New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	644857 =	48 (0.890)	3 (0.060)	3/246	NT	6.3%	coding (147/807 nt)	rna	RNase I
	?	NC_000913	644879 =	44 (0.870)					coding (125/807 nt)	rna	RNase I

CCGATTTAGGCAATCCTGGCCACAGACCATGTACGGTCAGAAAATCAGCTTTGTTGGTCGTTTCGGTTTGCAGGCGACATTCATCTCGTTCGTTACGATTTCGATCGTGTTGACTCTGGCAAAATCCGGTTTGCCAGGAGAGGGCCAGGACATAGCGATCAAAATCGCCATACTGTTTTGCCTGCAACGCTAAGGCGTTGGCAGAAGAGAAGGGAAGCAGAGAAACCG‑CGAGCAACGCGGCGTTACGCCAGAATGCTTTCATAATGGGTGTGGAACTCAT  >  NC_000913/644742‑645021                                                                                                                                          |                                                                                                                                                ccGAGTTAGGCAATCCTGGCCACAGACCATGTACGGTCAGAAAATCAGCTTTGTTGGTCGTTTCGGTTTGCAGGCGACATTCATCTCGTTCGTTACGATTTCGATCGTGTTGACTCTGGCAAAATCCGGTTTGCCAGGAGAgg                                                                                                                                            <  2:376611/143‑1 (MQ=255)   gATTTAGGCAATCCTGGTCACAGACCATGTACGGTCAGAAAATCAGCTTTGTTGGTCGTTTCGGTTTGCAGGCGACATTCATCTCGTTCGTTACGATTTCGATCGTGTTGACTCTGGCAAAATCCGGTTTGCCAGGAGAGGGc                                                                                                                                          <  2:500177/143‑1 (MQ=255)       tcggCAAGCCTGGCCACAGACCATGTACGGTCAGAAAATCAGCTTTGTTGGTCGTTTCGGTTTGCAGGCGACATTCATCGCGTTCGTTACGATTTCGATCGTGTTGACTCTGGCAAAATCCGGTTTGCCAGGAGAGGGCCAgg                                                                                                                                      <  2:355401/141‑1 (MQ=255)       tAGGCAATCCTGGCCACAGACCATGTACGGTCAGAAAATCCGCTTTGTTGGTCGTTTCGGTTTGCAGGCGACATTCATCTCGTTCGTTACGATTTCGATCGTGTTGACTCTGGCAAAATCCGGTTTGCCAGGAGAGGGCCAgg                                                                                                                                      <  1:280396/143‑1 (MQ=255)         ggCAATCCTGGCCACAGACCATGTACGGTCAGAAAATCAGCTTTGTTGGTCGTTTCGGTTTGCAGGCGACATTCATCTCGTTCGTTACGATTTCGATCGTGTTGACTCTGGCAAAATCCGGTTTGCCAGGAGAGGGCCAGGAc                                                                                                                                    >  2:980322/1‑143 (MQ=255)         ggCAATCCTGGCCACAGACCATGTACGGTCAGAAAATCAGCTTTGTTGGGCGTTTCGGTTTGCAGGGGACATTCATCTCGTTCGTTACGATTTCGATCGTGTTGACTCTGCCAAACTCCGTGTCGCCAGGCGACGGCCCggcc                                                                                                                                    >  2:590480/1‑141 (MQ=255)               gcgtgctcggcggtttttgtgcttccgttttcttctgctaatgccttagcgttgcaggcaaaacagtatggcgattttgtttgctatgtcctggccctctcCTGGCAAAATCCGGTTTGCCTGGAGAGGGCCAGGACATAGCg                                                                                                                              >  2:360804‑M1/102‑143 (MQ=255)                cgttgctcgcggtttctctgcttcccttctctgctgccaacgccttcgcgttgcaggcaaaacagtatggcgagtttgatcgctatgtcctggccctctcCTGGCAAAATCCGGTTTGCCAGGAGAGGGCCAGGACATAGCGa                                                                                                                             >  2:767463‑M1/101‑143 (MQ=255)                 tGGCCACAGACCATGTACGGTTAGAAAATCAGTTTTGTTGGTCGTTTCGGTTTGCAGGAGACATTCATCTCGTTCGGTACGATTTCGATCGTGTTGACGCTGGCAAAATCCGGTTTGCCAGGAGAGGGCCAGGACATAGCGAt                                                                                                                            <  1:998183/143‑1 (MQ=255)                  ggCCACAGACCATATCCGGTCAGAAAATCAGCTTTGTTGGTCTTTTCGGTTTTCAGCCTACATTCATATCGTTCGTTATGATTTCGATCGTGTTGACTCTGGCAAAATCCGGTTTGCCAGGAGAGGGCCAGGACATAGCGATc                                                                                                                           <  2:853788/143‑1 (MQ=255)                      acaGACCATGTACGGTCAGAAAATCAGCTTTGTTGGTCGTTTCGGTTTGCAGGCGACATTCATCTCGTTCGTTACGATTTCGATCGTGTTGACTCTGGCAGAATCCGGTTTGCCAGGAGAGGGCCAGGACATACGGATCcaac                                                                                                                       >  2:320797/1‑142 (MQ=255)                          gccATGTACGGTCAGAAAATCAGCTGGGTTGGTCGTGTCGGTGTGCAGGCGACATTCATCTCGTTCGTTACGATTTCGATCGTGTTGACTCTGGCAAAATCCGGTTTGCCAGGAGAGGGCCAGGACATAGCGATCAAAATCGc                                                                                                                   <  2:409025/142‑1 (MQ=255)                            caggtccGGTCAGAAAATCAGCTTTGTTGGTCGTTTCGGTTTGCAGGCGACATTCATCTCGTTCGTTACGATTTCGATCGTGTTGACTCTGGCAAAATCCGGTTTGCCAGGAGAGGGCCAGGACATAGCGATCAAAATCGCCa                                                                                                                 <  1:436686/137‑1 (MQ=255)                                    gTCAGAAAATCAGCTTTGTTGGTCGTTTCGGTTTGCAGGCGACATTCATCTCGTTCGTTACGATTTCGATCGTGTTGACTCTGGCAAAATCCGGTTTGCCAGGAGAGGGCCAGGACATAGCGATCAAAATCGCCATACTGttt                                                                                                         >  1:209473/1‑143 (MQ=255)                                     tcggAAAATCAGCTTTGTTGGTCGTTTCGGTTTGCAGGCGACATTCATCTCGTTCGTTACGATTTCGATCGTGTTGACTCGGGCAAAATCCCGTTTGCCAGGGGAGGGCCAGGACATAGCGATCAAAATCGCCATACTGtttt                                                                                                        <  2:335804/140‑1 (MQ=255)                                        gAAAATCAGCTTTGGTGGTCGTTTCGGTTTGCAGGCGACATTCATGTCGTTCGTTACGATTTCGATCGTGTTGACTCTGGCAAAATCCGGTTTGCCAGGAGAGGGCCAGGACATAGCGATCAAAATCGCCATACTGTTTTGcc                                                                                                     <  2:911085/143‑1 (MQ=255)                                         aaaaTCAGCTTTGTTGGTCGTTTCGGTTTGCAGGCGACATTCATCTCGTTCGTTACGATTTCGATCGTGTTGACTCTGGCAAAATCCGGTTTGCCAGGAGAGGGCCAGGACATAGCGATCAAAATCGCCATACTGTTCTGCCt                                                                                                    >  1:471486/1‑143 (MQ=255)                                             tCAGCTTTGTTGGTCGTTTCGGTTTGCAGGCGACATTCATCTCGTTCGTTACGATTTCGATCGTGTTGACTCTGGCAAAATCCGGTTTGCCAGGAGAGGGCCAGGACATAGCGATCAAAATCGCCATACTGTTTTGCCTGCaa                                                                                                <  1:258179/143‑1 (MQ=255)                                               aGCTTTGTTGGTCGTTTCGGTTTGCAGGCGACATTCATCTCGTTCGTTACGATTTCGATCGTGTTGACTCTGGCAAAATCCGGTTTGCCAGGAGAGGGCCAGGACATAGCGAGCAAAATCGCCATACTGTTTTGCCTGCAACg                                                                                              >  2:562428/1‑143 (MQ=255)                                                gCTTTGTTGGTCGTTTCGGTTTGCAGGCGACATTCATCTCGTTCGTTACGATTTCGATCGTGTTGACTCTGGCAAAATCCGGTTTGCCAGGAGAGGGCCAGGACATAGCGATCAAAATCGCCATACTGTTTTGCCTGCAACGc                                                                                             <  1:404703/143‑1 (MQ=255)                                                gCTTTGTTGGTCGTTTCGGTTTGCAGGCGACATTCATCTCGTTCGTTACGATTTCGATCGTGTTGACTCTGGCAAAATCCGGTTTGCCAGGAGAGGGCCAGGACATAGCGATCAAAATCGCCATACTGTTTTGCCTGCAACGc                                                                                             <  1:431732/143‑1 (MQ=255)                                                  tttGTTGGTCGTTTCGGTTTGCAGGCGACATTCATCTCGTTCGTTACGATTTCGATCGTGTTGACTCTGGCAAAATCCGGTTTGCCAGGAGAGGGCCAGGACATAGCGATCAAAATCGCCATACTGTTTTGCCTGCAACGCTa                                                                                           >  1:857119/1‑143 (MQ=255)                                                   gtgttgGTCGTGTCGGTTTGCAGGCGACATTCATCTCGTTCGTTACGATTTCGATCGTGTTGACTCTGGCACAATCCGGTGTGCAAGGGCAGGGCCAGGACATAGCGATCAAAATCGCCATACTGTTTTGCCTGCAACGCTaa                                                                                          <  2:1025992/142‑1 (MQ=255)                                                         gTCGTTTCGGTTTGCAGGCGACATTCATCTCGTTCGTTACGATTTCGGGCGAGGGGACGCTGGCAAAATCCGGTTTGCCAGGAGAGGGACAGGCCGTAGGCATCAAAATCGCCGGACAGATTTGCCTGCAACGCAAAgggaat                                                                                    >  2:688534/1‑139 (MQ=255)                                                          tCGTTTCGGTTTGCAGGCGACATTCATCTCGTTCGTTACGATTTCGATCGTGTTGACTCTGGCAAAATCCGGTTTGCCAGGAGAGGGCCAGGACATAGCGATCAAAATCGCAATACTGTTTTGCCTGCAACGCTAAGGCGTTg                                                                                   <  2:921246/143‑1 (MQ=255)                                                           cGTTCCGGGTTGCAGGCGACATTCATCTCGTTCGTTACGATTTCGATCGTGTTGCCTCTGGCACAATCCCGTTTGGCTGGATAGGGCCAGGACATAGCGATCAAAATCGCCATACTGTTTTGCCTGCAACGCTAAGGCGTTgg                                                                                  <  1:395488/143‑1 (MQ=255)                                                               tCGTTTTGCAGGCGACATTCATCTCGTTCGTTAGGATTTCGATCGTGTGGCCTCTGGCAAAATCCGGTTTG‑CAGGAGAGGGCCAGGACATAGCGATCAAAATCGCCATACTGTTTTGCCTGCAACGCTAAGGCGTTGGCagaa                                                                             <  1:781896/143‑1 (MQ=255)                                                               tCGGGTTGCAGGCGACATTCATCTCGTTCGTTACGATTCCGATCGTGTTGACTCTGGCAAAATCCGGTTTGCCAGGAGAGGGCCAGGACATAGCGATCAAAATCGCCATACTGTTTTGCCTGCAACGCTAAGGCGTTGGCaga                                                                              <  1:103328/143‑1 (MQ=255)                                                                  gTTTGCAGGCGACATTCATCTCGTTCGTTACGATTTCGATCGTGTTGACTCTGGCAAAATCCGGTTTGCCAGGAGAGGGCCAGGACATAGCGATCACAATCGCCATACTGTTTTGCCTGCAACGCTAAGGCGTTGGCggaaga                                                                           >  1:559606/1‑143 (MQ=255)                                                                    ttGCAGGCGACATTCATCTCGTTCGTTACGATTTCGATCGTGTTGACTCTGGCAAAATCCGGTTTGCCAGGAGAGGGCCAGGACATAGCGATCAAAATCGCCATACGGTTTTGCCTGCAACGCTAAGGCGTTGGCagaagaga                                                                         <  1:683137/143‑1 (MQ=255)                                                                       gcgcagACATTCATGTCGTTCGTTACGATTTCGATCGTGTTGACTCTGGCAAAATCCGGTTTGCCAGGAGAGGGCCAGGACATAGCGATCAAAATCGCCATACTGTTTTGCCTGCAACGCTAAGGCGTTGGCAGAAGAGAAgg                                                                      <  2:30593/138‑1 (MQ=255)                                                                       cAGGCGACATTCATCTCGTTCGTTACGATTTCGATCGTGTTGACTCTGGCAAAATCCGGTTTGCCAGGAGAGGGCCAGGACATAGCGATCAAAATCGCCATACGGTTTTGCCTGCAACGCTAAGGCGTTGGCAGAAGAGAAgg                                                                      >  1:798750/1‑143 (MQ=255)                                                                              cATTCATCTCGTTCGTTACGATTTCGATCGTGTTGACTCTGGCAAAATCCGGTTTGCCAGGAGAGGGCCAGGACATAGCGATCAAAATCGCCATACTGTTTTGCCTGCAACGCTAAGCCGTTGGCAGAAGAGAAGGGAAGcgg                                                               >  2:154043/1‑141 (MQ=255)                                                                                      tcgttcgtTACGATTTCGATCGTGTTGACTCTGGCAAAATCCGGTTTGCCAGGAGAGGGCCAGGACATAGCGATCAAAATCGCCATACTGTTTTGCCTGCAACGCTAAGGCGTTGGCAGAAGAGAAGGGAAGCAGAGAAACcg                                                       >  2:309725/1‑143 (MQ=255)                                                                                        gttcgttACGATTTCGACCGTGTTGACTCTGGCAAAAGCCGGTTTGCCAGGAGAGGGCCCGGACATAGCGATCAAAATCGCCATACTGTTTTGCCTGCAACGCTAAGGCGCTGGCAGAAGAGAAGGGAAGCAGAGAAACcg‑cg                                                    <  1:658590/143‑1 (MQ=255)                                                                                         gtcgtgACGATTGCGAGCGTGTTGACTCTCGCAAAATCCGGTTTGCCAGGAGAGGGCCAGGACATAGCGATCAAAATCGCCATACTGTTTTGCCTGCAACGCTAAGGCGTTGGCAGAAGAGAAGGGAAGCAGAGAAACCG‑CGa                                                   <  2:202056/142‑1 (MQ=255)                                                                                             ttACGATTTCGATCGTGTTGACTCTGGCAAAATCCGGTTTGCCAGGAGAGGGCCAGGACATAGCGATCAAAATCGCCATACTGTTTTGCCTGCAACGCTAAGGCGTTGGCAGAAGGGAAGGGAAGCAGAGAAACCG‑CGAGCag                                               >  1:790711/1‑142 (MQ=255)                                                                                             ttACGATTTCGATCGTGTTGACTCTGGCAAAATCCGGTTTGCCAGGAGAGGGCCAGGACATAGCGATCAAAATCGCCATACTGTTTTGCCTGCAACGCTAAGGCGTTGGCAGAAGAGAAGGGAAGCAGAGAAACCG‑CGAGCaa                                               >  1:71401/1‑143 (MQ=255)                                                                                             ttACGATTTCGATCGTGTTGACTCTGGCAAAATCCGGTTTGCCAGGAGAGGGCCAGGACATAGCGATCAAAATCGCCATACTGTTTTGCCTGCAACGCTAAGGCGTTGGCAGAAGAGAAGGGAAGCAGAGAAACCG‑CGAGCaa                                               >  2:549253/1‑143 (MQ=255)                                                                                             ttACGATTTCGATCGTGTTGACTCTGGCAAAATCCGGTTTGCCAGGAGAGGGCCAGGACATAGCGATCAAAATCGCCATACTGTTTTGCCTGCAACGCTAAGGCGTTGGCAGAAGAGAAGGGAAGCAGAGAAACCG‑CGAGCaa                                               >  1:32719/1‑143 (MQ=255)                                                                                               tcgctatgtcctggccctctcctggcaaaccggattttgccagGAGAGGGCCAGGACATAGCGATCAAACTCGCCATACTGTTTTGCCTGCAACGCGAAGGCGTTGGCAGCAGAGAAGGGAAGCAGAGAAACCG‑CGAGCAAcg                                             >  2:767463‑M2/44‑143 (MQ=255)                                                                                               aCGATTTCGATCGTGTTGACTCTGGCAAAATCCGGTTTGCCAGGAGAGGGCCAGGACATAGCGATCAAAATCGCCATACTGTCTTGCCTGCAACGCTAAGGCGTTGGCAGAAGAGAAGGGAAGCAGAGAAACCG‑CGAGCAAcg                                             >  2:849842/1‑143 (MQ=255)                                                                                                cgctatgtcctggccctctccaggcaaaccggattttgccagGAGAGGGCCAGGACATAGCAAACAAAATCGCCATACTGTTTTGCCTGCAACGCTAAGGCATTAGCAGAAGAAAACGGAAGCACAAAAACCGCCGagcacgc                                             >  2:360804‑M2/43‑140 (MQ=255)                                                                                                 gATTTCGATCGTGTTGACTCTGGCAAAATCCGGTTTGCCAGAAGAGCGCCAGGACATAGCGATCAAAATCGCCATACTGTTTTGCCTGCAACGCTAAGGCGCTGGCAGAAGACAAGAGAAGCAGAGACACCG‑CCAGCAAcccg                                           >  2:851320/1‑143 (MQ=255)                                                                                                        aTCGTGTTGACTCTGGCCAAACCCGGTTTGCCAGGTGAGGGACAGGACATAGCGATCAAAATCGCCATACTGTTTGGCCTGCAACGCTAAGGCGTTGGCAGAAGAGAAGGGAAGCAGAGAAACCG‑CGAGCAACGCGGCGTTAc                                    <  2:1022659/143‑1 (MQ=255)                                                                                                        aTCGTGTTGACTCTGGCAAAATCCGGTTTGCCAGGAGAGGGCCAGGACATAGCGATCAAAATCGCCATACTGTTTTGCCTGCAACGCTAAGGCGTTGGCAGAAGAGAAGGGAAGCAGAGAAACCG‑CGAGCAACGCGGCGTTAc                                    >  2:435444/1‑143 (MQ=255)                                                                                                              ttGACTCTGGCAAAATCCGGTTTGCCAGGAGAGGGCCAGGACATAGCGATCAAAATCGCCATACTGTTTTGCCGGCAACGCGAAGGGGTTGGAAGGAGAGAAGGGGAGCAGAGAAACGG‑CGAGCAACGCGGCGTGACggagga                              >  1:807111/1‑138 (MQ=255)                                                                                                                gACTCTGGCAAAATCCGGTTTGCCAGGAGAGGGCCAGGACATAGCGATCAAAATCGCCATACTGTTTTGCCTGCAACGCTAAGGCGTTGGCAGAAGAGAAGGGAAGCAGAGAAACCG‑CGAGCAACGCGGCGCTACGCCAGAAt                            >  2:898687/1‑143 (MQ=255)                                                                                                                    ctggcaaaccggattttgccagGAGAGGGCCAGGACATAGCGATCAAAATCGCCATACTGTTTTGCCTGCAACGCTAAGGCGTCGGCCGAAGAGAAGGGAAGCCGAGCAACCG‑CGAGCAACGCGGCGTTACGCCAGAATGCtt                        >  2:520698‑M2/23‑143 (MQ=255)                                                                                                                     TGGCAAAATCCGGTTTGCCAGGAGAGGGCCAGGACATAGCGATCAAAATCGCCATACTGTTTTGCCTGCAACGCTAAGGCGTTGGCAGAAGAGAAGGGAAGCAGAGACACCG‑CGAGCAACGCGGCGTTACGCCAGAATGGttt                       <  1:494712‑M1/143‑1 (MQ=255)                                                                                                                       GCAAAATCCGGTTTGCCAGGAGAGGGCCAGGACATAGCGATCAAAATCGCCATACTGTTTTGCCTGCAACGCTAAGGCGTTGGCAGAAGAGAAGGGAAGCAGAGAAACCG‑CGAGCAACGCGGCGTTACGCCAGAATGCTTtcc                     <  2:201485‑M1/143‑2 (MQ=255)                                                                                                                        CAAAATCCGGTTTGCCAGGAGAGGGCCAGGACATAGCGATCAAAATCGCCATACTGTTTTGCCTGCAACGCTAAGGCGTTGGCAGAAGAGAAGGGAAGCAGAGAAACCG‑CGAGCAACGCGGCGTTACGCCCGAAGGCTGTCAt                    <  2:107464‑M1/143‑1 (MQ=255)                                                                                                                         AAAATCCGGTTTGCCAGGAGAGGGCCAGGACATAGCGATCAAAATCGCCATACTGTTTTGCCTGCAACGCTAAGGCGTTGGCAGAAGAGAAGGGAAGCAGAGAAACCG‑CGAGCAACGCGGCGTTAAGCCAGAATGCtttccta                   <  2:360938‑M1/143‑4 (MQ=255)                                                                                                                           AATCCGGTTTGCCAGGAGAGGGCCAGGACATAGCGATCAAAATCGCCATACTGTTTTGCCTGCAACGCTAAGGCGTTGGCAGAAGAGAAGGGAAGCAGAGAAACCG‑CGAGCAACGCGGCGTTACGCCAGAATGCTTTCATAAt                 <  1:491864‑M1/143‑1 (MQ=255)                                                                                                                                      ccagGAGAGGGCCAGGACATAGCGATCAAAATCGCCATACGGGTTTGCCTGCAACGCTAAGGCGTTGGCAGAAGAGAAGGGAAGCAGAGAAACCG‑CGAGCAACGCGGCGTTACGCCAGAATGACTTCAGAATGGGTGTGGAAc      >  2:362912‑M2/5‑143 (MQ=255)                                                                                                                                        agGAGAGGGCCAGGACATAGCGATCAAAATCGCCATACTGTTTTGCCTGCAACGCTAAGGCGTTGGCAGAAGAGAAGGGAAGCAGAGAAACCG‑CGAGCAACGCGGCGTTACGCCAGAATGCTTTCATAATGGGTGTGGAACTc    >  1:407469‑M2/3‑143 (MQ=255)                                                                                                                                          gagaGGGCCAGGACATAGCGATCAAAATCGCCATACTGTTTTGCCTGCAACGCTCAGGCGTTGGCAGAAGAGAAGGGAAGCAGAGAAACCG‑CGAGCAACGCGGCGTTACGCCAGAATGCTTTCATAATGGGTGTGGACCTcat  >  2:327901/1‑143 (MQ=255)                                                                                                                                          gagaGGGCCAGGACATAGCGATCAAAATCGCCATACTGTTTTGCCTGCAACGCTAAGGCGTTGGCAGAAGAGAAGGGAAGCAGAGAAACCG‑CGAGCAACGCGGCGTTACGCCAGAATGCTTTCATAATGGGTGTGGAACGcat  >  2:333973/1‑143 (MQ=255)                                                                                                                                          |                                                                                                                                                CCGATTTAGGCAATCCTGGCCACAGACCATGTACGGTCAGAAAATCAGCTTTGTTGGTCGTTTCGGTTTGCAGGCGACATTCATCTCGTTCGTTACGATTTCGATCGTGTTGACTCTGGCAAAATCCGGTTTGCCAGGAGAGGGCCAGGACATAGCGATCAAAATCGCCATACTGTTTTGCCTGCAACGCTAAGGCGTTGGCAGAAGAGAAGGGAAGCAGAGAAACCG‑CGAGCAACGCGGCGTTACGCCAGAATGCTTTCATAATGGGTGTGGAACTCAT  >  NC_000913/644742‑645021

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.