New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 1207805	22 (0.350)	28 (0.510)	24/250	1.6	54.1%	coding (305/630 nt)	ycfK	e14 prophage; protein StfP
	?	NC_000913	= 1209602	28 (0.510)					pseudogene (54/537 nt)	stfE	e14 prophage; putative side tail fiber protein fragment

GCAATTTATTTGTCGGATAAGCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAACGTAA  >  NC_000913/1209466‑1209743                                                                                                                                         |                                                                                                                                              gCAATTTATTTGTCGGATAAGCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAGGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttct                                                                                                                                         <  1:670090‑M2/143‑7 (MQ=255)   aaTTTATTTGTCGGATAAGCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcc                                                                                                                                       <  2:522917‑M2/143‑9 (MQ=255)   aaTTTATTTGTCGGATAAGCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCAACATTGCATTTCAGCCAGCCTGTTGGAGGAGTGGCTGAAGGCCACGGAACCGAGACACCAACAGGTAATGGAGAGccgactcc                                                                                                                                       <  1:819707‑M2/143‑9 (MQ=255)    atttatttGTCGGATAAGCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctccc                                                                                                                                      >  1:325405‑M2/1‑134 (MQ=255)      ttatttGTCGCAGAAGCCCTGCCCAGTGCCGTGTAGTCTTCAGCGGAAAAAGCGGCACCAGTGCATTTCAGCCGGCCTGTTGGCCGAGTGGCTGAAGCCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaa                                                                                                                                    >  2:1061395‑M2/1‑132 (MQ=255)          ttGTCGGATAAGCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGGCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACGAACAGGTAGTGCAGAGccttctccaaaacca                                                                                                                                <  2:772787‑M2/143‑16 (MQ=255)          ttGTCGGATAAGCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAAGGCAGAGccttctcccaaacca                                                                                                                                <  1:141847‑M2/143‑16 (MQ=255)            gTCGTATAACCCTTTGCCAGTGCGGGGTATTCTTCAGCAGCAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTGGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCACCTGTTATTGCAGAGCCTTCTCCCAAACCAAc                                                                                                                              <  2:1007784/143‑1 (MQ=255)             tCGGATAAGCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaagg                                                                                                                             <  1:442615‑M2/143‑19 (MQ=255)               ggATAAGCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAGGGCCACGGACCCGGGACACCAACAGGTAATGCAGAGccgtctaccaaaaaaaggtt                                                                                                                           <  1:425894‑M2/143‑21 (MQ=255)                      ccTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGACGGCCACGGAACCGGGACACCAACAGGTAATGCAGGGccatctcccgaaccaagggtctcgagc                                                                                                                    <  2:671937‑M2/143‑28 (MQ=255)                      ccTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGaaa                                                                                                                    >  1:52515/1‑143 (MQ=255)                       cTTTGCCAGTCCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGaaaa                                                                                                                   <  1:1098400/143‑1 (MQ=255)                                  gtggttATTCTTCATCAGAGAAAGGGGCACCAGTGCATTTCAGCCAGCCTGTTGGCGGATTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATaa                                                                                                        <  2:98085/138‑1 (MQ=255)                                   cGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTGCCAAACCAACGGTTATGGAAATGAAGAAGTAAc                                                                                                       >  1:362428/1‑143 (MQ=255)                                   cGGGTACTCTGCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacag                                                                                                       >  1:631941‑M2/1‑103 (MQ=255)                                    gggTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAAACAACGATTATGAAAATGAAGAAAAAACa                                                                                                      >  2:879538/1‑143 (MQ=255)                                     ggTATTCTTCAGCAGAGAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATatggg                                                                                                     <  2:259637/143‑5 (MQ=255)                                     ggTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACaa                                                                                                     <  2:945948/143‑1 (MQ=255)                                     ggTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGAAAATAAAAATGAAGAAATAACaa                                                                                                     >  2:743100/1‑143 (MQ=255)                                         ttcttcAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGGTTCTGAAAGTGAAGAAATAACACGCaa                                                                                                 >  1:609789/1‑143 (MQ=255)                                             tcAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGCTAAAACAATTCATGATGTCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATgg                                                                                             <  1:1141530/143‑1 (MQ=255)                                               agcagAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGAca                                                                                           >  1:621911/1‑143 (MQ=255)                                                    gaaaaGCGGCAGCATTGCAGCTAAGCCAGGCTGTTGGAGGAGTGGCTGAAGGCCACGGAACCGGGACAACAACAGGTAATGCAGAGCCTCCTCCCAAACCAACGTTTATGAAAAGGAAGAAATAACAAGCAAATGGcatcatg                                                                                      <  1:583802/142‑2 (MQ=255)                                                    agaaaGCGGGATCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCAACGGAACCGGGACACCAGCAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGGAGAAATAACAAGCAAATGGCATCAtt                                                                                      <  2:402681/141‑1 (MQ=255)                                                    aaaaaGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgata                                                                                      <  1:464566‑M2/143‑58 (MQ=255)                                                      aaaGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCCACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgattgcacggtgccagccgatctgatatc                                                                                    <  2:178742‑M2/143‑60 (MQ=255)                                                      aaaGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggctttcgagagccggttgcacagtgccatccgaattgatatc                                                                                    <  2:667270‑M2/143‑60 (MQ=255)                                                           ggCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCACCAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGCAAATGCAGCAACAAAAACCAAATAGCATGACTCCtacct                                                                               >  2:104269/1‑139 (MQ=255)                                                            gCACCATTGCATCTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccaaa                                                                              >  1:99802‑M2/1‑78 (MQ=255)                                                                cATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTACTGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgctttgatatcgccaaacggc                                                                          <  2:243529‑M2/143‑70 (MQ=255)                                                                  ttGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcaccgtgccatccgatttgatctcgccacacggctt                                                                        <  2:542300‑M2/143‑72 (MQ=255)                                                                    gCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtcccatccgatttgatatcgccaaacggatccc                                                                      <  2:370903‑M2/143‑74 (MQ=255)                                                                      aTTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccaaacggattcttg                                                                    >  2:678176‑M2/1‑68 (MQ=255)                                                                       gtgcagccagtctgTTGGCGGAGCGGCTGCAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccaaacggattcttgc                                                                   >  2:989958‑M2/4‑67 (MQ=255)                                                                        ttCTGCGAGCCCGGTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGAt                                                                  <  1:1122285/143‑1 (MQ=255)                                                                          cagccagcCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCACCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGAttt                                                                <  2:670090/143‑1 (MQ=255)                                                                            gccagccTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAACGCAGAGccttctcccaaacccaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccaaacggattcttgcggctt                                                              >  1:104835‑M2/1‑62 (MQ=255)                                                                                gccTGTTGGCGGAGTTGCTGAAGGCCACGGAACCTGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccaaacggattcttgcggcttaaca                                                          >  1:464904‑M2/1‑58 (MQ=255)                                                                                   tgtgGGCGGAGTGGCTGAAGGCCCCGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaacccatgtttgcgagagccgtttgcacagggccatccgatttgatatcgccaaacggattcttgcggcttaacagca                                                       >  1:101737‑M2/1‑55 (MQ=255)                                                                                      tGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcccagtgccatccgatttgatatcgccaaacggattcttgcggcttaacagcagcg                                                    <  1:1028342‑M2/143‑92 (MQ=255)                                                                                               ggCTGAACGCCACTGAACCGGCACACCAACAGGTAATGCAGAGccttctcccaacccgaggtgttcgagagccgtttgcacagtgccatccgagttgatatcgccaaacggattcttgcggcttaacagcagcgcgcgaagtg                                           >  2:718946‑M2/1‑43 (MQ=255)                                                                                                  tGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccaaacggattcttgcggcttaacagcagcgcgcgaagtgcgg                                        <  1:24805‑M2/143‑104 (MQ=255)                                                                                                  tGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTAcgc                                        >  1:315035/1‑143 (MQ=255)                                                                                                  cgAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTAcgc                                        <  1:248392/142‑1 (MQ=255)                                                                                                   gAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccaaacggattcttgcggcttaacagcagcgcgcgaagtgcggt                                       >  1:818998‑M2/1‑39 (MQ=255)                                                                                                     aGGCCACGGAACCGGGACACCAACAGGGAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTa                                     <  1:982983/143‑1 (MQ=255)                                                                                                         cACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCACACCCACGTTTATGAACATCACGAACTCACAAGCAAATGGCATCCTTCCTGCTTTTACCAGGGGGAATTAACATGCTTATTGGCTCTGTACGCGTATcaa                                 >  1:186268/1‑143 (MQ=255)                                                                                                          aCGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttgtcgagagccgtttgcacagtgccatccgatttgatatcacacaacggattcttgcggccacacagcagcgcgcggactccggaaaggaac                                <  2:93320‑M2/143‑112 (MQ=255)                                                                                                             gAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACaaa                             <  2:52515/143‑1 (MQ=255)                                                                                                                 cGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATCGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTAGCTATGTACGCGTAACAACAAATgca                         >  2:881730/1‑141 (MQ=255)                                                                                                                   ggACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTACTGCTTTTACCAGGGGGATTTAACATGCTTATGGGCTATGTACGCGTATCAACAAATGACCa                       >  1:581014/1‑143 (MQ=255)                                                                                                                      cacCAACCGGTAATGCAGAGCCTTCTCCCAAACCAACGTCTATGAAAATGAAGAAATACCAAGCAAATGGCATCATTACTGCTTTAACAAGGGGGAAGACACATGCACATTGGCAATGTAGGGGAAGCTATAAATGAACAGaa                    >  2:543839/1‑143 (MQ=255)                                                                                                                        ccAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccaaacggattcttgcggcttaacagcagcgcgcgcagtgcggtaagtaactgctcgtgccgccc                  <  1:654149‑M2/143‑126 (MQ=255)                                                                                                                         cAACAGGTAATGCAGCGCCTTCTCCCAAACCAACGTTTATGAAAATGGAGCAATACCAAGCACATGGCATCAGTCCTGCTTTTACCATGGGGACGTAACATGCCTAGTGGCGATGTACCGGGCTCAACCAATGAGCCGCacac                 >  2:893712/1‑143 (MQ=255)                                                                                                                         cAACAGGTAATGCAGAGccttctcccaacccacggttattgtgatctgtttggacagtgccatccgatttgatatcgccaaacggattcttgcggcttaacagcagcgcgcgaagtgcggtaagtaactggtcgtgccgcccc                 <  1:789354‑M2/143‑127 (MQ=255)                                                                                                                         cAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccaaacggattcttgcgccttaaccgcagcgcgcgacgtgcggtaagtaactggacgtgacgcccc                 <  2:32011‑M2/143‑127 (MQ=255)                                                                                                                               gTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATAACCAAGACACAGATCt           >  2:1023725/1‑143 (MQ=255)                                                                                                                                tAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccaaacggattcttgcggcttaacagcagcgcgcgaagtgcggtaagtaactggtcgtgccgccccttatcca          <  2:298720‑M2/143‑134 (MQ=255)                                                                                                                                    gCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccaaacggattcttgcggcttaaccgccgcgcgcccaccgcggtaagtaacctgtcgtgccgccccttctccaagat      <  1:316953‑M2/143‑138 (MQ=255)                                                                                                                                    gCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccaaacggattcttgcggcttaacagcagcgcgcgaagtgcggtaagtaactggtcgtgccgccccttctccaggct      <  1:21472‑M2/143‑138 (MQ=255)                                                                                                                                    gCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAAc      >  2:618669/1‑143 (MQ=255)                                                                                                                                        agccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccacacggattcttgcggcttaacagcagcgcgcgaagtgcggtaagtaactggtcgtcccgccccttctccaggctgaca  <  2:428180‑M2/143‑142 (MQ=255)                                                                                                                                         |                                                                                                                                              GCAATTTATTTGTCGGATAAGCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAACGTAA  >  NC_000913/1209466‑1209743

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.