New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 315892 =NA (NA)4 (0.080) 4/256 NT NA noncoding (664/1255 nt) IS3 repeat region
?NC_000913 315923 = NA (NA)noncoding (695/1255 nt) IS3 repeat region

Only 100 of 119 total aligned reads displayed.

CACTGCCAGATACAGCCAGCCTTCATCTGTACGTAAGTACGTGATGTCTCCTGCCCACTTCTGGTTCGGGCCACTGGCGTAAAAATCCTGCTCCAACAGATTTTCTGACACAGGCAGGCCGTGTGCGCGGTAGCTGACCGGGCTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/316036‑315892
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑c‑tgCCTGTGTCAGAAAATCTGTTGGAGCAGGATTTTTACGCCAGTGGCCCGAACCAGAAGTGGGCAGGAGACATCACGTACTTACGTACAGATGAAGGCTGGCTGTATCTGGCAGTGGTCATTGACCTGTGGTCACGTGCCGTTA  >  NC_000913/315923‑316064
                                                                                                                                                                                                                                                                                                 
cgCTGCCGGATACCGCCAGCCTTCATCTGGACGTAAGGACGTGATGTCTCCTGCCCACTTCTGGTTCGGGCCACTGGCGTAAAAATCCTGCTCCAACAGATTTTCTGACACAGGCAGGCCGTGTGCGCGGTAGCTGACCGGGC                                                                                                                                                    <  2:764794/141‑1
CACTGCCAGATCCCGCCAGCCTTCTTCTGGACGGAAGTACGTGATGTCTCCTGCCCACTTCTGGTTCGGGCCACTGGCGTAAAAATCCTGCTCCAACAGATTTTCTGACACAGGCAGGCCGTGTGCGCGGTAGCTGACCGGGC                                                                                                                                                    <  2:1014533/143‑1
CACTGCCAGATACATCCAGCCTTCATCTGTACGTAAGTACGTGAGGTCTCCTGCCCACTTCTGGTGCGGGCCACTGGCGTAAAAATCCTGCTCCAACAGATTTTCTGACACAGGCAGGCCGTGTGCGCGGTAGCTGACCGGGC                                                                                                                                                    <  2:309862/143‑1
CACTGCCAGATACAGCCAGCCTTCATCTGTACGTCAGTACGTGACGTCTCCTGCCCACTTCTGGTTCGGGCCACTGGCGTAAAAATCCTGCTCCAACGGATTTTCCGACACAGGCAGGCCGTGTGCGCGGTAGCGGACCGGGC                                                                                                                                                    >  2:303755/1‑143
CACTGCCAGATACAGCCAGCCTTCATCTGTACGTAAGTACTGGATGTCTCCTGCCCACTTCTGGTTCGGGCCACTGGCGTAAAAATCCTGCTCCCACAGATTTTCTGACACAGGCAGGCCGTGTGCGCGGTAGCTGACCGGGC                                                                                                                                                    <  2:449853/143‑1
CACTGCCAGATACAGCCAGCCTTCATCTGTACGTAAGTACGTGATGTCTCCTGCCCACTTCTGGTTCGTGGCACTGGCGTAAAAAGACTTCGCCAACAGATTGGTGGACACAGGCAGGCCGTGTGCGCGGTAGCTGACCGGGC                                                                                                                                                    <  1:223367/143‑1
CACTGCCAGATACAGCCAGCCTTCATCTGTACGTAAGTACGTGATGTCTCCTGCCCACTTCTGGTTCGGGCCACTGGCGTAAAAATCCTGCTCCCACAGATTTTCTGACACAGGCAGGCCGTGTGCGCGGTAGCTTACCGGGC                                                                                                                                                    >  2:814534/1‑143
CACTGCCAGATACAGCCAGCCTTCATCTGTACGTAAGTACGTGATGTCTCCTGCCCACTTCTGGTTCGGGCCACTGGCGTAAAAATCCTGCTCCAACAGATTTTCTGACACCGGCAGGCCGTGTGCGCGGTCGCTGACCGGGC                                                                                                                                                    >  1:52426/1‑143
CACTGCCAGATACAGCCAGCCTTCATCTGTACGTAAGTACGTGATGTCTCCTGCCCACTTCTGGTTCGGGCCACTGGCGTAAAAATCCTGCTCCAACAGATTTTCTGACACAGGCAGGCCGTGTGCGCGGTAGCTGACCGGGC                                                                                                                                                    >  2:365302/1‑143
CACTGCCAGATACAGCCAGCCTTCATCTGTACGTAAGTACGTGATGTCTCCTGCCCACTTCTGGTTCGGGCCACTGGCGTAAAAATCCTGCTCCAACAGATTTTCTGACACAGGCAGGCCGTGTGCGCGGTAGCTGACCGGGC                                                                                                                                                    >  2:453418/1‑143
CACTGCCAGATACAGCCAGCCTTCATCTGTACGTAAGTACGTGATGTCTCCTGCCCACTTCTGGTTCGGGCCACTGGCGTAAAAATCCTGCTCCAACAGATTTTCTGACACAGGCAGGCCGTGTGCGCGGTAGCTGACCGGGC                                                                                                                                                    <  2:184573/143‑1
CACTGCCAGATACAGCCAGCCTTCATCTGTACGTAAGTACGTGATGTCTCCTGCCCACTTCTGGTTCGGGCCACTGGCGTAAAAATCCTGCTCCAACAGATTTTCTGACACAGGCAGGCCGTGTGCGCGGTAGCTGACCGGGC                                                                                                                                                    >  2:635730/1‑143
CACTGCCAGATACAGCCAGCCTTCATCTGTACGTAAGTACGTGATGTCTCCTGCCCACTTCTGGTTCGGGCCACTGGCGTAAAAATCCTGCTCCAACAGATTTTCTGACACAGGCAGGCCGTGTGCGCGGTAGCTGACCGGGC                                                                                                                                                    >  2:934998/1‑143
CACTGCCAGATACAGCCAGCCTTCATCTGTACGTAAGTACGTGATGTCTCCTGCCCACTTCTGGTTCGGGCCACTGGCGTAAAAATCCTGCTCCAACAGATTTTCTGACACAGGCAGGCCGTGTGCGCGGTAGCTGACCGGGC                                                                                                                                                    <  1:96845/143‑1
CACTGCCAGATACAGCCAGCCTTCATCTGTACGTAAGTACGTGATGTCTCCTGCCCACTTCTGGTTCGGGCCACTGGCGTAAAAATCCTGCTCCAACAGATTTTCTGACACAGGCAGGCCGTGTGCGCGGTAGCTGACCGGGC                                                                                                                                                    <  1:814145/143‑1
CACTGCCAGATACAGCCAGCCTTCATCTGTACGTAAGTACGTGATGTCTCCTGCCCACTTCTGGTTCGGGCCACTGGCGTAAAAATCCTGCTCCAACAGATTTTCTGACACAGGCAGGCCGTGTGCGCGGTAGCTGACCGGGC                                                                                                                                                    <  1:730101/143‑1
CACTGCCAGATACAGCCAGCCTTCATCTGTACGTAAGTACGTGATGTCTCCTGCCCACTTCTGGTTCGGGCCACTGGCGTAAAAATCCTGCTCCAACAGATTTTCTGACACAGGCAGGCCGTGTGCGCGGTAGCTGACCGGGC                                                                                                                                                    >  2:1026475/1‑143
CACTGCCAGATACAGCCAGCCTTCATCTGTACGTAAGTACGTGATGTCTCCTGCCCACTTCTGGTTCGGGCCACTGGCGTAAAAATCCTGCTCCAACAGATTTTCTGACACAGGCAGGCCGTGTGCGCGGTAGCTGACCGGGC                                                                                                                                                    <  1:208571/143‑1
CACTGCCAGATACAGCCAGCCTTCATCTGTACGTAAGTACGTGATGTCTCCTGCCCACTTCTGGTTCGGGCCACTGGCGTAAAAATCCTGCTCCAACAGATTTTCTGACACAGGCAGGCCGTGTGCGCGGTAGCTGACCGGGC                                                                                                                                                    >  1:1041690/1‑143
CACTGCCAGATACAGCCAGCCTTCATCTGTACGTAAGTACGTGATGTCTCCTGCCCACTTCTGGTTCGGGCCACTGGCGTAAAAATCCTGCTCCAACAGATTTTCTGACACAGGCAGGCCGTGTGCGCGGTAGCTGACCGGGC                                                                                                                                                    >  1:130617/1‑143
CACTGCCAGATACAGCCAGCCTTCATCTGTACGTAAGTACGTGATGTCTCCTGCCCACTTCTGGTTCGGGCCACTGGCGTAAAAATCCTGCTCCAACAGATTTTCTGACACAGGCAGGCCGTGTGCGCGGTAGCTGACAGGGC                                                                                                                                                    >  1:536442/1‑143
CACTGCCAGATACAGCCAGCCTTCATCTGTACGTAAGTACGTGATGTCTCCTGCCCACTTCTGGTTCGGGCCACTGGCGTAAAAATCCTGCTCCAACAGATTTTCCGACACAGGCAGGCCGCGTGCGCGGGCGCTGCCCGGGC                                                                                                                                                    >  2:767307/1‑143
CACTGCCAGATACAGCCAGCCTTCATCTGTACGTAAGTACGTGATGTCTCCTGCCCACTTCTGGTTCGGGACACTGGCTTAAAAATCCTGCTCCAACAGATTTTCTGACACAGGCAGGCCGTGTGCGCGGTAGCTGACCGGGC                                                                                                                                                    >  2:70350/1‑143
CACTGCCAGATACAGCCAGCCTTCATCTGTACGTAAGTACGTGATGTCTCCTGCCCACATCTGATTAGGGCCACTGGCGTAAAAATCCTGCTCCAACAGATTATCTGACACAGGCAGGCCGTAGACGCGATAGCTTATCGGGC                                                                                                                                                    >  2:58133/1‑143
CACTGCCAGATACAGCCAGCCTTCATCTGTACGTAAGTACGTGATGACTCCTGCCCCCTTCTGGTTCGGGCCACTGGCGTAACAATCCTGCCCACACAGATCGTCTGACACAGGCAGGCCGTGTGCGCGGTAGCTGACCGGGC                                                                                                                                                    >  2:418103/1‑143
CACTGCCAGAGACAGCCAGCCTTCATCTGTACGTAAGTACGTGATGCCTCCTCCCCACTTCTGGTTCGGGCCACTGGCGTAAAAATCCTGCTCCAACAGATTTTCTGACACAGGCAGGCCGTGTGCGCGGTAGCTGACCGGGC                                                                                                                                                    <  1:92831/143‑1
CACTGCCAGAGACAGCCAGCCGTCATCGGGACGTAAGTACGTGGGGTCTCCTGCCCACTTCTGGTTCGGGCCACTGGCGTAGAAATCCTGCTCCAACAGATTTTCTGACACAGGCAGGCCGTGTGCGCGGTAGCTGACCGGGC                                                                                                                                                    <  1:86173/143‑1
 gCTGCCTGTTACTGCCAGCCTTCCTCTGCACGTAAGTACGTGAGGCCCCCTGCCCCCTTCTGGTTCGGGCCGCTGGCGTAAAAATCCTGCTCCAACAGATTTTCTGACACAGGCAGGCCGTGTGCGCGGTAGCTGACCGGGCT                                                                                                                                                  <  2:286978/142‑1
 cactcgAGATCCAGCCAGCCTTCGTCTGTACGTAAGTACGTGATGTCTCCTGCCCACTTCTTGTTCGGGCCACTGGCGTAAAAAGCCTGCTCCAACAGATTTTCTGACACAGGCAGGCCGTGTGCGCGGTAGCTGACCGGGCT                                                                                                                                                  <  2:405206/137‑1
 cCTGCCAGATACAGCCAGCCTTCATCTGTACGTAAGTACGTGATGTCTCCTGCCCACTTCTGGTTCGGGCCACTGGCGTAAAAATCCTGCTCCAACAGATTTTCTGACACAGGCAGGCCGTGTGCGCGGTAGCTGACCGGGCT                                                                                                                                                  <  1:406879/142‑1
 acgcCCAGATGCAGCCAGCCTTCATCTGTACGTAAGTACGTGATGTCTCCTGCCCACTTCTGGTTTGGTCGCCGCGCGTAAAAATCCTGCTCCAACAGATTTTCTGACACAGGCAGGCCGTGTGCGCGGTAGCTGACCGGGCT                                                                                                                                                  <  2:126145/139‑1
 ACTGCCCGATACAGCCTGCCTTCATCTGTACGTATGTACGTGATGTCTCCTGCCCACTTCTGGTTCGGGCCACTGGCGTAAAAATCCTGCTCCAACAGATTTTCTGACACAGGCAGGCCGTGTGCGCGGTAGCTGACCGGGCT                                                                                                                                                  <  2:251607/143‑1
 ACTGCCAGATACAGCCAGCTTTCATCTGTACGTATGTACGTGTTGTCTCCTGCCCACTTCTGGTTCGGGCCACTGGCGTAAAAATCCTGCTCCAACAGATTTTCTGACACAGGCAGGCCGTGTGCGCGGTAGCTGACCGGGCT                                                                                                                                                  <  2:312378/143‑1
 ACTGCCAGATACAGCCAGCCTTCATCTGTACGTAAGTACGTGATGTCTCCTGCCCCCTTCTGGTTCGGGCCACTGGCGTAAAAATCCTGCTCCAACAGATTTTCTGACACAGGCAGGCCGTGTGCGCGGTAGCTGACCGGGCT                                                                                                                                                  >  1:600033/1‑143
 ACTGCCAGATACAGCCAGCCTTCATCTGTACGTAAGTACGTGATGTCTCCTGCCCACTTCTTGTTCGGGCCACGGGCGTAAAAATCCTCCTCCAACAGATTTTCTGACACAGGCAGGCCGTGTGCGCGGTAGCTGACCGGGCT                                                                                                                                                  >  2:674371/1‑143
 ACTGCCAGATACAGCCAGCCTTCATCTGTACGTAAGTACGTGATGTCTCCTGCCCACTTCTGGTTCGGGCCACTGGCGTAAAAATCCTGCTCCAACAGATTTTCTGACACAGGCAGGCCGTGTGCGCGGTAGCTGACCGGGCT                                                                                                                                                  >  2:327017/1‑143
 ACTGCCAGATACAGCCAGCCTTCATCTGTACGTAAGTACGTGATGTCTCCTGCCCACTTCTGGTTCGGGCCACTGGCGTAAAAATCCTGCTCCAACAGATTTTCTGACACAGGCAGGCCGTGTGCGCGGTAGCTGACCGGGCT                                                                                                                                                  >  2:198695/1‑143
 ACTGCCAGATACAGCCAGCCTTCATCTGTACGTAAGTACGTGATGTCTCCTGCCCACTTCTGGTTCGGGCCACTGGCGTAAAAATCCTGCTCCAACAGATTTTCTGACACAGGCAGGCCGTGTGCGCGGTAGCTGACCGGGCT                                                                                                                                                  <  2:883330/143‑1
 ACTGCCAGATACAGCCAGCCTTCATCTGTACGTAAGTACGTGATGTCTCCTGCCCACTTCTGGTTCGGGCCACTGGCGTAAAAATCCTGCTCCAACAGATTTTCTGACACAGGCAGGCCGTGTGCGCGGTAGCTGACCGGGCT                                                                                                                                                  <  2:840727/143‑1
 ACTGCCAGATACAGCCAGCCTTCATCTGTACGTAAGTACGTGATGTCTCCTGCCCACTTCTGGTTCGGGCCACTGGCGTAAAAATCCTGCTCCAACAGATTTTCTGACACAGGCAGGCCGTGTGCGCGGTAGCTGACCGGGCT                                                                                                                                                  >  1:556691/1‑143
 ACTGCCAGATACAGCCAGCCTTCATCTGTACGTAAGTACGTGATGTCTCCTGCCCACTTCTGGTTCGGGCCACTGGCGTAAAAATCCTGCTCCAACAGATTTTCTGACACAGGCAGGCCGTGTGCGCGGTAGCTGACCGGGCT                                                                                                                                                  >  1:854831/1‑143
 ACTGCCAGATACAGCCAGCCTTCATCTGTACGTAAGTACGTGATGTCTCCTGCCCACTTCTGGTTCGGGCCACTGGCGTAAAAATCCTGCTCCAACAGATTTTCTGACACAGGCAGGCCGTGTGCGCGGTAGCTGACCGGGCT                                                                                                                                                  >  1:381190/1‑143
 ACTGCCAGATACAGCCAGCCTTCATCTGTACGTAAGTACGTGATGTCTCCTGCCCACTTCTGGTTCGGGCCACTGGCGTAAAAATCCTGCTCCAACAGATTTTCTGACACAGGCAGGCCGTGTGCGCGGTAGCTGACCGGGCT                                                                                                                                                  <  1:174726/143‑1
 ACTGCCAGATACAGCCAGCCTTCATCTGTACGAAAGTACGTGATGTCTCCTGCCCACTTCTGGTTCGGGCCACTGGCGTAAAAATCCTGCCCCAACAGATCTTCTGACACAGGCAGGCCGTGTGCGCGGTAGCTGACCGCGCT                                                                                                                                                  >  2:553612/1‑143
  cgGCCAGATACAGCCAGCCTTCATCTGTACGTAAGTACGTGATGTCTCCTGCCCACTTCTGGTTCGGGCCACTGGCGTAAAAATCCTGCTCCAACAGATTTTCTGACACAGGCAGGCCGTGTGCGCGGTAGCTGACCGGGCTG                                                                                                                                                 <  1:727728/141‑1
  CTGCCAGATACAGCCAGCCTTCATCTGTACGTAAGTACGTGATGTCTCCTGCCCACTTCTTGTTCGGGCCACTGGCGTAAAAATCCTGCTCCAACAGATTTTCTGACACAGGCAGGCCGTGTGCGCGGTAGCTGACCGGGCTG                                                                                                                                                 <  1:921988/143‑1
  CTGCCAGATACAGCCAGCCTTCATCTGTACGTAAGTACGTGATGTCTCCTGCCCACTTCTGGTTCGGGCCACTGGCGTAGAAATCCTGCTCCAACAGATTTTCTGACACAGGCAGGCCGTGTGCGCGGTAGCTGACCGGGCTG                                                                                                                                                 <  2:684773/143‑1
  CTGCCAGATACAGCCAGCCTTCATCTGTACGTAAGTACGTGATGTCTCCTGCCCACTTCTGGTTCGGGCCACTGGCGTAAAAATCCTGCTCCAACAGATTTTCTGACACAGGCAGGCCGTGTGCGCGGTAGCTGACCGGGCTG                                                                                                                                                 >  1:674728/1‑143
  CTGCCAGATACAGCCAGCCTTCATCTGTACGTAAGTACGTGATGTCTCCTGCCCACTTCTGGTTCGGGCCACTGGCGTAAAAATCCTGCTCCAACAGATTTTCTGACACAGGCAGGCCGTGTGCGCGGTAGCTGACCGGGCTG                                                                                                                                                 <  1:763887/143‑1
  CTGCCAGATACAGCCAGCCTTCATCTGTACGTAAGTACGTGATGTCTCCTGCCCACTTCTGGTTCGGGCCACTGGCGTAAAAATCCTGCTCCAACAGATTTTCTGACACAGGCAGGCCGTGTGCGCGGTAGCTGACCGGGCTG                                                                                                                                                 <  2:648424/143‑1
  CTGCCAGATACAGCCAGCCTTCATCTGTACGTAAGTACGTGATGTCTCCTGCCCACTTCTGGTTCGGGCCACTGGCGTAAAAATCCTGCTCCAACAGATTTTCTGACACAGGCAGGCCGTGTGCACGGTAGCTGACCGGGCTG                                                                                                                                                 >  2:594348/1‑143
  CTGCCAGATACAGCCAGCCTTCATCTGTACGTAAGTACGTGATGTCTCCTGCCCACTTCTGGTTCGAGCCACTGGCGTAAAAATCCTGCTCCAACAGATTTTCTGACACACGCAAGCCGTGTGCGCGGTCGCGGACCGGGCTG                                                                                                                                                 >  2:345605/1‑143
   TGCCGGATACAGCCAGCCTTCATCTGTACGTAAGTACGTGATGTCTCCTGCCCACTTCTGGTTCGGGCCACTGGCGTAAAAATCCTGCTCCAACAGATTTTCTGACACAGGCAGGCCGAGTGCGCTGTAGCTGACCGGGCTGC                                                                                                                                                >  2:166885/1‑143
   TGCCAGATACAGCCAGCCTTCATCTGTACGTAAGTACGTGCTGTCTCCTGCCCCCCTCTGGTTCGGGCCCCTGGCGTAAAAATCCTGCTCCAACAGCTTTTCTGACACAGGCAGGCCGTGTGCGCGGTAGCTGACGGGGCTGC                                                                                                                                                >  1:187277/1‑143
   TGCCAGATACAGCCAGCCTTCATCTGTACGTAAGTACGTGATGTCTCCTGCCCACTTCTGGTTCGGGCCACTGGCGTAAAAATCCTGCTTCAACAGATTTTCTGACACAGGTAAGCTGTGTGCGCGGTAGCTGACCGGGCTGC                                                                                                                                                >  1:191863/1‑143
   TGCCAGATACAGCCAGCCTTCATCTGTACGTAAGTACGTGATGTCTCCTGCCCACTTCTGGTTCGGGCCACTGGCGTAAAAATCCTGCTCCAACAGATTTTCTGACACAGGCAGGCCGTGTGCGCGGTAGCTGCCCGGGCTGC                                                                                                                                                >  1:495299/1‑143
     CCAGATACAGCCAGCCTTCATCTGTACGTAAGTACGTGATGTCTCCTGCCCCCTTCTGGTTCGGGCCAGTGGCGTAAAAATCCTGCTCCAACACATTTTCTGACACAGGCAGGACGTGTGCGCGGTAGCCGACCGGCCTcaac                                                                                                                                              >  2:572784/1‑139
     CCAGATACAGCCAGCCTTCATCTGTACGTAAGTACGTGATGTCTCCTGCCCACTTCTGGTTCGGGCCACTGGCGTACAAATCCTGCTCCAACAGATTTTCTGACACAGGCAGGCCGTGTGCGCGGTAGCTGACCGGGCTGgac                                                                                                                                              >  2:466215/1‑140
           ACAGCCAGCCTTCATCTGTACGTAAGTACGTGATGTCTCCTGCCCACTTCTGGTTCGGGCGACTGGCGTAAAAATCCTGCTCCAACAGATTTCCTGACACAGGCAGGCCGTGTGCGCGGTAGCTGACCGGGCTGCCcttccgg                                                                                                                                        >  1:735851/1‑136
                                                                                                    TTTTCTGACACAGGCAGGCCGTGTGCGCGGTAGCTGACCGGGCTGCCTGTGTCAGAAAATCTGTTGGAGCAGGAGTTTTACGGCAGTGGCCCGAACCAGAAGGGGGCAGGGGACATAACGTGCATACGTACAGGTGAAGGCTG                                              >  1:62895/1‑143
                                                                                                           ACACAGGCAGGCCGTGTGCGCGGTAGCTGACCGGGCTGCCTGTGTCAGAAAATCTGTTGGAGCAGGATTTTTACGCCAGTGGCCCGAACCAGAAGTGGGCAGGAGACATCACGTACTGACGTACAGATGAAGGCTGGCTGTAT                                       >  1:1017012/1‑143
                                                                                                                  CAGGCCGTGTGCGCGGTAGCTGACCGGGCTGCCTGTGTCAGAAAATCTGTTGGAGCAGGATTTTTACGCCAGTGGCCCGAACCAGAAGTGGGCAGGAGACATCACGTACTTACGTACAGATGAAGGCTGGCTGTATCTGGCcg                                >  1:464265/1‑141
                                                                                                                                   gcgcagaCGGGCTGCCTGTGTCAGAAAATCTGTTGGAGCAGGATTGTTACGCCAGTGGCCCGAACCAGAAGTGGGCAGGAGACATCACGTACTGACGTACAGATGAAGGCTGGCTGTATCTGGCAGTGGTCATTGACCTGTGG               <  1:407209/136‑1
                                                                                                                                      gctCCGGGCGTGCCTGTGTCAGATGGGCTGTGGGAGCAGGATTTTTACGCCAGTGGCCCGAACCAGAAGTGGGCAGGAGACATCACGTACTTACGTACAGATGAAGGCTGGCTGTATCTGGCAGTGGTCATTGACCTGTGGTC             <  2:1049234/140‑1
                                                                                                                                       acaCGGGCTGCCTGTGTCAGAGAAGCTGTTGGCGCAGGATTTTTACGGCAGTGGCCCGAACCAGAAGTGGGCAGGAGACATCACGTACTTACGTACAGATGAAGGCTGGCTGTATCTGGCAGTGGTCATTGACCTGTGGTCAC           <  2:781652/140‑1
                                                                                                                                       acaCGGGCTGCCTGGGTCAGTAAATGTGGTGGAGCAGGATTTTTACGCCAGTGGCCCGAACCAGAAGTGGGCAGGTGACATCACGTACTTACGTACAGATGAAGGCTGGCTGTATCTGGCAGTGGTCATTGACCGGTGGTCAC           <  2:667896/140‑1
                                                                                                                                           cggctgGCCTGTGTCAGAAAATCTGTTGGAGCAGGATTTTTACGCCAGTGGCCCGAACCAGAAGTGGGCAGGAGACATCACGTACTTACGTACAGATGAAGGCTGGCTGTATCTGGCAGTGGTCATTGACCTGTGGTCACGTG        <  2:1022817/137‑1
                                                                                                                                            gtCTGCCTGTGTCAGAATAGCTGTTGGAGCAGGATTTTTACGCCAGTGGCCCGAACCAGAAGTGGGCAGGGGACATCACGTACTTACGTACAGATGAAGGCTGGCTGTATCTGGCAGTGGTCATTGACCTGTGGTCACGTGCC      <  2:830539/141‑1
                                                                                                                                            GGCTGCCTGGGTCAGAATATCTGGTGGAGCAGGATCTTTACGCCAGTGGCCCCAATCAGAAGTGGGCAGGAGGCATCACGTACTTACGTACAGATGAAGGCTGGCTGTATCTGGCAGTGGTCATTGACCTGTGGTCACGTGCC      <  2:634115/143‑1
                                                                                                                                             gcggGCCTGGGCCAGAAAGTCTGTGGGAGGGGGATTTCTACGCCAGTGGCCCGAACCAGAAGTGGGCAGGAGACATCACGTACTTACGTACAGATGAAGGCTGGCTGTATCTGGCAGTGGTCATTGACCTGTGGTCACGTGCC      <  2:417389/139‑1
                                                                                                                                             gcgTGCCTGTGTCAGAAAAGCGGTTGGAGCAGGATGTTTACGCCAGTGGCCCGAACCAGAAGTGGGCAGGAGACATCACGTACTTACGTACAGATGAAGGCTGGCTGTATCTGGCAGTGGTCATTGACCTGTGGTCACGTGCC      <  2:392484/140‑1
                                                                                                                                             GCTGCCTGTGGCAGAAAATCGGTTGGGGGAGGATGTTTACGCCAGTGGCCCGAACCAGAAGTGGGCAGGAGACATCACGTACTTACGTACAGATGAAGGCTGGCTGTATCTGGCAGTGGTCATTGACCTGTGGTCACGTGCCG     <  2:645073/143‑1
                                                                                                                                              tcgGCCTGTGGCAGAAAATCTGGGGGAGCTGGATTTTTACGCCAGTGGCCCGAACCAGAAGTGGGCAGGAGACATCACGTACTTACGTACAGATGAAGGCTGGCTGTATCTGGCAGTGGTCATTGACCTGTGGTCACGTGCCG     <  2:759200/140‑1
                                                                                                                                              CTGCCTGTGTCAGAACATCTGTTGGAGCAGGATTTTTACGCCAGTGGCCCGAACCAGAAGTGGGCAGGAGACATCACGTACTTACGTACAGATGAAGGCTGGCTGTATCTGGCAGTGGTCATTGACCTGTGGTCACGTGCCGT    <  1:459717/143‑1
                                                                                                                                              CTGCCTGTGTCAGAAAATCTGTTGGAGCAGGATTTTTACGCCAGTGGCCCGAACCAGAAGTGGGCAGGAGCCCTCACGTACTTACGTACAGATGAAGGCTGGCTGTATCTGGCAGTGGTCATTGACCTGTGGTCACGTGCCGT    >  1:416358/1‑143
                                                                                                                                              CTGCCTGTGTCAGAAAATCTGTTGGAGCAGGATTTTTACGCCAGTGGCCCGAACCAGAAGTGGGCAGGAGACATCACGTACTTACGTACAGGTGAAGGCTGGCTGTATCTGGCAGTGGTCATTGCCCTGTGGTCACGTGCCGT    >  2:686969/1‑143
                                                                                                                                              CTGCCTGTGTCAGAAAATCTGTTGGAGCAGGATTTTTACGCCAGTGGCCCGAACCAGAAGTGGGCAGGAGACATCACGTACTTACGTACAGATGACGGCTGGCTGTATCTGGCCGCGGTCATTGACATGGGGTAACGAGCCGT    >  1:283239/1‑143
                                                                                                                                              CTGCCTGTGTCAGAAAATCTGTTGGAGCAGGATTTTTACGCCAGTGGCCCGAACCAGAAGTGGGCAGGAGACATCACGTACTTACGTACAGATGAAGGCTGGCTGTATCTGGCAGTGGTCATTGACCTGTGGTCACGTGCCGT    <  1:600107/143‑1
                                                                                                                                              CTGCCTGTGTCAGAAAATCTGTTGGAGCAGGATTTTTACGCCAGTGGCCCGAACCAGAAGTGGGCAGGAGACATCACGTACTTACGTACAGATGAAGGCTGGCTGTATCTGGCAGTGGTCATTGACCTGTGGTCACGTGCCGT    >  1:53294/1‑143
                                                                                                                                              CTGCCTGTGTCAGAAAATCTGTTGGAGCAGGATTTTTACGCCAGTGGCCCGAACCAGAAGTGGGCAGGAGACATCACGTACTTACGTACAGATGAAGGCTGGCTGTATCTGGCAGTGGTCATTGACCTGTGGTCACGTGCCGT    >  2:203482/1‑143
                                                                                                                                              CTGCCTGTGTCAGAAAATCTGTTGGAGCAGGATTTTTACGCCAGTGGCCCGAACCAGAAGTGGGCAGGAGACATCACGTACTTACGTACAGATGAAGGCTGGCTGTATCTGGCAGTGGTCATTGACCTGTGGTCACGTGCCGT    <  1:834602/143‑1
                                                                                                                                              CTGCCTGTGTCAGAAAATCTGTTGGAGCAGGATTTTTACGCCAGTGGCCCGAACCAGAAGTGGGCAGGAGACATCACGTACTTACGTACAGATGAAGGCTGGCTGTATCTGGCAGTGGTCATTGACCTGTGGTCACGTGCCGT    >  1:899009/1‑143
                                                                                                                                              CTGCCTGTGTCAGAAAATCTGTTGGAGCAGGATTTTTACGCCAGTGGCCCGAACCAGAAGTGGGCAGGAGACATCACGTACTTACGTACAGATGAAGGCTGGCTGTATCTGGCAGTGGTCATTGACCTGTGGTCACGTGCCGT    >  1:214174/1‑143
                                                                                                                                              CTGCCTGTGTCAGAAAATCTGTTGGAGCAGGATTTTTACGCCAGTGGCCCGAACCAGAAGTGGGCAGGAGACATCACGTACTTACGTAACGACGATGGCTGGCTGTATCTGGCACAGGTCATTGCCCTGTGGTCACGTGCCGT    >  2:688065/1‑143
                                                                                                                                              CTGCCTGTGTCAGAAAAGCTCTTGGAGCAGGATTTTTACGCCAGTGGCCCGAACCAGAAGTGGGCAGGAGACATCACGTACTTACGTACAGATGAAGGCTGGCTGTATCTGGCAGTGGTCATTGACCTGTGGTCACGTGCCGT    <  1:148234/143‑1
                                                                                                                                              CTGCCTGGGTCAGAAAATCTGTTGGAGCAGGATTTTTACGCCAGTGGCCCGAACCAGAAGGGGGCAGGAGACATCACGTACTTACGTACAGATGAAGGCTGGCTGTATCTGGCAGTGGTCATTGACCTGTGGTCACGTGCCGT    <  2:656956/143‑1
                                                                                                                                               gTGCCTGTGTCATAAAATCTGTTGGAGCAGGATTTTTACGCCAGTGGCCCGAACCAGAAGTGGGCAGGAGACATCACGTACTTACGTACAGATGAAGGCTGGCTGTATCTGGCAGTGGTCATTGACCTGTGGTCACGTGCCGT    <  2:45550/142‑1
                                                                                                                                               cgGCCTGTGTCAGAAAATCTGTTGGAGCAGGATTTTTACGCCAGTAGCCCGAACCAGAAGTGGGCAGGAGACATCACGTACTTACGTACAGATGAAGGCTGGCTGTATCTGGCAGTGGTCATTGACCTGTGGTCACGTGCCGT    <  1:588259/141‑1
                                                                                                                                                TGCCTGTGTCAGAAAATCTGTTGGAGCAGGATTTTTACGCCAGTGGCCCGAACCAGAAGTGGGCAGGAGACATCACGTACTTACGTACAGATGAAGGCTGGCTGTATCTGGCAGTGGTCATTGACCTGTGGTCACGTGCCGgt   >  1:967319/1‑141
                                                                                                                                                TGCCTGTGTCAGAAAATCTGTTGGAGCAGGATTTTTACGCCAGTGGCCCGAACCAGAAGTGGGCAGGAGACATCACGTACTTACGTACAGATGAAGGCTGGCTGTATCTGGCAGTGGTCATTGACCTGTGGTCACGTGCCGTT   >  1:798599/1‑143
                                                                                                                                                TGCCTGTGTCAGAAAATCTGTTGGAGCAGGATTTTTACGCCAGTGGCCCGAACCAGAAGTGAGCAGGAGACATCACGTACTTACGTACAGATGAAGGCTGGCGGTATCTGGCAGTGGTCATTGACCGGTGGTCACGTGCCGTT   >  1:276594/1‑143
                                                                                                                                                 GCCTGTGTCGGAAAATCTGTTGGGGCAGGATTTTTACGCCAGTGGCCCGAACCAGAAGTGGGCAGGAGACATCACGTACTTACGTACAGATGAAGGCTGGCTGTATCTGGCAGTGGTCATTGACCTGTGGTCACGTGCCGTTA  <  2:545606/143‑1
                                                                                                                                                 GCCTGTGTCAGAAAGTCTGGTGGAGCAGTATATGTACGCCAGGGGCCCGAACCAGGAGTGGGCAGCAGACATCAAGTGCTTACGTACAGATGAAGGCTGGCTGTATCTGGCAGTGGTCATTGACCTGTGGTCACGTGCCGTTA  <  1:768873/143‑1
                                                                                                                                                 GCCTGTGTCAGAAAATCTGTTGGAGCAGGATTTTTACGCCAGTGGCCCGAACCAGAAGTGGGCAGGAGACATCACGTACTTACGTACAGATGAAGGCTGGCTGTATCTGGCAGTGGTCATTGACCTGTGGTCACGTGCCGTTA  >  1:815231/1‑143
                                                                                                                                                 GCCTGTGTCAGAAAATCTGTTGGAGCAGGATTTTTACGCCAGTGGCCCGAACCAGAAGTGGGCAGGAGACATCACGTACTTACGTACAGATGAAGGCTGGCTGTATCTGGCAGTGGTCATTGACCTGTGGTCACGTGCCGTTA  >  2:887605/1‑143
                                                                                                                                                 GCCTGTGTCAGAAAATCTGTTGGAGCAGGATTTTTACGCCAGTGGCCCGAACCAGAAGTGGGCAGGAGACATCACGTACTTACGTACAGATGAAGGCTGGCTGTATCTGGCAGTGGTCATTGACCTGTGGTCACGTGCCGTTA  >  1:193954/1‑143
                                                                                                                                                 GCCTGTGTCAGAAAATCTGTTGGAGCAGGATTTTTACGCCAGTGGCCCGAACCAGAAGTGGGCAGGAGACATCACGTACTACAAACACGTATAAGGCGGGCTGTATCTGGCAGTGGTCATTGACCTGTGGTCACGTGCCGTTA  >  1:1043773/1‑143
                                                                                                                                                 GCCTGTGTCAGAAAATCTGTTGGAGCAGGATTGTTACGCCAGTGGCCCGAACCAGAAGTGGGCAGGAGACATCACGTACTTACGTACAGATGAAGGCTGGCTGTATCTGGCAGTGGTCATTGACCTGTGGTCACGTGCCGTTA  <  2:594519/143‑1
                                                                                                                                                 GCCTGTGGCAGAAAATCTGTTGGAGCAGGATTTTTACGCCAGTGGCCCGAACCAGAAGTGGGCAGGAGACATCACGTACTTACGTACAGATGAAGGCTGGCTGTATCTGGCAGTGGTCATTGACCTGTGGTCACGTGCCGTTA  <  1:1032323/143‑1
                                                                                                                                                 GCCGGTGTCAGAACCTCGGCTGGGGCAGAGTTGTGACGCCGGTGGCGCGAACCAGAAGGGGGCAGGAGTCATCACGTACTTACGTACAGATGAAGGCTGGCTGTATCTGGCAGTGGTCATTGACCTGTGGTCACGTGCCGTTA  <  1:299098/143‑1
                                                                                                                                                                                                                                                                                                 
CACTGCCAGATACAGCCAGCCTTCATCTGTACGTAAGTACGTGATGTCTCCTGCCCACTTCTGGTTCGGGCCACTGGCGTAAAAATCCTGCTCCAACAGATTTTCTGACACAGGCAGGCCGTGTGCGCGGTAGCTGACCGGGCTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/316036‑315892
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑c‑tgCCTGTGTCAGAAAATCTGTTGGAGCAGGATTTTTACGCCAGTGGCCCGAACCAGAAGTGGGCAGGAGACATCACGTACTTACGTACAGATGAAGGCTGGCTGTATCTGGCAGTGGTCATTGACCTGTGGTCACGTGCCGTTA  >  NC_000913/315923‑316064

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.