAAAAGACAAGCCCGAACCGTCGTCCGGGCTTTTTTTTTAGAATTTGATAATCCTTATCAAAAGACTATAATAGgtg                                                                                                    >  1:38201/1‑143 (MQ=255)                                            cTTTATTGTCACAGATTTTATTTTCTGTTGGGCCATTGCATTGCCACTGATTTTCCAACATATAAAAAGACAAGCCCGAAAAGTCGTCCGGGCTGTTTTTTTAAAATTGAATAGACATTATACAGAGCAGTTAAACGATGTTg                                                                                                 >  2:482361/1‑143 (MQ=255)                                                    tCACGGATGTTATTTTCTGTTGGGCCATTGCATTGCCACTGATTTTCCAACATATAAAAAGACAAGCCCGAACAGTCGTCCGGGCTTTTTTTTTAGAATTGGATAATCCTTATCCAGAGCATTTAATCGGTGTTGCTTTTTTc                                                                                         <  1:386965/143‑1 (MQ=255)                                                    tCACAGATTTTATTTTCTGTTGGGCCATTGCATTGCCACTGATTTTCCAACATATAAAAAGACAAGCCCGAACAGTCGTCCGGGCTTTTTTTTTAGAATTGGATAATCCTTATCCAGAGCATTCAATCGGTGTTGCTTTTTTc                                                                                         >  2:761020/1‑143 (MQ=255)                                                    tCACAGATTTTATTTTCTGTTGGGCCATTGCATTGCCACTGATTGTCCAACATATAAAAAGACAAGCCCGAACAGTCTTCCCGGCTTTTTTTTTCCCATTCGCTACTCCTTCTCCATCGCATTTAATCGGTGTTACtctttta                                                                                         >  1:242946/1‑142 (MQ=255)                                                      acaGATTTTATTTTCTGTTGGGCCATTGCATTGCCACTGATTTTCCAACATATAAAAAGACAAGCCCGAACAGTCGTCCGGGCTTTTTTTTTATAATTTGATTATCCTTATTCAGAGCATTTAATCGGTGTTGCttttttact                                                                                       >  1:591492/1‑140 (MQ=255)                                                          ggaaaaaagcaacaccgattaaatgctctggataaggattatccaattctaaaaaaaAAGCCCGAACAGTCGTCCGGGCttttt                                                                                                                                              >  2:261532‑M1/58‑84 (MQ=255)                                                          ggaaaaaagcaacaccgattaaatgctctggataaggattatccaattctaaaaaaaAAGCCCGAACAGTCGTCCGGGCttttt                                                                                                                                              <  1:261532‑M1/27‑1 (MQ=255)                                                               attttCTGTTGGGCCATTGCAGTGCCACTGATTTTCCAACATATAAAAAGACAAGCCCGAACAGTCGTCCGGGCTTTTTTTTTAGAATTGGATAATCCTTATCCAGAGCATTTAATCGGTGTTGCTTTTTTCCGCTTTTCCgg                                                                              <  2:34591/143‑1 (MQ=255)                                                                 tttCTGTTGGGCCATTGCATTGCCACTGATTTTCCAACATATAAAAAGACAAGCCCGAACAGTCGTCCGGGCTTTTTTTTTAGAATTGGATAATCCTTATCCAGAGCATTTAATCGGTGTTGCTTTTTTCCGCTTTTCCGGcc                                                                            >  1:274544/1‑143 (MQ=255)                                                                           gCCATTGCATTGACACTTATTTTCCAACATATAAAAAGACAAGCCCGAACAGTCGTCCGGGCTTTTTCTTTAGAATTGGATAATCCTTATCCACAGCATTTACCCCGTGTCGCTCTTTTCCGCTTCTCCGGCGATTTGTGccc                                                                  >  2:631050/1‑142 (MQ=255)                                                                                                     ccagataAGAAGATAAGCCCGAACAGTCGTCCGGGCTTTTTTTTTAGAATTGGATAATCCTTATCCAGAGCATTTAATCGGTGTTGCTTTTTTCCGCTTTTCCGGCCATTTGTGCCAGGAAGTCATAGCGTTTTTGCAAATCa                                        <  2:449033/139‑1 (MQ=255)                                                                                                      aattctaaaaaaaAAGCCCGAACAGTCGTCCGGGCTTTTTTTTTAGAATTGGATAATCCTTATCCAGAGCATTTAATCGGTGTTGCTTTTTTCCGCTTTTCCGGCCATTTGTGCCAGGAAGTCATAGCGTTTTTGCAAATCAg                                       <  2:247406‑M1/130‑1 (MQ=255)                                                                                                         ataAAAAGAGAAGCCCGAACAATCGTCCGGGCTTTTTTTTTAGAATTGGATAATCCTTATCCAGAGCATTTAATCGGTGTTGCTTTTTTCCGCTTTTCCGGCCATTTGTGCCAGGAAGTCATAGCGTTTTTGCAAATCAGCTg                                    <  1:482085/143‑1 (MQ=255)                                                                                                           aaaaaGACAAGCCCGAACAGTCGTCCGGGCTTTTTTTTTAGAATTGGATAATCCTTATCCAGAGCATTTAATCGGTGTTGCTTTTTTCCGCTTTTCCGGCCATTTGTGCCAGGAAGTCATAGCGTTTTTGCAAATCAGCTgca                                  >  1:226605/1‑143 (MQ=255)                                                                                                                tgatAGCCCGGACAGTCGTTCGGGCTTTTTTTTTAGAATTGGTTAATCCTTATCCAGAGCATTTAATCGGTGTTGCTTTTTTCCGCTTTTCCGGCCATTTGTGCCAGGAAGTCATAGCGTTTTTGCAAATCAGCTGCAGCATc                             >  2:78094‑M1/5‑143 (MQ=255)                                                                                                                aaaaagcccggacgactgttcgggcttTTTTTTTAGAATTGGATAATCCTTATCCAGAGCATTTAATCGGTGTTGCTTTTTTcc                                                                                        >  2:261532‑M2/28‑84 (MQ=255)                                                                                                                aaaaagcccggacgactgttcgggcttTTTTTTTAGAATTGGATAATCCTTATCCAGAGCATTTAATCGGTGTTGCTTTTTTcc                                                                                        <  1:261532‑M2/57‑1 (MQ=255)                                                                                                                           actgtcgtcCGGGCTTTTTTTTTAGAATTGGATAATCCTTATCCAGAGCATTTAATCGGTGTTGCTTTTTTCCGCTTTTCCGGCCATTTGTGCCAGGAAGTCATAGCGTTTTTGCAAATCAGCTGCAGCATCTTTCCATAACt                  <  2:88301/140‑1 (MQ=255)                                                                                                                           aCAGTCGTCCGGGCTTTTTTTTTAGAATTTGATAATCCTTATCCAGAGCATTTAATCGGTTTTGCTTTTTTCCGCTTTTCCGGCCATTTGTGCCCGGTAGTCATTGCTGTTTTGCCAATCAGCTTCAGCCTCTTTCCATCACt                  >  2:677159/1‑143 (MQ=255)                                                                                                                             aGTCGTCCGGGCTTTTTTTTTAGAATTGGATAATCCTTATCCAGAGCATTTAATCGGTGTTGCTTTTTTCCGCTTTTCCGGCCATTTGTGCCAGGAAGTCATAGCGTTTTTGCAAATCAGCTGCAGCATCTTTCCATAACTGt                <  1:247406/143‑1 (MQ=255)                                                                                                                                cgcccGGGCTTTTTGTTCAGAATTGGATAATCCTTATCCAGAGCATTTAATCGGTGTTGCGTTTTTCCGCTTTCCCGGCCATTTGTGCCAGGAAGTCATAGCGTTTTTGCAAATCAGCTGCAGCATCTTTCCATAACTGTTCt             <  1:166126/140‑1 (MQ=255)                                                                                                                                           tttttttAGAATTGGATAATCCTTATCCAGAGCATTTAATCGGTGTTGCTTTTTTCCGCTTTTCCGGCCATTTGTGCCAGGAAGTCATAGCGTTTTTGCAAATCAGCTGCAGCATCTTTCCATAACTGTTCTGCCACTTCTgg  <  1:480542/143‑1 (MQ=255)                                                                                                                                           |                                                                                                                                               ATACTTTTAATTTGCTATACGTTATTCTGCGCGGGTTATATGCCTTTATTGTCACAGATTTTATTTTCTGTTGGGCCATTGCATTGCCACTGATTTTCCAACATATAAAAAGACAAGCCCGAACAGTCGTCCGGGCTTTTTTTTTAGAATTGGATAATCCTTATCCAGAGCATTTAATCGGTGTTGCTTTTTTCCGCTTTTCCGGCCATTTGTGCCAGGAAGTCATAGCGTTTTTGCAAATCAGCTGCAGCATCTTTCCATAACTGTTCTGCCACTTCTGG  >  NC_000913/1437087‑1437367

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.