| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 572471 | 52 (0.970) | 8 (0.200) +TGATCTTACCCAGCAATAGTGGACACGCGGCTAA |
7/194 | NT | 23.8% | coding (6/456 nt) | ybcN | DLP12 prophage; DNA base‑flipping protein |
| ? | NC_000913 | = 2170235 | 17 (0.320) | noncoding (65/1258 nt) | IS3 | repeat region | |||||
CCGTGATATTTTTGGCGGTCATTAATCCTTCGGCGATAAGCATTGTCGTACTTCCGCTGTCGAGAATAACGGTCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCATTCGCCTGAATTTCGCAGTGAAGCCCTGAAGCTTGCTGAACGCATCGGTGTTACTGCCGCAGCCCGTGAACTCAGCCTGTATGAATCACAACTCTAC > NC_000913/2170097‑2170376 | ccGTGATATTTTTGGCGGTCATTAATCCTTCGGCGATAAGCATTGTCGTACTTCCGCTGTCGAGAATAACGGTCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTCACCTCTGACTGAGAGTTTACTCACttag > 2:801849‑M2/1‑139 (MQ=255) tttttGGCTGTCCTTTATTCTTTGGCGATAAGCATTGTCGTACTTCCGCTGTCGATGATAACGGTCTGATCTTACACAGCAATCGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTTACTCACATGACAAAAACa < 2:277997/143‑1 (MQ=18) tttttGGCGGTCATTAATCCTTCGGCGATGAGCATTGTCGTACTTCCGCTGTCGAGAATAACGGTCTGATCGTACCCAGCAAGAGTGGACACGCGGCTACGTGAGTAAACGCGCAGGCAGCGGTGGAGTACGTGGCAAAAACa > 2:782661/1‑143 (MQ=255) tttttGGCGGTCATTAATCCTTCGGCGATAAGCATTGTCGTACTTCCGCTGTCGAGAATAACGGTCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACa < 1:939750/143‑1 (MQ=255) ttttGGCGGTCATTAATCCTTCGGCGATAAGCATTGTCGTACTTCCGCTGTCGAGAATAACGGTCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAg < 1:839079/143‑1 (MQ=255) ttcttgCGGTCATTAATCCGTCGGCCATAAGCATTGTCGTACTTCCGCTGTCGAGAATAACGGTCTGATCTTACCCCGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAg < 2:729017/138‑1 (MQ=255) ggCGGTCATTAATCCTTCGGCGATAAGCATTGTCGTACTTCCGCTGTCGAGAATAACGGTCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATc > 1:904299/1‑143 (MQ=255) gCGGTCATTAATCCTTCGGCGATAAGCATTGTCGTACTTCCGCTGTCGAGAATAACGGTCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCCGAGGTGACTCACATGACAAAAACAGTATCa > 1:741248/1‑143 (MQ=255) aTTAATCCTTCGGCGATAAGCATTGTCGTACTTCCGCTGTCGAGAATAACGGTCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACCAAAACAGTAGCGACCAgg > 1:971815/1‑142 (MQ=255) aTAAGCATTGTCGTACTTCCGCTGTCGAGAATAACGGTCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAAGCAGTAAAAAACCCCGTaaa > 1:120602/1‑143 (MQ=255) aaGCATTGTCGTACTTCCGCTGTCGAGAATAACGGTCTTATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACa < 1:511296/143‑1 (MQ=255) cATTGTCGTACTTCCGCTGTCGAGAATAACGGTCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACAGGACAAAAACAGTATCCACCAGTAAAACACACCGCAAACAGCa > 2:411687/1‑143 (MQ=17) aTTGTCGTACTTCCGCTGTCGAGAATAACGGTCTGATCTTACCCAGCAATAGTGGACACGCGGCTACGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGCCAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCAt > 1:306939/1‑143 (MQ=255) ttGTCGTACTTCCGCTGTCGAGAATAACGGTCTGATCTTACCTAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGAATAAACCAGTAAAAAAACCCGTAAAAAGCAtt > 2:801179/1‑143 (MQ=17) gTACTTCCGCTGTCGAGAATAACGGTCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGGGTAAACTCTCAGTCAGAGGTGACTCACATGCCAGAGACAGTTTCAACCTGTGTTTCTCCCCGTACACTGCATTCgaat > 1:15538/1‑140 (MQ=17) tCGAGAATAACGGTCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCATTCGCCTGAATTTCGCAGt > 1:17394/1‑143 (MQ=40) cGGTCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGAATCAACCAGTAAAAAACCCCGTAAACAGCATTCGCCTGACTTTCGCAGTGAAGCCCTGa > 2:423856/1‑143 (MQ=17) gTCTGATCTTACCCAGCCATACTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCATTCGCCTGAATTTCGCAGTGAAGCCCTGAAg < 1:15021/143‑1 (MQ=11) ccAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACttagccgcgtgtccactattgctgggtaagatcagttcacgcttcccctccgcagcggtcaaacgctagatgcaaagaattgccggt < 2:665793‑M2/143‑88 (MQ=255) cTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACttagccgcgtgtccactattgctgggtaagatcagttcacgcttcccctccgcagaggtcaaacgctagatgcaaagaattgcaggtgcatttctgcatctgtgaagg < 1:877632‑M2/143‑109 (MQ=255) tGAGTAAACTCTCAGTCAGAGGTGACTCACttagccgcgcgtccactattgctgggtaagatcagttcacgcttcccctccgcagaggtcaaacgctagatgcaaagaattgcaggtgcctttctgcatctgtgaagggagaa < 1:186515‑M2/143‑114 (MQ=255) gAGTAAACTCTCAGTCAGAGGTGACTCACttagccgcgtgtccactattgctgggtaagatcagttcacgcttcccctccgcagaggtcaaacgctagatgcaaagaattgcaggtgcatttctgcatctgtgaagggagaag < 2:907772‑M2/143‑115 (MQ=255) aGTAAACTCTCAGTCAGAGGTGACTCACatagccgcgtgtccactattgctgggtaagatcagttcacgcttcccctccgcagaggtcaaacgctagatgcaaagaattgcaggtgcattgatgcctgtgtgaagggagaata < 1:1037560‑M2/143‑116 (MQ=255) gTAAACTCTCAGTCAGAGGTGACTCACttagccgcgtgtccactattgctgggtaagatcagttcacgcttcccctccgcagaggtcaaacgctagatgcaaagaattgcaggtgcatttctgcatctgtgaagggagaagag < 2:164410‑M2/143‑117 (MQ=255) ttgACTCACgtagccgcgtgtccactattgctgggtaagatcagttcacgcttcccctccgcagaggtcaaacgctagatgcaaagaattgcaggtgcatttctgcatctgtgaagggagaagagagtttggattgtatgtgc > 1:232808‑M2/2‑9 (MQ=255) gTGCCTCCCtgaggcgcgtgtccactatgcctggggaagatcaggtcacggctccccttcgcagaggtgaaacgctaggtgcaaagaattgcaggtgcatttgtgcatctgtgaagggagaagagagtttggattgtatgtgc > 2:423480‑M2/1‑9 (MQ=255) aCttagccgcgtgtccactattgctgggtaagatcagttcacgcttcccctccgcagaggtcaaacgctagatgcaaagaattgcaggtgcattgctgcatctgtgaagggagaagagagtagggcatgtcggtgcgcatgaa < 2:662894‑M2/143‑142 (MQ=255) | CCGTGATATTTTTGGCGGTCATTAATCCTTCGGCGATAAGCATTGTCGTACTTCCGCTGTCGAGAATAACGGTCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCATTCGCCTGAATTTCGCAGTGAAGCCCTGAAGCTTGCTGAACGCATCGGTGTTACTGCCGCAGCCCGTGAACTCAGCCTGTATGAATCACAACTCTAC > NC_000913/2170097‑2170376 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |