| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 508581 = | NA (NA) | 3 (0.070) +GTTCAGGCACAAGTTTGTAG |
3/222 | NT | NA | intergenic (+22/+294) | ybaQ/copA | putative DNA‑binding transcriptional regulator YbaQ/Cu(+) exporting P‑type ATPase |
| ? | NC_000913 | 508630 = | NA (NA) | intergenic (+71/+245) | ybaQ/copA | putative DNA‑binding transcriptional regulator YbaQ/Cu(+) exporting P‑type ATPase | |||||
GCGGCGGTTGATCTTTGGGAAGTTGAAAACAACATGCGCACCCAGGAAGAATTGGGACGGATTGAAACAGTGGCTGAATATTTGGCACGCCGTGAAGAGCGTGCAAAAAAGGTCGCGTAAGGCCAAAACATCGCTTCATCTCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATCCGAGCACCATTGCCTGATGCGACGCTTACCCGTCTTATCAGGCCTACAAACTTGTGCCTGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATCC > NC_000913/508440‑508720 | gcggcgGTTGATCGGTGGGAAGTTGAAAACACCATGCGCACCCAGGAAGAATTGGGACGGATTGAAACAGTGGCTGAATATTTGGCACGCCGTGAAGAGCGTGCAAAAAAGGTCGCGTAAGGCCAAAACATCGCTTCATCTCg < 2:320166/143‑1 (MQ=255) cggcggTTGATCTTTGGGAAGTTGAAAACAACATGCGCACCCAGGAAGAATTGGGACGGAGTGAAACAGTGGCTGAATATTTGGCACGCCGTGAAGAGCGTGCAAAAAAGGTCGCGTAAGGCCAAAACATCGCTTCATCTCGt > 1:886329/1‑143 (MQ=255) ggcggTTGATCTTTGGGAAGTTGAAAACAACATGCGCACCCAGGAAGAATTGGGACGGATTGAAACAGTGGCTGAATATTTGGCACGCCGTGAAGAGCGTGCAAAAAAGGTCGCGTAAGGCCAAAACATCGCCTACTCTCGTa > 2:731195/1‑143 (MQ=255) ttGATCTTTGGGAAGTTGAAAACAACATGCGCACCCAGGAAGAACTGGGACGGCTTGAAACAGTGGCTGAATATTTGGCACGCCGTGAAGAGCGTGCAAAAAAGGTCGCGTAAGGCCAGAACATCGCCTCATCTCGTAGGCCg > 2:764247/1‑143 (MQ=255) tttGGGAAGTTGAAAACAACATGCGCACCCAGGAAGAATTGGGACGGATTGAAACAGTGGCTGAATATTTGGCACGCCGTGAAGAGCGTGCAAAAAAGGTCGCGTAAGGCCAAAACATCGCTTCATCTCGTAGGCCGGATAAg > 1:373735/1‑143 (MQ=255) tttGGGAAGTTGAAAACAACATGCGCACCCAGGAAGAATTGGGACGGATTGAAACAGTGGCTGAATATTTGGCACGCCGTGAAGAGCGTGCAAAAAAGGTCGCGTAAGGCCAAAACATCGCTTCATCTCGTAGGCCGGATAAg > 1:920879/1‑143 (MQ=255) aaGTTGAAAACAACATGCGCACCCAGGAAGAATTGGGACGGATTGAAACAGTGGCTGAATATTTGGCACGCCGTGAAGAGCGTGCAAAAAAGGTCGCGTAAGGCCAAAACATCGCTTCATCTCGTAGGCCGGATAAGGCGTTc > 2:899305/1‑143 (MQ=255) tGAAAACAACATGCGCACCCAGGAAGAATTGGGACGGATTGAAACAGTGGCTGAATATTTGGCACGCCGTGAAGAGCGTGCAAAAAAGGTCGCGTAAGGCCAAAACATCGCTTCATCTCGTAGGCCGGATAAGGCGTTCAcgc > 1:630569/1‑143 (MQ=255) gAAAACAACATGCGCACCCAGGAAGAATTGGGACGGATTGAAACAGTGGCTGAATATTTGGCACGCCGTGAAGAGCGTGCAAAAAAGGTCGCGTAAGGCCAAGACATCGCATGAACTCGTAGCCCGGATAAGGCGCGCAcgca > 2:899551/1‑142 (MQ=255) gAAAACAACATGCGCACCCAGGAAGAATTGGGACGGATTGAAACAGTGGCTGAATATTTGGCACGCCGTGAAGAGCGTGCAAAAAAGGTCGCGTAAGGCCAAAACATCGCTTCATCTCGTAGGCCGGATAAGGCGTTCAcgcc > 2:559605/1‑143 (MQ=255) aaaCAACATGCGCACCCAGGAAGAATTGGGACGGATTGAAACAGTGGCTGAATATTTGGCACGCCGTGAAGAGCGTGCAAAAAAGGTCGCGTAAGGCCAAAGCATCGCTTCATCTCGTAGGCCGGATAAGGCGGTCAcgccgc > 1:398620/1‑143 (MQ=255) agaTGCGCACCGAGGAGGGGTTGGGACGGATTGAAACAGTGGCTGAATATTTGGCCCGCCGTGAAGAGCGTGCAAAAAAGGTCGCGTAAGGCCAAAACATCGCTTCATCTCGTAGGCCGGATGCGGCGTGAACGCCttatccg < 2:398333/141‑1 (MQ=255) gcgcACCCAGGAAGAATTGGGACGGATTGAAACAGTGGCTGAATATTTGGCACGCCGTGAAGAGCGTGCAAAAAAGGTCGCGTAAGGCCAAAACATCGCTTCATCTCGTAGGCCGGATAAGGCGTTCACGCCgcatccggcat > 2:951504/1‑143 (MQ=255) aGGAAGAATTGGGACGGATTGAAACAGTGGCTGAATATTTGGCACGCCGTGAAGAGCGTGCAAAAAAGGTCGCGTAAGGCCAAAACATCGCTTCATCTCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATCCGAGCAc > 1:360875/1‑143 (MQ=255) ggAAGAATTGGGACGGATTGAAACAGTGGCTGAATATTTGGCACGCCGTGAAGAGCGTGCAAAAAAGGTCGCGTAAGGCCAAAACATCGCTTCATCTCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATCCGAGCAcc > 1:511052/1‑143 (MQ=255) gaaTTGGGACGGATTGAAACAGTGGCTGAATATTTGGCACGCCGTGAAGAGCGTGCAAAAAAGGTCGCGTAAGGCCAAAACATCGCTTCATCTCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATCCGACCCCCATTg > 1:834618/1‑143 (MQ=255) ggATTGAAACAGTGGCGGAATATTTGGCACGCCGTGAAGAGCGTGCAAAAAAGGTCGCGTAAGGCAATAACGTCACTTCGCGTCAGAGAGCTGATAAGGCGTTCACGCCGCATCCGGCATCCGAGCACCATTGCCTGATGCGa < 2:223050/143‑1 (MQ=25) aTTGAAACAGTGGCTGAATATTTGGCACGCCGTGAAGAGCGTGCAAAAAAGGTCGCGTAAGGCCAAAACATCGCTTCATCTCGTAGGCCGGATACGGCGTTCACGCCGCATCCGGCATCCGAGCACCATTGCCTGaacccccg > 2:53360/1‑136 (MQ=255) tGAAACAGTGGCTGAATATTTGGCACGCCGTGAAGAGCGTGCAAAAAAGGTCGCGTAAGGCCAAAACATCGCTTCATCTCGTAGACCGGATAAGGCGTTCACGCCTCATCCGACATCCGAGCACCATTGCCTGATGCgcctct > 1:870836/1‑138 (MQ=255) aaaCAGTGGGTGAATATGTGGCGCGCCGGGAAGAGCGTGCAAAAAAGGTCGCGTAAGGCCAAAACATCGCTTCATCTCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATCCGAGCACCATTGCCTGATGCGACGCTTa < 1:962515/143‑1 (MQ=255) aaCAGTGGCTGAATATTTGGCACGCCGTGAATAGCGTGCAAAAAAGGTCGCGTAAGGCCAAAACATCGCTTCATCTCGTAGGCCGGATAAGGCGTTCACGCCCCCTCCGGCATCCGCGCACCATTGCCTGATGCGACGCTTAc > 1:98215/1‑143 (MQ=255) aGTGGTTGAATAGTTGGGGCGCCGTGAAGAGCGTGCAAAAAAGGCCGCGTAAGGCCAAAACATCGCTTCATCTCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATCCGAGCACCATTGCCTGATGCGACGCTTACCCg < 2:192956/143‑1 (MQ=25) aGTGGCTGAATATTTGGCACGCCGTGAAGAGCGTGCAAAAAAGGTCGCGTAAGGCCAAAACATCGCTTCATCTCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATCCGAGCCCCATTGCCTGATGCGACGCCTAccgc > 1:784757/1‑141 (MQ=255) gTGGCGGAATATTTGGCACGCCGTGAAGAGCGTGCAAAAAAGGTCGCGTAAGGCCAAAACATCGCTTCATCTCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATCCGAGCACCATTGCCTGATGCGACGCTTACCCGt < 2:612859/143‑1 (MQ=255) gggCTGAATATCTGGCCGGCCGTGAAGAGCGTGCAAAAAAGGTCGGGTAAGGCCAAAACATCGCTTCATCTCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATCCGAGCACCATTGCCTGATGCGACGCTTACCCGTc < 2:491487/142‑1 (MQ=255) gCTGAATATTTGGCACGCCGTGAAGAGCGTGCAAAAAAGGTCGCGTAAGGCCAAAACATCGCTTCATCTCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATCCGCGCACCATTGCCTGATGCGCCGCTTACCCGTCtt > 2:968746/1‑143 (MQ=255) tGAATATTTGGCACGCCGTGAAGAGCGTGCAAAAAAGGTCGCGTAAGGCCAAAACATCGCTTCATCTCGTAGCCCGGATAAGGCGTTCACGCCGCATCCGGCATCCGAGCACCATTGCCTGGTTCGACGCTTACCCGTCttct > 1:384132/1‑141 (MQ=255) gAATATTTGGCACGCCGTGAAGAGCGTGCAAAAAAGGTCGCGTAAGGCCAAAACATCGCTTCATCTCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATCCGAGCACCATTGCCTGATGCGACGCTTACCCGTCTTATc < 2:845246/143‑1 (MQ=255) ctttGGCACGCCGTGAAGGGCGTGCAAAAAAGGTCGCGTAAGGCCAAACCATCGCGTCATCTCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATCCGAGCACCATTGCCTGATGCGACGCTTACCCGTCTTATCAGGc < 1:98991/142‑1 (MQ=255) ttGGCACGCCGTGAAGAGCGTGCAAAAAAGGCCGCGTAAGGCCAAAACATCGCTTCATCTCGTAGGCCGGAGAAGGCGTTCACGCCACACCCGGCATCCGACCACCATTGCCTGACGCGACGCTTACCCGTCTCAACAGGccc > 2:697799/1‑142 (MQ=255) gCACGCCGTGAAGAGCGTGCAAAAAAGGTCGCGTAAGGCCAAAACATCGCTTCATCTCGTAGGCCGGATAAGGCGTGCACGCCGCATCCGGCATCCGAGCACCATTGACTGATGCACCGCGTACCCGTCTTCTCAGGCGTAcc > 2:170135/1‑142 (MQ=25) cACGCCGTGAAGAGCGTGCAAAAAAGGTCGCGTAAGGCCAAAACATCGCTTCATCTCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATCCGAGCACCATTGCCTGATGCGACGCTTACCCGTCTTATCAGGCCTACaa > 1:180487/1‑143 (MQ=255) aCGCCGTGAAGAGCGTGCAAAAAAGGTCGCGTAAGGCCAAAACATCGCTTCATCTCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATCCGAGCACCATTGCCTGATGCGACGCTTACCCGTCTTATCAGGCCTACaaa > 1:203288/1‑143 (MQ=255) cGCCGGCAAGAGCGAGCACAAAAGGGCTCGTAAGGCCAAAACATCGCCTCATCTCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATCCGAGCACCATTGCCTGATGCGACGCTTACCCGTCTTATCAGGCCTACAAAc < 2:773073/143‑1 (MQ=18) gCCGTGAAGAGCGTGCAAAAAAGGTCGCGTAAGGCCAAAACATCGCTTCATCTCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATCCGAGCACCATTGCCTGATGCGACGCTTACCCGTCTTATCAGGCCTACAAACt > 1:830661/1‑143 (MQ=255) gcctgataagacgggtaagcgtcgcatcaggcctacaaacttgtgcctgaacCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATCCGAGCACCATTGCCTGATGCGACGCTTACGCGTCTTAGCAGGCCTACAaaccc < 2:178803‑M1/91‑3 (MQ=255) ccGTGAAGAGCGTGCAAAAAAGGTCGCGTAAGGCCAAAACATCGCTTCATCTCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATCCGAGCACCATTGCCTGATGCGACGCTTACCCGTCTTATCAGGCCTACAAACtt > 1:594252/1‑143 (MQ=255) gTGAAGAGCGTGCAAAAAAGGTCGCGTAAGGCCAAAACATCGCTTCATCTCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATCCGAGCACCATTGCCTGATGCGACGCTTACCCGTCTTATCAGGCCTACAAACTtgt < 2:360875/143‑1 (MQ=255) ctgataagacgggtaagcgtcgcatcaggcctacaaacttgtgcctgaacCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATCCGAGCACCATTGCCTGATGCGACGCTTACGCGTc < 1:3347‑M1/72‑1 (MQ=255) ctgataagacgggtaagcgtcgcatcaggcctacaaacttgtgcctgaacCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATCCGAGCACCATTGCCTGATGCGACGCTTACGCGTc > 2:3347‑M1/51‑122 (MQ=255) tGAAGAGCGTGCAAAAAAGGTCGCGTAAGGTCAAAACATCGCTTCATCTCGTAGGCCGGCTAAGGCGTTCACGCCGCATCCAGCCTCCGCGCACCATTCCCTCATGCGACGCTGACCCGTCCTACCACGCCTCCAACCttctt > 2:345107/1‑140 (MQ=255) gagCGTGCAAAAAAGGTCGCGTAAGGCCAAAACATCGCTTCATCTCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATCCGAGCACCATTGCCTGATGCGACGCTTACCCGTCTTATCAGGCCTACAAACTTGTGCCTg > 2:589463/1‑143 (MQ=255) cGTGCAAAAAAGGTCGCGTAAGGCCAAAACATCGCTTCATCTCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATCCGAGCACCATTGCCTGATGCGACGCCTACCCGTCTTATCAGGCCTACAAACTTGTGCCTGAAc > 2:64889/1‑143 (MQ=255) gTGCAAAAAAGGTCGCGTAAGGCCAAAACATCGCTTCATCTCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATCCGAGCACCATTGCCTGATGCGACGCTTACCCGTCTTATCAGGCCTACCAACTTGTGCCTGAAcc > 1:79008/1‑143 (MQ=255) gTGCAAAAAAGGTCGCGGAAGGCCAAAACATCGCTTCATCTCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATCCGAGCACCATTGCCTGATGCGACGCTTACCCGTCTTATCAGGCCTACAAACTTGTGCCTGAAcc < 1:653301/143‑1 (MQ=255) aaaaaaGGTCGCGTAAGGCCAAAACATCGCTTCATCTCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATCCGAGCACCATTGCCTGATGCGACGCTTACCCGTCTTATCAGGCCTACAAACTTGTGCCTGAACCGTAg > 2:535787/1‑143 (MQ=255) aaaaaaGGTCGCGTAAGGCCAAAACATCGCTTCATCTCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATCCGAGCACCATTGCCTGATGCGACGCTTACCCGTCTTATCAGGCCTACAAACTTGTGCCTGAACCGTAg > 2:692524/1‑143 (MQ=255) aaaaaGGTCGCGTAAGGCCAAAACATCGCTTCATCTCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATCCGAGCACCATTGCCTGATGCGACGCTTACCCGTCTTATCAGGCCTACAAACTTGTGCCTGAACCGTAGg < 2:233834‑M1/143‑2 (MQ=255) aaaaaGGTCGCGTAAGGCCAAAACATCGCTTCATCTCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATCCGAGCACCATTGCCTGATGCGACGCTTACCCGTCTTATCAGGCCTACAAACTTGTGCCTGAACCGTAGg > 1:267770‑M1/1‑142 (MQ=255) aaaaaGGTCGCGTAAGGCCAAAACATCGCTTAATCTCGTAGGCCGGATCAGGCGTTAACGCCGCCTCCGGCATCCGAGCAGCATTGCCTGCTGCGACGCTGACCCGTCTTCTCCGGCCGAAAAACTTGAGCCTGGAGCGTAGg > 1:267776‑M1/1‑142 (MQ=255) aaaaGGTCGCGTAAGGCCAAAACATCGCTTCATCTCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATCCGAGCACCATTGCCTGATGCGACGCTTACCCGTCTTATCAGGCCTACAAACTTGTGCCTGAACCGTAGgc > 2:947921‑M1/1‑141 (MQ=255) aaGGTCGCGTAAGGCCAAAACATCGCTTCATCTCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATCCGAGCACCATTGCCTGATGCGACGCGTACACGTCTTATCAGGCCTACAAACTTGTGCCTCAACTGTAGtccg > 2:113296‑M1/1‑139 (MQ=255) gcgTAAGGCCAAAACATCGCTTCATCTCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATCCGAGCACCATTGCCTGATGCGACGCTTACCCGTCTTATCAGGCCTACAAACTTGTGCCTGAACCGTAGGCCGGATAAg > 1:677815/1‑143 (MQ=255) ccgTCAGGCCAAAGGACCGCGTCACAGCGTAGGCCGGATAAGGCGTTCGCGCCCCATCCGGCATCCGAGCACCATTGCCGGATGCGACGCTTACCCGTCTTATCAGGCCTACAAACTTGTGCCTGAACCGTAGGCCGGATAAg < 2:853723/142‑1 (MQ=14) cgTAAGGCCAAAACATCGCTTCATCTCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATCCGAGCACCATTGCCTGATGCGACGCTTACCCGTCTTATCAGGCCTACAAACTTGTGCCTGCACCGTAGGCCGGCTAAgg > 2:585718/1‑143 (MQ=255) gCCAAAACATCGCTTCATCTCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATCCGAGCACCATTGCCTGATGCGACGCTTACCCGTCTTATCAGGCCTACAAACCTGTGCCTGAACCGTAGGCCGGATAAGGCGTTTa > 2:856673/1‑143 (MQ=255) aaaaCATCGCTTCATCTCGTAGGACGGATGTTGATGACTCGCCTCATCCGGCATCCGAGCACCATTGCCTGATGCGACGCTTACCCGTCTTATCAGGCCTACAAACCTGTGCCTGAACCGTAGGCCGGATAAGGCGTTTAcgc > 2:325894/1‑143 (MQ=14) ttgagctcGTAGGCCGGATAAGGCGTTAACGCCGCATCCGGCATCCGAGCACCATTGCCCGATGCGACGCTTACCCGTCTTATCAGGCCTACAAACTTGTGCCTGAACCGTAGGCCGGATAAGGCGTTTACGCCgcatccggc < 2:523324/138‑1 (MQ=255) tctcGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATCCGAGCACCATTGCCTGATGCGACGCTTACCCGTCTTATCAGGCCTACAAACTTGTGCCTGAACCGTAGGCCGGATAAGGCGTTTACGCCgcatccagcatcc > 1:119832/1‑143 (MQ=255) | GCGGCGGTTGATCTTTGGGAAGTTGAAAACAACATGCGCACCCAGGAAGAATTGGGACGGATTGAAACAGTGGCTGAATATTTGGCACGCCGTGAAGAGCGTGCAAAAAAGGTCGCGTAAGGCCAAAACATCGCTTCATCTCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATCCGAGCACCATTGCCTGATGCGACGCTTACCCGTCTTATCAGGCCTACAAACTTGTGCCTGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATCC > NC_000913/508440‑508720 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |