New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 1234589	53 (0.980)	3 (0.060)	3/250	NT	5.6%	coding (129/1542 nt)	nhaB	Na(+):H(+) antiporter NhaB
	?	NC_000913	= 1234598	50 (0.970)					coding (120/1542 nt)	nhaB	Na(+):H(+) antiporter NhaB

CGTGTTCCGCGCTGGTCATGCCGATGAATACCGCTTCGATAGCCAACAGACCACCGGGGAGCAGCGGGTAGCATTTCAGGGCCATCGCCAGAGTGAAAATAAATTCCGCTACCAGCAACCAGCCCGCGACGAAAGGGCTGATG‑AGGAAAATTAACGGGTTTACGATTAAGAAAATGATGAGGGCGAGTTTGTACCAGTCGGGGGACTGGCCCAAAAAATTGCGCCATAGCGCGCGGCCCCAGGAGATCTCCATGATGGTTTCCCTTA  >  NC_000913/1234465‑1234731                                                                                                                                      |                                                                                                                                       cGTGTTCCGCGCTAGTCATGCCGTTGAATACCGCTTCGATAGCCAACAGACCACCGGGGAGCAGCGGGTAGCATTTCAGGGCGAGCGCCAGAGTGAAAATAAATTCCGCTACCAGCAACCAGCCCGCGACGAAAGGGCtgatg                                                                                                                               <  1:518449/143‑1 (MQ=255)   tgtTCCGCGCTGGTCCTGCCGATGAATACCGCTGCGATAGCCAACAGACCGCCGGGGAGCAGCGGGTAGCATTTCAGGGCCATCGCCAGAGTGAAAATAAATTCCGCTACCAGCAACCAGCCCGCGACGAAAGGGCTGATG‑Ag                                                                                                                            <  2:401973/143‑1 (MQ=255)               gTCATGCCGATGAATACCGCTTCGATAGCCAACAGACCACCGGGGAGCAGCGGGTAGCATTTCAGGGCCATCGCCAGAGTGAAAATAAATTCCGCTACCAGCAACCAGCCCGCGACGAAAGGGCTGATG‑AGGAAAATTAACgg                                                                                                                <  1:332938/143‑1 (MQ=255)                      cGATGAATACCGCTTCGATAGCCAACAGACCACCGGGGAGCAGCGGGTAGCATTTCAGGGCCAACGCCAGAGTGAAAATAAATTCCGCTACCAGCAACAAGCCCGAGACGAAAGGGCTGATG‑AGGAAAATTAACGGGAGTACg                                                                                                         >  2:809574/1‑143 (MQ=255)                       gATGAATACCGCTTCGATAGCCAACAGACCACCGGGGAGCAGCGGGTAGCATTTCAGGGCCATCGCCAGAGTGAAAATAAATTCCGCTACCAGCAACCAGCCCGCGACGAAAGGGCTGATG‑GGGAAAATTTACGGGTTTCCGa                                                                                                        >  1:264208/1‑143 (MQ=255)                                  cTTCGATAGGCAACAGGCCACCGGGGAGCAGGGGGTAGCATTTCAGGGCCATCGCCAGAGTGAAAATAAATCCCGCTACCAGCAACCAGCCCGCGACGAAAGGGCTGATG‑AGGAAAATTAACGGGTTTACGATTAAGAAAatg                                                                                             <  1:37579/143‑1 (MQ=255)                                   tgcGATAGCCAAGAGACCACCGGGGAGCAGCGGGTAGCATTTCAGGGCCATCGCCAGAGTGAAAATAAATTCCGCTACCAGCAACCAGCCCGCGACGAAAGGGCTGATG‑AGGAAAATTAACGGGTTTACGATTAAGAAAatga                                                                                            <  2:702057/141‑1 (MQ=255)                                        tAGCCAACCGACCACCGGGTGGCAGCGGGTAGCATTTCAGGGCCATCGCCAGAGTGAAAATAAATTCCGCTACCAGCAACCAGCCCGCGACGAAAGGGCTGATG‑AGGAAAATTAACGGGTTTACGATTAAGAAAATGATGAgg                                                                                       <  2:436322/143‑1 (MQ=255)                                        tAGCCAACAGACCACCGGGGAGCCGCGAGTAGCCTGTCAAGGCCATCGCCAGAGTGAAAATAAATTCCGCTACCAGCAACCAGCCCGCGACGAAAGGGCTGATG‑AGGAAAATTAACGGGTTTACGATTAAGAAAATGATGAgg                                                                                       >  1:1002047/1‑143 (MQ=255)                                         aGCCAACAGACCACCGGGGAGCAGCGGGTAGCATTTCAGGGCCATCGCCAGAGTGAAAATAAATTCCGCTACCAGCAACCAGCCCGCGACGAAAGGGCTGATG‑AGGAAAATTAACGGGTTTACGATTAAGAAAATGATGAggg                                                                                      <  1:638789/143‑1 (MQ=255)                                         aGCCAACAGACCACCGGGGAGCAGCGGGTAGCATTTCAGGGCCATCGCCAGAGCGAAAATAAATTCCGCTACCAGCGACCAGCCCGCGACGAAAGGGCTGATG‑AGGAAAATTAACGGGTTTACGATTAAGACAATGAgggggg                                                                                      >  2:249424/1‑143 (MQ=255)                                             aaCAGACCACCGGGGAGCAGCGGGTAGCATTTCAGGGCCATCGCCCGAGTGAAAATAAATTACGAGACCAGCAACCAACACGCGACGAAAGGGCTGATG‑AGGAAAATTAACGGGGGTACGCTGAAGCAACTGATGAGGGCGAg                                                                                  >  2:406918/1‑143 (MQ=255)                                             aaCAGACCACCGGGGAGCAGCGGGTAGCATTTCAGGGCCATCGCCAGAGTGAAAATAAATTCCGCTACCAGCAACCAGCCCGCGACGaaa                                                                                                                                        >  2:777477/1‑90 (MQ=255)                                             aaCAGACCACCGGGGAGCAGCGGGTAGCATTTCAGGGCCATCGCCAGAGTGAAAATAAATTCCGCTACCAGCAACCAGCCCGCGACGaaa                                                                                                                                        <  1:777477/90‑1 (MQ=255)                                                 gACCACCGGGGAGCAGCGGGTAGCATTTCAGGGCCATCGCCAGAGTGAAAATAAATTCCGCTACCAGCAACCAGCCCGCGACGAAAGGGCTGATG‑AGGAAAATTAACGGGTTTACGATTAAGAAAATGATGAGGGCGAGTTTg                                                                              >  1:182933/1‑143 (MQ=255)                                                   ccaccGGGGAGCAGCGGGTAGCATTTCAGGGCCATCGCCAGAGTGAAAATAAATTCCGCTACCAGCAACCAGCTCGCGACGAAAGGGCTGATG‑AGGAAAATTAACGGGTTTACGATTAAGAAAATGATGAGGGCGAGTTTGTa                                                                            <  1:752836/143‑1 (MQ=255)                                                    caccGGGGAGCAGCGGGTAGCATTTCAGGGCCATCGCCAGAGTGAAAATAAATTCCGCTACCAGCAACCAGCGTGCGACGAAAGGGCTGATG‑AGGAAAATTCACGGGATTACGAGTAAGACGATGATGAGGGTGAGGTTGtcc                                                                           >  2:389981/1‑141 (MQ=255)                                                    caccGGGGAGCAGCGGGTAGCATTTCAGGGCCATCGCCAGAGTGAAAATAAATTCCGCTACCAGCAACCAGCCCGCGACGAAAGGGCTGCTG‑AGGAAAATTACCGGGTTTACGATTAAGAAAATGATGAGGGCGAGTTTGTAc                                                                           >  2:683950/1‑143 (MQ=255)                                                       cGGGGAGCAGCGGGTAGCATTTCAGGGCCATCGCCAGAGTGAAAATAAATTCCGCTACCAGCAACCAGCCCGCGACGAAAGGGCTGATG‑AGGAAAATTAACGGGTTTACGATTAAGAAAATGATGAGGGCGAGTTTGTACCAg                                                                        >  1:114428/1‑143 (MQ=255)                                                          ggAGCAGCGGGTAGCACGTCAGGGCAAACGCCAAATTGACCCCGGCGGCCGCCACCAGCAACCAGCCCGCGACGAAAGGGCTGATG‑AGGAAAATTAACGGGTTTACGATTAAGAAAATGATGAGGGCGAGTTTGTACCAGTCg                                                                     <  1:657311/143‑1 (MQ=255)                                                                    gcaGCATTGCGGGGCGAGCGCCAGAGGGAAACTGAAGTCCGCTACCAGCAACCAGCCCGCGACGAAAGGGATGATG‑AGGAAAATTAACGGGTTTACGATTAAGAAAATGATGAGGGCGAGTTTGTACCAGTCGGGGGACTGGc                                                           <  2:696289/141‑1 (MQ=255)                                                                    gTAGCAGTTCAGGCCCATCGCGATAGCTAAGAGAAATTCCGCTACCAGCAACCAGCCCGCGACGAAAGGGCTGATG‑AGGAAAATTAACGGGTTTACGATTAAGAAAATGATGAGGGCGAGTTTGTACCAGTCGGGGGACTGGc                                                           <  2:6259/143‑1 (MQ=255)                                                                         aTTTCAGGGCCATCGCCAGAGTGAAAATAAATTCCGCTACCAGCAACCAGCCCGCGACGAAAGGGCTGATG‑AGGAAAATTAACGGGTTTACGATTAAGAAAATGATGAGGGCGAGTCTGTACCAGTCGGGGGACTGGCCCaaa                                                      >  1:473005/1‑143 (MQ=255)                                                                         aTTTCAGGGCCATCGCCAGAGTGAAAATAAATTCCGCTACCAGCAACCAGCCCGCGACGAAAGGGCTGATG‑AGGAAAATTAACGGGTTTACGATTAAGAAAATGATGAGGATGAGTTGGTGCCAGTCGGGGGACTGGCCCaaa                                                      >  1:34396/1‑143 (MQ=255)                                                                          tttCAGGGCCATCGCCAGAGTGAAAATAAATTCCGCTACCAGCAACCAGCCCCCGACGAAAGGGCTGATA‑AGGAAAATTAACGGGTTTACGATTAAGAAAATGATGAGGGCGAGTTTGTACCAGTCGGGGGACTCGCCCaaaa                                                     >  2:880046/1‑143 (MQ=255)                                                                          gttCAGGGCCAATGCCAGAGGTAAAATAAAGTCCGCTACCAGCAACCAGCCCGCGACGAAAGGGCTGATG‑AGGAAAATTAACGGGTTTACGATTAAGAAAATGATGAGGGCGAGTTTGTACCAGTCGGGGGACTGGCCCaaaa                                                     <  2:949595/142‑1 (MQ=255)                                                                              aGGGCCATCGCCAGAGTGAAAATAAATTCCGCTACCAGCAACCAGCCCGCGACGAAAGGGCTGATG‑AGGAAAATTAACGGGTTTGCGATTAAGAAAATGATGAGGGCGAGTTTGTACCAGTCGGGGGACTGGCCCAAAAAAtt                                                 >  2:339369/1‑143 (MQ=255)                                                                              aGGGCCATCGCCAGAGTGAAAATAAATTCCGCTACCAGCAACCAGCCCGCGACGAAAGGGCTGATG‑AGGAAAATTAACGGGTTTACGATTAAGAAAATGATGAGGGCGAGTTTGTACCAGTCGGGGGACTGGCCCcacaaact                                                 >  2:700004/1‑141 (MQ=255)                                                                               gggCCATCGCCAGAGTGAAAATAAATTCCGCTACCAGCAACCAGCCCGCGACGAAAGGGCTGATG‑AGGAAAATTAACGGGTTTACGATTAAGAAAATGATGAGGGCGAGTTTGTACCAGTCGGGGGACTGGCCAAAACAATTg                                                >  2:924132/1‑143 (MQ=255)                                                                               gggCCATCGCCAGAGTGAAAAAAACTTCCGCTACCAGCAACCAGCCCGCGACGAAAGGGCTGATG‑AGGAAAATTAACGGGCTTACGATTAAGAAAATGATGAGGGCGAGTCTGTACCAGTCGGGGGACTGGCCTAACAAATTg                                                >  2:922697/1‑143 (MQ=255)                                                                                ggCCATGGCCAGAGTGAAAATAAATCCCGCTACCATCAACCGGCCCGCGACGAAAGGGCTGATG‑AGGAAAATGAACGGGTTTACGATTAAGAAAATGATGAGGGCGAGTGTGTACCAGTCGGGGGACTGGCCCAAAAAATTgc                                               <  1:207856/143‑1 (MQ=255)                                                                                ggCCATCGCCAGAGTGAAAATAAATTCCGCTACCAGCAACCAGCCCGCGACGAAAGGGCTGATG‑AGGAAAATTAACGGGTTTACGATTAAGAAAATGATGAGGGCGAGTTTGTACCAGTCGGGGGACTGGCCCAAAAAATTgc                                               <  1:136171/143‑1 (MQ=255)                                                                                  ccATCGCTAGAGTGAAAATAAATTCCGCTACCAGCAACCAGCCCGCGACGAAAGGGCTGATG‑AGGAAAATTAACGGGTTTACGATTAAGAAAATGATGAGGGCGAGTTTGTACCAGTCGGGGGACTGGCCCAAAAAATTgcgc                                             <  1:566803/143‑1 (MQ=255)                                                                                  ccATCGCCAGAGTGAAAATAAATTCCGCTACCAGCAACCAGCCCGCGACGAAAGGGCTGATG‑AGGAAAATTAACGGGTTTACGATTAAGAAAATGATGAGGGCGAGTTTGTACCAGTCGGGGGACTGGCCCAAAAAATTgcgc                                             >  2:365833/1‑143 (MQ=255)                                                                                         cggagTGAAAAGAAGTTCCGCTACCAGCAACCAGCCCGCGACGAAAGGGCTGATG‑AGGAAAATTAACGGGTTTACGATTAAGAAAATGATGAGGGCGAGTTTGTACCAGTCGGGGGACTGGCCCAAAAAATTGCGCCATAgcg                                      <  2:283892/141‑1 (MQ=255)                                                                                         cAGAGTGAAAATAAATTCCGCTACCAGCAACCAGCCCGCGACGAAAGGGCTGATG‑AGGAAAATTAACGGGTTTACGATTAAGAAAATGATGAGGGCGAGGGTGTACCAGTCGGGGGACTGGCCCAAAAAATAGAGCCATAgcg                                      >  2:943501/1‑143 (MQ=255)                                                                                         cAGAGTGAAAATAAATTCCGCTACCAGCAACCAGCCCGCGACGAAAGAGCTGATG‑AGGAAAATTAACGGGTTTACGATTAAGAAAATGATGAGAGAGAGGTTGTCGCAGTCGGTGGCCTGGCCCCAAAAATTACGCCGTcgcg                                      >  2:687418/1‑143 (MQ=255)                                                                                          agagTGACAATAAAGTCCGCGACCAGCAACCAGCCCGCGACGAAGGGGCTGATC‑ACGAGTATTAACGGGTTTACGATTAAGAAAATGATGAGGGCGAGTTTGTACCAGTCGGGGGACTGTCCCAAAAAATTGCGCCATAgcgc                                     <  2:368148/143‑1 (MQ=255)                                                                                           gagTGAAAATAAAGTCCGCTACCACGAACCAGCCCGTGACGAAAGGGCTGATG‑AGGAAAATTAACGGGATTACGACTAAGAAAATGATGAGGGCGATTTTGTACCAGTCGGGGGACTGGCCCAAACAATTGCGCCATAgcgcg                                    <  2:79002/143‑1 (MQ=255)                                                                                             gTGAAAATAAATTCCGCTACCAGCAACCAGCCCGCGACGAAAGGGCTGATG‑AGGAGAATTAACGGGTTGACGATTAAGAAAATGATGAGGGCGAGTTTGTACCAGTCGGGGGACTGGCCCAAAAAATTGCGCCGTGGcgcgcg                                  >  1:605641/1‑143 (MQ=255)                                                                                             gTGAAAAGAAATGCCGCTACCAGCAACCAGCCCGCGACGAAAGGGCTGATG‑AGGAAAATTAACGGGTTTACGATTAAGAAAATGATGAGGGCGAGTTTGTACCAGTCGGGGGACTGGCCCAAAAAATTGCGCCATAGcgcgcg                                  <  1:778513/143‑1 (MQ=255)                                                                                                  aataaatTCCGCTACCAGCAACCAGCCCGCGACGAAAAAGAAAGTGCAAGAAAA‑TAACGGGTTTACGATTAAGCAAATGCAGTGGGCGAGATTGTAAGATTTAGGCGATTGGCCCAAAAAATTGCGCCATAGCGCGCGGcccc                             >  1:937981/1‑143 (MQ=255)                                                                                                       atTCCGCTACCAGCAACCAGCCCGCGACGAAAGGGCTGATG‑AGGAAAATTAACGGGTTTACGATTAAGAAAATGATGAGGGCGAGTTTGTACCAGTCGGGGGACTGGCCCAAAAAATTGCGCCATAGCGCGCGGCCCCAGgag                        >  2:532915/1‑143 (MQ=255)                                                                                                         cacGCTACAACCACTCAGCCCCCGACTGAAGTGCTGTTG‑AGGAAAATTAACGGGTTTACGATTAAGACTCTGATGAGGGCGAGTTTGTACCAGTCGGGGGACTGGCCCAAAAAATTGCGCCATAGCGCGCGGCCCCAGGAGAt                      <  2:296837/141‑1 (MQ=255)                                                                                                          ccGCTACCAGCAACCAGCCCGCGACGAAAGGGCTGATG‑AGGAAAATTAACGGGTTTACGATTAAGAAAATGATGAGGGCGAGTTTGTACCAGTCGGGGGACTGGCCCAAAAAATTGCGCCATAGCGCGCGGCCCCAGGAGAtc                     <  2:182933/143‑1 (MQ=255)                                                                                                          ccGCTACCAGCAACCAGCCCGCGACGAAAGGGCTGATG‑AGGAAAATTAACGGGTTTACGATTAAGAAAATGATGAGGGCGAGATTGTACCAGTCGGGGGACTGGCCCAAAAAATTGAGCCATAGCGCGCGGCCCCCGGAGAtc                     >  2:780981/1‑143 (MQ=255)                                                                                                           cgcgACCAGCAAGCAGCCCGCGACGAAAGGGCTGAGG‑AGGAAAATTAACGGGTTTACGATTAAGAAAATGATGAGGGCGAGTTTGTACCAGTCGGGGGACTGGCCCAAAAAATTGCGCCATAGCGCGTGGCCCCAGGAGAtct                    <  2:767329/143‑1 (MQ=255)                                                                                                           cgatatcAGAAACCGGCCCGCGACGAAAGGGCTGATG‑AGGAAAATTAACGGGTTTACGATTAAGAAAATGATGAGGGCGAGTTTGTACCAGTCGGGGGACTGGCCCTAAAAATTGCGCCATAGCGCGCGGCCCCAGGAGAtct                    <  1:679400/137‑1 (MQ=255)                                                                                                            gCTACCAGCAACCAGCCCGCGACGAAAGGGCTGATG‑AGGAAAATTAACGGGCTTACGATTAAGAAAATGATGAGGGCGAGTCTGTACCAGTCGGGGGACTGGCCAAAAAAATTGCGCCATAGCCCCCGGCCCCAGGCGCtctc                   >  2:1033195/1‑143 (MQ=255)                                                                                                               aCCAGCAACCCGCCCGAGGCGAAAGGGCTGAGG‑ATGAAAATTAACTGCTTTACGATTAAGAAAATGATGAGGGCGAGTTTGTACCAGTCGGGGGACTGGCCCAAAAAATTGCGCCATAGCGCGCGGCCCCAGGAGATCTCCat                <  1:811550/143‑1 (MQ=255)                                                                                                                 cAGCAACCAGCCCGCGACGAAAgggctggttgctggtagcggaatttattttcactctggcgatggccctgaaat                                                                                   <  2:715272‑M2/75‑54 (MQ=255)                                                                                                                 cAGCAACCAGCCCGCGACGAAAgggctggttgctggtagcggaatttattttcactctggcgatggccctgaaat                                                                                   >  1:715272‑M2/1‑22 (MQ=255)                                                                                                                 cAGCAACCAGCCCGCGACGAAAGGGCTGATG‑AGGAAAATTAACGGGTTTACGATTAAGAAAATGATGAGGGCGAGTTTGTACCAGTCGGGGGACTGGCCCAAAAAATTGCGCCATAGCGCGCGGCCCCAGGAGATCTCCatga              >  1:782763/1‑143 (MQ=255)                                                                                                                 cAGCAACCAGCCCGCGACGAAAGGGCTGATG‑AGGAAAATTAACGGGTTTACGATTAAGAAAATGATGAGGGCGAGTTTGTACCAGTCGGGGGACTGGCCCAAAAAATTGCGCCATAGCGCGCGGCCCCAGGAGATCTCCatga              >  1:126277/1‑143 (MQ=255)                                                                                                                  aGCAACCAGCCCGCGACGAAAGGGCTGATG‑AGGAAAATTAACGGGTTTACGATTAAGAAAATGATGAGGGCGAGTTTGTACCAGTCGGGGGACTGGCCCAAAAAATTGCGCCATAGCGCGCGGCCCCAGGAGATCTCCatgat             >  2:376737/1‑143 (MQ=255)                                                                                                                      aCCAGCCCGCGACGAAAgggctggttgctggtagcggaatttattttcactctggcgatggccctgaaatgctacccgctgctccccggtggtctgttggctatcgaagcggtattcatcggcatgaccagcgcggaacacgt          <  1:995363‑M2/143‑127 (MQ=255)                                                                                                                             cgcgACGAAAGGGCTGATG‑AGGAAAATTAACGGGTTTACGATTAAGAAAATGATGAGGGCGAGTTTGTACCAGTCGGGGGACTGGCCCAAAAAATTGCGCCATAGCGCGCGGCCCCAGGAGGTCTCCATGATGGTTTCcctta  >  1:1021545/1‑143 (MQ=255)                                                                                                                                      |                                                                                                                                       CGTGTTCCGCGCTGGTCATGCCGATGAATACCGCTTCGATAGCCAACAGACCACCGGGGAGCAGCGGGTAGCATTTCAGGGCCATCGCCAGAGTGAAAATAAATTCCGCTACCAGCAACCAGCCCGCGACGAAAGGGCTGATG‑AGGAAAATTAACGGGTTTACGATTAAGAAAATGATGAGGGCGAGTTTGTACCAGTCGGGGGACTGGCCCAAAAAATTGCGCCATAGCGCGCGGCCCCAGGAGATCTCCATGATGGTTTCCCTTA  >  NC_000913/1234465‑1234731

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.