Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_000913 | 4,159,147 | C→G | 16.9% | R220G (CGC→GGC) | oxyR → | DNA‑binding transcriptional dual regulator OxyR |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_000913 | 4,159,147 | 0 | C | G | 16.9% | 88.6 / 9.6 | 45 | R220G (CGC→GGC) | oxyR | DNA‑binding transcriptional dual regulator OxyR |
Reads supporting (aligned to +/- strand): ref base C (19/18); new base G (2/6); total (21/24) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 2.52e-01 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.79e-01 |
TCACCCGTGGGCGAACCGCGAATGCGTACCGATGGCCGATCTGGCAGGGGAAAAACTGCTGATGCTGGAAGATGGTCACTGTTTGCGCGATCAGGCAATGGGTTTCTGTTTTGAAGCCGGGGCGGATGAAGATACACACTTCCGCGCGACCAGCCTGGAAACTCTGCGCAACATGGTGGCGGCAGGTAGCGGGATCACTTTACTGCCAGCGCTGGCTGTGCCGCCGGAGCGCAAACGCGATGGGGTTGTTTATCTGCCGTGCATTAAGCCGGAACCACG > NC_000913/4159005‑4159283 | tCACCCGTGGGCGAACCGCGAATGCGTACCGATGGCTTATCTGGCAGGTGAAAAACTGCTGATGCTGGAAGATGGTCACTGTTTGCGCGATCAGGCAATGGGTTTCTGTTTTGAAGCCGGGGCGGATGAAGATACACACTTcc < 1:178998/143‑1 (MQ=255) gTGGGCGGACCGCGAATGCGTACCGATGGCCGATCTGGCAGGGGAAAAACTGCTGATGCTGGAAGATGGTCACTGTTTGCGCGATCAGGCAATGGGTTTCTGTTTTGAAGCCGGGGCGGATGAAGATACACACTTCCGCGCGa < 2:483009/143‑1 (MQ=255) gCGAGCCGCGAATGCGTACCGATGGCCGATCTGGCAGGGGAAAAGCTGCTGATGCTGGAAGATGGTCACTGGTTGCGCGATCAGGCAATGGGTTTCTGTTTTGAAGCCGGGGCGGATGAAGATACACACTTCCGCGCGACCAg < 2:757951/143‑1 (MQ=255) gCGAACCGCGAATGCGTATCGATGGTCGTTCTGGCAGGGGAAAAACTGCTGATGCTGGAAGATGGTCACTGTTTGCGCGATCAGGCAATGGGTTTCTGTTTTGAAGCCGGGGCGGATGAAGATACACACTTCCGCGCGACCAg < 1:629968/143‑1 (MQ=255) gAACCGCGAATGCGTAACGATGGCCGATCTGGCAGGGGCAACACTGCTGATGCTGGAAGATGGTCACTGTTTGCGCGATCAGGCCATGGGTTTCTGTTTTGAAGCCGGGGCGGATGAAGATACCCACTCCCGCGCGACCAgac > 1:543611/1‑141 (MQ=255) cgcgAATGCTTACCGATGGCCGATCTGGCAGGGGAAAAACGGCTGATGCTGGAAGATGGTCACTGTTTGCGCGATCAGGCAATGGGTTTCTGTTTTGAAGCCGGGGCGGATGAAGATACACACTTCCGCGCGACCAGCCTGGa < 1:89339/143‑1 (MQ=255) cgcgAATGCGTACCGATGGCCGATCTGGCAGGGGAAAAACTGCTGATGCTGGAAGATGGTCACTGTTTGCGCGATCAGGCAATGGGTTTCTGTTTTGAAGCCGGGGCGGATGAAGATACACACTTCCGCGCGACCAGCCTGGa > 1:253382/1‑143 (MQ=255) cggaTGCGTACCGATGGCCGATCTCGCAGCGGAAATACCGCTGATGCTCTAAGATTGTTACTGTTTGCGCGATCAGGCAATGGGTTTCTGTTTTGCAGCCGGGGCGGATGAAGATACACACTTCCGCGCGACCAGCCTGGaaa < 2:28352/140‑1 (MQ=255) cgAATGCGTACCGATGGCCGATCTGGCAGGGGAAAAACTGCTGATGCTGGAAGATGGGCACTGTTTGCGCGATCAGGCAATGGGTTTCTGGTTTGAAGCCGGGGCGGATGAAGATACACACTTCCGCGCGACCAGCCTGGaaa < 1:534159/143‑1 (MQ=255) tgTACCGTTTGTCGATCTGGCAGGGGAAAAATTGCTGATGCTGGAAGATGGTCACTGTTTGCGCGATCAGGCAATGGGTTTCTGTTTTGAAGCCGGGGCGGATGAAGATACACACTTCGGCGCGACCAGCCTGGAAACTCTgc < 1:430257/142‑1 (MQ=255) ccGATGGTCGATCTGGTAGGGTATAAACTTCTGATGCTGGAAGATGGTCACTGTTTGCGCGATCAGGCAATGGGTTTCTGTTTTGAAGCCGGGGCGGATGAAGATACACACTTCCGCGCGACCAGCCTGGAAACTCTGCGCaa < 1:228588/143‑1 (MQ=255) gCAGGGGAAAAGCTGCTGATGCTGGAAGATGGTCACTGTTTGCGCGTTCGTTCACTTTGCATCTGTTTTGAAGCCGGGGCGGATGAAGATACACACTTCCGCGCGACCAGCCTGGAAACTCTGCGCAACATGGTGGCGGCAgg < 1:557819/143‑1 (MQ=255) gCAGGGGAAAAACTGCTGATGCTGGAAGATGGTCACTGTTTGCGCGATCAGGCAATGGGTTTCTGTTTTGAAGCCGGGGCGGATGAAGATACACTCTTCCGCGCGACCAGCCTGGAGTCTCTGCGCTATCTGGTGGGGGCAgg > 1:244950/1‑143 (MQ=255) gCAGGGGAAAAACTGCTGATGCTGGAAGATGGTCACTGTTTGCGCGATCAGGCAATGGGTTTCTGTTTTGAAGCCGGGGCGGATGAAGATACACACTTCCGCGCGACCAGCCTGGAAACTCTGAGCAACATGGTAGCGGCAgg > 1:32387/1‑143 (MQ=255) aGGGGAAAAACTGCTGATGCTGGAAGATGGTCACTGTTTGCGCGATCAGGCAATGGGTTTCTGTTTTGAAGCCGGGGCGGATGAAGATACACACTTCCGCGCGACCAGCCTGGAGACTCTGCGCAACATGGTGGCGGCAGGTa > 2:386701/1‑143 (MQ=255) gAAAAACTGCTGATGCTGGAAGATGGTCACTATTTGCGCGATCAGGCAATGGGTTTCTGTTTTGAAGCCGAGGCGGATGAAGATACACACTTCCGCGCGACCAGCCTGGAAACTCTGCGCAACATGGTGGCGGCAGGTAGCgg > 2:227871/1‑143 (MQ=255) gAAAAACTGCTGATGCTGGAAGATGGTCACTATTTGCACAATCAGGCAATGGGTTTCTGCTTTGAAGCCGGGGCGGATGAACATACACACTTCCGCGAGAACAGCCTGGAAACTCTGCGCAACATGGTGGTGGCAGGAAGCgg > 2:228161/1‑143 (MQ=255) aaaaaCTGCTGATGCTGGAAGATGGTCACTGTTTGCGCGATCAGGCAATGGGTTTCTGTTTTGAAGCCGGGGCGGATGAAGATACACACTTCCGCGCGACCAGCCTGGAAACTCTGCGCAACACGATAGCGGCAGGGAGCggg > 2:486142/1‑143 (MQ=255) tgctgATGCTGGAAGATGGTCACTGTTTGCGCGATCAGGCAATGGGTTTCTGTTTTGAAGCCGGGGCGGATGAAGATACACACTTCCGCGCGACCAGCCTGGCAACTCTGCGCAACATGGTGGCGGCAGGTAGCGGGATCACt > 1:676357/1‑143 (MQ=255) aTGCTGGAAGATGGTCACTGTTGGCGCGATCAGGCAATGGGTTTCTGTTTTGAAGCCGGGGCGGATGAAGATACACACTTCCGCGCGACCAGCCTGGAAACTCTGCGCAACATGGTGGCGGCAGGTAGCGGGATCACTTTACt < 1:627092/143‑1 (MQ=255) cTGGAAGATGGTCACTGTTTGCGCGATCAGGCAATGGGTGTCTGTTTTGAAGCCGGGGCGGATGAAGATACACACTTCCGCGCGACCAGCCTGGAAACTCTGCGCAACATGGTGGCGGGAGGTAGCGGGGTCGTTTTACTGcc > 1:55224/1‑143 (MQ=255) tgtaaGTTGGTAACTGGTGGCGCGGTTATGCTATGGGTTTCTTTTTTGAAGCCGGGTCTGATGAAGATACACACTTCCGCGCGACCAGCCTGGAAACTCTGCGCAACATGGTGGCGGCAGGTAGCGGGATCACTTTACTGCCa < 2:613292/140‑1 (MQ=255) tGGAAGATGGTCACTGTTTGCGCGATCAGGCAATGGGTTTCTGTTTTGAAGCCGGGGCGGATGAAGATACACACTTCCGCGCGACCAGCCTGGAAACTGTGCGCAACATGGTGGCGGCAGGTAGCGGGATCACTTTACTGCCa > 2:284613/1‑143 (MQ=255) ggAATATGGGCGCTGTTTGCACGATCAGGCGACGGGGTTCTGTGTTGAAGTCGGGGCGGAGTAAGCTACACAGTTCCGCGCGACCAGCCTGGGAACTGTGCGCAACATGGTGGCGGCAGGTAGCGGGATCACTTTACTGCCAg < 2:239022/143‑1 (MQ=255) ggAAGATGGTCACTGTTTGCGCGATCAGGCAATGGGTTTCTGTTTTGAAGCCGGGGCGGATGAAGATACACACTTCCGCGCGACCAGCCTGGAAACTCTGCGCAACATGGTGGCGGCAGGTAGCGGGATCCCTTTACTGCCAg > 1:701600/1‑143 (MQ=255) ggTCCCTCTTTGCTCTATCACGCAATGGGTTTCTCTTTTGAAGCCGGGGCGGATGAAGATACACACTTCGGCGCTACCAGCCTGGAAACTCTGCGCAACATGGTGGCGGCAGGTAGCGGGATCACTTTACTGCCAGCgctggc < 2:446564/143‑1 (MQ=255) ggTCACTGTGTGCGCGATCAGGCAATGGGTTTCTGTTTTGAAGCCGGGGCGGATGAAGATACACACTTCGGCGCGACCAGCCTGGAAACTCTGCGCAACATGGTGGCGGCAGGTAGCGGGATCACTTTACTGCCAGCgctggc < 2:599697/143‑1 (MQ=255) tcccTGTCTGCGCGATCAGGCAATGGGTTGCTGTTTTGAACCCGGGGCGGATGAAGATACACCCTTCGGCGCGACCAGCCTGGATACTCTGCGCAACATGGTGGCGGCAGGTAGCGGGATCACTTTACTGCCAGCgctggctg < 2:472711/140‑1 (MQ=255) tggcgcGATCAGGCAATGGGTTTCTGTGTTGAAGCCGGGGCGGATGAAGATACACACTTCCGCGCGACCAGCCTGGAAACTCTGCGCAACATGGTCGCGGCAGGTAGCGGGATCACTTTACTGCCAGCGCTGGCTGTgccgcc < 1:735469/141‑1 (MQ=255) tGCGCGATCAGGCAATGGGTTTCTGTTTTGAAGCCGGGGCGGATGAAGATACACACTTCGGCGCGACCAGCCTGGAAACTCTGCGCAACATGGTGGCGGCAGGTAGCGGGATCACTTTACTGCCAGCGCTGGCTGTGccgccg > 1:218112/1‑143 (MQ=255) cgATCTGGCAATGGGTTTCTGTTTTGAAGCCGGGGTGGATGAAGATACACACTTCCGCGCGACCAGCCTGGAAACTCTGCGCAACATGGTGGCGGCAGGTAGCGGGATCACTTTACTGCCAGCGCTGGCTGTGCCGCCGGAgc < 2:148488/143‑1 (MQ=255) aTCAGGCAATGGGTTTCTGTTTTGAAGCCGGGGCGGATGAAGATACACACTTCCGCGCGACCAGCCTGGAAACTCTGCGCAACATGGTGGCGGCCGGTAGCGGGATCACTTCACTGCCAGCGCTCGCTGTGCCGCCGGAgcgc > 2:725528/1‑143 (MQ=255) aGGCAATGGGTTTCTGTTTTGAAGCCGGGGCGGATGAAGATACACACTTCCGCGCGACCAGCCTGGAAACTCTGCGCAACATGGTGGCGGCAGGTAGCGGGATCACTTTACTGCCAGCGCTGGCTGTGCCGCCGGAGCGCaaa < 1:503228/143‑1 (MQ=255) aTGGGTTTCTGTTTTGAAGCCGGGGCGGATGAAGATACACACTTCCGCGCGACCAGCCTGGAAACTCTGCGCAACATGGTGGCGGCAGGTAGCGGGAGCACTTTACTGCCAGCGCTGGCTGTGCCGCCGGAGCGCAAACGCGa > 2:349315/1‑143 (MQ=255) gAAGCCGGGGCGGATGAAGATACACACTTCCGCGCGACCAGCCTGGAAACTCTGCGCAACATGGTGGCGGCAGGTAGCGGGATCACTTTACTGCCAGCGCTGGCTGTGCCGCCGGAGCGCAAACGCAATGGGGATGATTAACt > 1:718156/1‑143 (MQ=255) aGCCGGGGCGGATGAAGATACACACTTCCGCGCGACCAGCCTGGAAACTCTGCGCAACATGGTGGCGGCAGGTAGCGGGATCACTTTACTGCCAGCGCTGGCTGTGCCGCCGGCGCGCAAACCCGGTGGGGTTGATTATGTGc > 2:575301/1‑143 (MQ=255) ccGGGGCGGATGAAGATACACACTTCGGCGCGACCAGCCTGGAAACTCTGCGCAACATGGTGGCGGCAGGTAGCGGGATCACTTTACTGCCAGCGCTGGCTGTGCCGCCGGAGCGCAAACGCGATGGGGCTGTCTATCTGCCg > 2:142689/1‑143 (MQ=255) tgATGCATATACACTCTTTCGCGCGACCAGCTTGGAAACTCTGCGCAACATGGTGGCGGCAGGTAGCGGGATCACTTTACTGCCAGCGCTGGCTGTGCCGCCGGAGCGCAAACGCGATGGGGTTGTTTATCTGCCGTGCATTa < 1:458619/142‑1 (MQ=255) ggATGAAGATACCAACTTCCGCGCTACCAGTCTGGAAACTCTCCGCAACATGGTGGCGGCAGGTAGCGGGATCACTTTACTGCTAGCGCTGGTTGTGCCGCCGGAGCGCAAACGCGATGGGGTTGTTTATCTGCCGTGCATTa < 2:94468/143‑1 (MQ=255) tGAAGTTACACACTGTGGGGCGACCAGCCTGGAAACTCTGCGCAACATGGTGGCGGCAGGTAGCGGGATCACTTTGCTGCCAGCGCTGGCTGTGCCGCCGGAGCGCAAACGCGATGGGGTTGTTTATCTGCCGTGCATTAAGc < 2:382559/143‑1 (MQ=255) gAATATACACACTTTGGCGCGACCAGCCTGGAAACTCTGCGCAACATGGTGGCGGCAGGTAGCGGGATCACTTTACTGCCAGCGCTGGCTGTGCCGCCGGAGCGCAAACGCGATGGGGTTGTTTATCTGCCGTGCATTAAGcc < 1:408033/143‑1 (MQ=255) gATACACACTTCCGCGCGACCAGCCTGGAAACTCTGCGCAACATGGTGGCGGCAGGTAGCGGGATCACTTTACTGCCAGCGCTGGCTGTGCCGCCGGAGCGCAAACGCGATGGGGTTGTTTATCGGCCGTGCATTAAGCCGGa > 2:457594/1‑143 (MQ=255) ctgcactcTTCCGCGCGTCCAGCCTGGACTCTCTGCGCAACATGGTGGCGGCAGGTAGCGTTATCACTTTACTGCCAGCGCTGGCTGTGCCGCCGGAGCGCAAACGCGATGGGGTTGTTTATCTGCCGTGCATTAAGCCGGaa < 2:96589/140‑1 (MQ=255) acacTTCCGCGCGACCAGCCTGGAAACTCTGCGCAACATGGTAGCGACAGGTAGCGGGATCACTTTACTGCCAGCGCTGGCTGTGACGCCGGAGCGCAAACGCGAAGGAGTTGTTTATCTGCCGTGCATTAAACCGGAAacac > 2:7551/1‑143 (MQ=255) cgcgtCCGCGCGACCAGCCTGGACACTCTGCGCAACATGGTGGCGGCAGGTAGCGGGATCACTTTACTGCCAGCGCTGGCTGTGCCGCCGGAGCGCAAACGCTATGGGGTTGTTTATCTGCCGTGCATTAAGCCGGAACCAct < 2:150580/139‑2 (MQ=255) cacTTCCGCGCGACCAGCCTGGAAACTCTGCGCAACATGGTGGCGGCAGGTAGCGGGATCACTTTACTGCCAGCGCTGGCTGTGCCGCCGGAGCGCAAACGCGATGGGGTTGTTTATCTGCCGTGCATTAAGCCGGAACCAcg > 1:489900/1‑143 (MQ=255) | TCACCCGTGGGCGAACCGCGAATGCGTACCGATGGCCGATCTGGCAGGGGAAAAACTGCTGATGCTGGAAGATGGTCACTGTTTGCGCGATCAGGCAATGGGTTTCTGTTTTGAAGCCGGGGCGGATGAAGATACACACTTCCGCGCGACCAGCCTGGAAACTCTGCGCAACATGGTGGCGGCAGGTAGCGGGATCACTTTACTGCCAGCGCTGGCTGTGCCGCCGGAGCGCAAACGCGATGGGGTTGTTTATCTGCCGTGCATTAAGCCGGAACCACG > NC_000913/4159005‑4159283 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |