New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 2154600	36 (0.670)	3 (0.060)	3/246	NT	7.2%	coding (585/1248 nt)	mdtA	multidrug efflux pump membrane fusion protein MdtA
	?	NC_000913	= 2154615	44 (0.870)					coding (600/1248 nt)	mdtA	multidrug efflux pump membrane fusion protein MdtA

ACTGGCAAAAACCAATCTCGTTTCCCGCCAGGAGCTGGATGCCCAACAGGCGCTGGTCAGTGAAACCGAAGGCACCATTAAGGCTGATGAAGCAAGCGTTGCCAGCGCGCAGCTGCAACTCGACTGGAGCCGGATTACCGCACCAGTCGATGGTCGCGTTGGTCTCAAGCAGGTTGATGTTGGTAACCAAATCTCCAGTGGTGATACCACCGGGATCGTGGTGATCACCCAGACGCATCCTATCGATTTAGTCTTTACCCTGCCGGAAAGCGATATCGCTACCG  >  NC_000913/2154474‑2154757                                                                                                                                              |                                                                                                                                               aCTGGCAAAAACCAATCCCGTTTCCCGCCAGGAGCTGGATGCCCAACAGGCGCTGGTCAGTGAAACCGAAGGCACCATTAAGGCTGATGAAGCAAGCGTTGCCAGCGCGCAGCTGCAACTCGACTGGAGCCGGATTACCGCAc                                                                                                                                               >  1:303208‑M2/1‑142 (MQ=255)     gCAAAAACCAATCTCGTTTCCCGCCAGGAGCTGGATGCCCAACAGGCGCTGGTCAGTGAAACCGAAGGCACCATTAAGGCTGATGAAGCAAGCGTTGCCAGCGCGCAGCTGCAACTCGACTGGAGCCGGATTACCGCAccagt                                                                                                                                           <  1:54880‑M2/143‑6 (MQ=255)     gCAAAAACCAATCTCGTTTCCCGCCAGGAGCTGGATGCCCAACAGGCGCTGGTCAGTGAAACCGAAGGCACCATTAAGGCTGATGAAGCAAGCGTTGCCAGCGCGCAGCTGCAACTCGACTGGAGCCGGATCAACGCAccagt                                                                                                                                           <  2:323432‑M2/143‑6 (MQ=255)      cAAAAACCAATCTCGTTTCCCGCCAGGAGCTGGATGCCCAACAGGCGCTGGTCAGTGAAACCGAAGGCACCATTAAGGCTGATGAAGCAAGCGTTGCCAGCGCGCAGCTGCAACTCGACTGGAGCCGGATTACCGCAccagtc                                                                                                                                          >  2:703972‑M2/1‑137 (MQ=255)              aaTCTCGTTTCCCGCCAGGAGCTGGATGCCCAACAGGCGCTGGTCAGTGAAACCGAAGGCACCATTAAGGCTGATGAAGCAAGCGTTGCCAGCGCGCAGCTGCAACTCGACTGGAGTCGGATTACCGCACCAGTCGATGGTcg                                                                                                                                  >  1:437787/1‑143 (MQ=255)                  tcGTTTCCCGCCAGGAGCTGGATGCCCAACAGGCGCTGGTCAGTGAAACCGAAGGCACCATTAAGGCCGATGAAGCAAGCGTTGCCAGCGCGCAGCTGCAACTCGACTGGAGCCGGATTACCGCACCAGTCGATGGTCGCGtt                                                                                                                              >  2:678923/1‑143 (MQ=255)                     cttCCCCCCAGGAGCCGGATGCCCAACAGGTGGTGGCCAACCAAACCGAAGGCACCATTAATGCTGATGAAGCAAGCGTTGCCAGCGCGCAGCTGCGACTCGACTGTAGCCGGATTACCGCACCAGTCGATGGTCGCGTTGGt                                                                                                                           <  2:217525/142‑1 (MQ=255)                      ttCCCGCCAGGAGCTGGATGCCCAACAGGCGCTGGTCAGTGAAACCGAAGGCACCATTAAGGCTGATGAAGCAAGCGTTGCCAGCGCGCAGCTGCAACTCGACTGGTGCGGGGTTACCGCACCAGTCGCTGGTCGCGTTGGtc                                                                                                                          >  1:192475/1‑143 (MQ=255)                           gCCAGGAGCTGGATGCCCAACAGGCGCGGGTCAGTGAAACCGAAGGCACCATTAAGGCTGATGAAGCAAGCGTTGCCAGCGCGCAGCTGCAACTCGACTGGAGCCGGATTACCGCACCAGTCGATGGTCGCGTTGGTCTCAAg                                                                                                                     <  1:248484/143‑1 (MQ=255)                                 aGCTCGATGCCCAACAGGCGCTGGTCACTGAAACCGAAGCCACCATTAAGGCTCAGGAAGCAAGCGTTGCCAGCGCGCAGCTGCAACTCGACTGGAGCCGGATTACCGCACCAGTCGATGGTCGCGTTGGTCTCAAGCAGGtt                                                                                                               <  2:796704/143‑1 (MQ=255)                                        tGCCCAACAGGCGCTGGTCAGTGAAACCGAAGGCACCATTAAGGCTGATGAAGCAAGCGTTGCCAGCGCGCAGCTGCAACTCGACTGGAGCCGGATTACCGCACCAGTCGATGGTCGCGTTGGTCTCAAGCAGGTTGATGTTg                                                                                                        <  2:224397/143‑1 (MQ=255)                                        tGCCCAACAGGCGCTGGTCAGTGAAACCGAAGGCACCATTAAGGCTGAGGAAGCAAGCGTTGCCAGCGCGCAGCTGCAACTCGACTGGAGCCGGATTACCGCACCAGTCGATGGTCGCGTTGGTCTCAAGCAGGTTGATGTTg                                                                                                        <  1:970758/143‑1 (MQ=255)                                          gtcgaCAGGCGCTGGGCAGTGAGACCGAAGGCACCAGTAAGGCTGAGGAAGCAAGCGTTGCCAGCGCGCAGCTGCAACTCGACTGGAGCCGGATTACCGCGCCAGTCGATGGTCGCGTTGGTCTCAATCAGGTTGATGTTGGt                                                                                                      <  2:887733/139‑1 (MQ=255)                                           ccAACAGGCGCTGGTCAGTGAAACCGAAGGCACCATTAAGGCTGATGAAGCAAGCGTTGCCAGCGCGCAGCTGCAACTCGACTGGAGCCGGATTACCGCACCAGTCGATGGTCGCGTTGGTCTCAAGCAGGTTGATGTTGGTa                                                                                                     >  2:105226/1‑143 (MQ=255)                                              aCAGGCGCTGGTCAGTGAAACCGAAGGCACCATTAAGGCTGAGGAAGCAAGCGTTGCCAGCGCGCAGCTGCAACTCGACTGGAGGCGGATTACCGCACCAGTCGACGGTCGCGCTGGTCTCAAGCAGGTTGATGTTgggcacc                                                                                                  >  2:599767/1‑138 (MQ=255)                                                 ggCGCTGGTCCGTGAGACCGAAGGCACCATTAGGGCTGATGAAGCAAGCGTTGCCAGCGCGCAGCTGCAACTCGACTGGAGCCGGATTACCGCACCAGTCGATGGTCGCGTTGGTCTCAAGCAGGTTGATGTTGGTAACCaaa                                                                                               <  2:475463/143‑1 (MQ=255)                                                  gggcTGGCCAGTGAAACCGAAGGCACCATCAGGGCTGATGAAGCAAGCGTTGCCAGCGCGCAGCTGCAACTCGACTGGAGCCGGATTACCGCACCAGTCGATGGTCGCGTTGGTCTCAAGCAGGTTGATGTTGGTAACCAAAt                                                                                              <  1:261345/141‑1 (MQ=255)                                                             tGAAACCGAAGGCACCATTAAGGCTGATGAAGCAAGCGTTGCCAGCGCGCAGCTGCAACTCGACGGGGGCCGGATTACCGCACCAGTCGATGGTCGCGTGGGTCTCAAGCAGGTTGATGATGGTAACAGAATCTCCAgtcgtg                                                                                   >  2:1053674/1‑143 (MQ=255)                                                                 aCCGAAGGCACCATTAAGGCTGATGAAGCAAGCGTTGCCAGCGCGCAGCTGCAACTCGACTGGAGCCGGATTACCGCACCAGTCGATGGTCGCGTTGGTCTCAAGCAGGTTGATGTTGGTAACCAAATCTCCAGTGGTGATac                                                                               >  2:722799/1‑143 (MQ=255)                                                                 aCCGAAGGCACCATTAAGGCTGATGAAGCAAGCGTTGCCAGCGCGCAGCTGCAACTCGACTGGAGCCGGATTACCGCACCAGTCGATGGTCGCGTTGGTCTCAAGCAGGTTGATGTTGGTAACCAAATCTCCAGTGGTGATac                                                                               >  1:270799/1‑143 (MQ=255)                                                                  ccGAAGGCACCATTAAGGCTGATGAAGCAAGCGTTGCCAGCGCGCAGCTGCAACTCGACTGGAGCCGGATTACCGCACCAGTCGATGGTCGCGTTGGTCTCAAGCAGGTTGATGCTGGTAACCAAACCTCCAGTGGCGCTacc                                                                              >  2:862126/1‑143 (MQ=255)                                                                        gCACCATTAAGGCTGATGAAGCAAGCGTTGCCAGCGCGCAGCTGCAACTCGACTGGAGCCGGATTACCGCACCAGTCGATGGTCGCGTTGGTCTCAAGCAGGTTGATGTTGGTAACCAAATCTCCAGTGGTGATACCACCggg                                                                        >  1:985058/1‑143 (MQ=255)                                                                           ccATTAAGGCTGATGAAGCAAGCGTTGCCAGCGCGCAGCTGCAACTCGACTGGAGCCGGATTACCGCACCAGTCGATGGTCGCGTTGGTCTCAAGCAGGTTGATGTTGGTAACCAAATCTCCAGTGGTGATACCACCGGGATc                                                                     <  1:1023502/143‑1 (MQ=255)                                                                            cATTAAGGCTGATGAAGCAAGCGTTACCAGCGCGCAGCTGCAACTCGACTGGAGCCGGATTACCGCACCAGTCGATGGTCGCGTTGGTCTCAAGCAGGTTGATGTTGGTAACCAAATCTCCAGTGGTGATACCACCGGGATCg                                                                    <  1:104955/143‑1 (MQ=255)                                                                             aTTAAGGCTGATGAAGCAAGCGTTGCCAGCGCGCAGCTGCAACTCGACTGGAGCCGGATTACCGCACCAGTCGATGGTCGCGTTGGTCTCAAGCAGCCAGCTGGTTGTAACCCCATCTCCAGTGGTGGTACCACCGGGATCgt                                                                   >  1:763199/1‑143 (MQ=255)                                                                                  ggCTGATGAAGCAAGCGTTGCCAGCGCGCAGCTGCAACTCGACTGGAGCCGGATTACCGCACCAGTCGATGGTCGCGTTGGTCTCAAGCAGGTTGATGTTGGTAACCAAATCTCCAGTGGTGATACCACCGGGATCGTGGTGa                                                              <  1:677685/143‑1 (MQ=255)                                                                                  ggCTGATGAAGCAAGCGTTGCCAGCGCGCAGCTGCAACTCGACTGGAGCCGGATTACCGCACCAGTCGATGGTCGCGTTGGTCTCAAGCAGGTTGATGTTGGTAACCAAATCTCCAGTGGTGATACCACCGGGATCGTGGTGa                                                              >  1:716086/1‑143 (MQ=255)                                                                                        tgaAGCAAGCGTTGCCAGCGCGCAGCTGCAACTCGACTGGAGCCGGATTACCGCACCAGTCGATGGTCGCGGTGGTCTCAAGCAGGTTGATGTTGGTAACCAAATCTCCAGTGGTGATACCACCGGGCTCGTGGTGATCAccc                                                        >  1:305687/1‑143 (MQ=255)                                                                                         caagcaagcGTCGCCAGCGCGCAGCTGCAACTCGACTGGACCCGGATTACCGCACCAGTCGATGGTCGCGTTGGTCTCAAGCAGGTTGATGTTGGTAACCAAATCTCCAGTGGTGATACCACCGGGATCGTGGTGATCACCCa                                                       <  2:258517/142‑1 (MQ=255)                                                                                            gcaagcGTTGCCAGCGCGCAGCTGCAACTCGACTGGAGCCGGATTACCGCACCAGTCGATGGTCGCGTTGGTCTCAAGCAGGTTGATGTTGGTAACCAAATCTCCAGTGGTGATACCCCCGGGATCGTGGTGACCACCCCGAc                                                    >  1:296508/1‑143 (MQ=255)                                                                                                      ccAGCGCGCAGCTGCAACTCGACTGGACCCGGATTACCGCACCAGTCGATGGTCGCGTTGGTCTCAAGCAGGTTGATGTTGGTAACCAAATCTCCAGTGGTGATACCACCGGGATCGTGGTGATCACCCAGACGCATCCTATc                                          <  1:41556/143‑1 (MQ=255)                                                                                                           gcgcAGCTGCAACTCGACTGGAGCCGGATTACCGCACCAGTCGATGGTCGCGTTGGTCTCAAGCAGGTTGATGTTGGTAACCAAATCTCCAGTGGTGATACCACCGGGATCCTGGTGATCACCCAGACGCATCCTCTCgctct                                     >  1:927038/1‑139 (MQ=255)                                                                                                                   gCAACTCGACTGGAGCCGGATTACCGCACCAGTCGATGGTCGCGTTGGTCTCAAGCAGGTTGATGTTGGTAACCAAATCTCCAGTGGTGATACCACCGGGATCGTGGTGATCACCCAGACGCATCCTATCGATTTAGTCTTTa                             >  1:728159/1‑143 (MQ=255)                                                                                                                     aaCTCGACTGGAGCCGGATTACCGCAccagtcgagttgcagctgcgcgctggcaacgcttgcttcatcagccttaatggtgccttcggtttcactgaccagcgcctgttgggcatccagctcctggcgggaaacgagattcgc                           <  2:385582‑M2/143‑118 (MQ=255)                                                                                                                     aaCTCGACGGGAGCCGGATGACCGCACCAGGCGGTGGTCGCGTTGGTCTCAAGCAGGTTGATGTTGGTAACCAAATCTCCAGTGGTGATACCACCGGGATCGTGGTGATCACCCAGACGCATCCTATCGATTTAGTCTTTAcc                           <  2:141399/143‑1 (MQ=255)                                                                                                                        tCGACTGGAGCCGGATTACCGCAccagtcgagttgcagctgcgcgctggcaacgcttgcttcatcagccttaatggtgccttcggtttcact                                                                           >  1:664806‑M2/1‑23 (MQ=255)                                                                                                                        tCGACTGGAGCCGGATTACCGCAccagtcgagttgcagctgcgcgctggcaacgcttgcttcatcagccttaatggtgccttcggtttcact                                                                           <  2:664806‑M2/92‑70 (MQ=255)                                                                                                                         cGACTGGTGCGCGAGTACGGCACCAGCCGACGCTCGCGTTGGTCTCAAGCAGGTTGAGGTTGGTAACCAAATCTCCAGTGGTGATACCACCGGGATCGTGGTGATCACCCAGACGCATCCTATCGATTTAGTCTTTACCCTGc                       <  2:719545/143‑1 (MQ=255)                                                                                                                          gACTGGCGCTGGAGTACCGCACCAGTCGATGGTCGCGTTGGTCTCAAGCAGGTTGATGTTGGTAACCAAACCTCCAGTGGTGATACCACCGGGATCGTGGTGATCACCCAGACGCATCCTATCGATTTAGTCTTTACCGTGcc                      >  2:429911/1‑143 (MQ=255)                                                                                                                           aCTGGGGCCGGATTACCGCACCAGTCGATGGTCGCGTTGGTCTCAAGCAGGTTGATGTTGGTAACCAAATCTCCAGTGGTGATACCACCGGGATCGTGGTGATCACCCAGACGCATCCTATCGATTTAGTCTTTACCCTGCCg                     <  2:896868/143‑1 (MQ=255)                                                                                                                             tGGAGCCGGATTACCGCACCAGTCGATGGTCGCGTTGGTCTCAAGCAGGTTGATGTTGGTAACCAAATCTCCAGTGGTGATACCACCGGGATCGTGGTGATCACCCAGACGCATCCTATCGAATTAGGCTTTACCCTGCCGGa                   >  2:658697/1‑143 (MQ=255)                                                                                                                               gAGCCGGATTACCGCACCAGTCGATGGTCGCGTTGGTCTCAAGCAGGTTGATGTTGGTAACCAAATCTCCAGTGGTGATACCACCGGGATCGTGGTGATCACCCAGACGCATCCTATCGATTTAGTCTTTACCCTGCCGGaaa                 <  1:916614/143‑1 (MQ=255)                                                                                                                                aGCCGGATTACCGCACCAGTCGATGGTCGCGTTGGTCTCAAGCAGGTTGATGTTGGTAACCAAATCTCCAGTGGTGATACCACCGGGATCGTGGTGATCACCCAGACGCATCCTATCGATTTAGTCTTTACCCTGCCGGAAAg                <  1:105226/143‑1 (MQ=255)                                                                                                                                  ctggATTACCGCACCAGTCGATGGTCGCGTCGGTCTCAAGCAGGTTGATGTTGGTAACCAAATCTCCAGTGGTGATACCACCGGGATCGTGGTGATCACCCAGACGCATCCTATCGATTTAGTCTTTACCCTGCCGGAAAGCg              <  2:810737/141‑1 (MQ=255)                                                                                                                                  ccGGATTACCGCACCAGTCGATGGTCGCGTTGGTCTCAAGCAGGTTGATGTTGGTAACCAAATCTCCAGTGGTGATACCACCGGGATCGTGGTGATCACCCAGACGCATCCTATCGACTTAGTCTTTACCCTCCCGGAAAGCg              >  2:415084/1‑143 (MQ=255)                                                                                                                                   ccgagtACCGCACCAGTCGATGGTCGCGTTGGTCTCAAGCAGGTTGATGTTGGTAACCAAATCTCCCGTGGTGATACCACCGGGATCGTGGTGATCACCCAGACGCATCCTATCGATTTAGTCTTTACCCTGCCGGAAAGCGa             <  1:147681/138‑1 (MQ=255)                                                                                                                                    ggATTACCGCACCAGTCGATAGTCGCTGAGGTCTCAAGCAGGTTGATGTTGGTAACCAAATCTCCAGTGGTGATACCACCGGGATCGTGGTGATCACCCAGACGCATCCTATCGATTTAGTCTTTACCCTGCAGGAAAGCGat            >  2:922306/1‑143 (MQ=255)                                                                                                                                     gATTACCGCACCAGTCGATGGTCGCGTTGGTCTCAAGCAGGTTGATCTTGGTAACCAAATCTCCAGTGGTGCTACCACCGGGATCGTGGTGATCACCCAGACGCAGACTATCGAGTCAGTCTTTACAGTGCCGCACAGAGata           >  2:178398/1‑143 (MQ=255)                                                                                                                                       ttACCGCTCCACTCGATGGTCGCGTTGGTCTCAAGCATGTTGATGTTGGTAACCACATCTCCAGTGGTGATACCACCGGGATCGTGGTGATCACCCAGACGCATCCTATCGATTTAGTCTTGACCCTGCCGGAAAGCGATATc         <  2:922470/143‑1 (MQ=255)                                                                                                                                        tACCGCACCAGTCGATGGTCGCGTTGGTCTCAAGCAGGTTGATGTTGGTAACCAAATCTCCAGTGGTGATACCACCGGGATCGTGGTGATCACCCAGACGCATCCTATCGATTTAGTCTTTACCCTGCCGGAAAGCGATATCg        <  1:463020/143‑1 (MQ=255)                                                                                                                                        tACAGCACCAGTCGATGGTCGCGTTGGTCTCAAGCAGGTTGATGTTGGTAACCAAATCTCCAGTGGTGATACCACCGGGATAGAGGTGATCACCCAGACGCATCCTATCGATTTAGTCTTTACCCTGCCGGAAAGCGATATCg        <  1:40582/143‑1 (MQ=255)                                                                                                                                           cGCACCAGTCGATGGTCGCGTTGGTCTCAAGCAGGTTGATGTTGGTAACCAAATCTCCAGTGGTGATACCACCGGGATCGTGGTGATCACCCAGACGCATCCTATCGATTTAGTCTTTACCCTGCCGGAAAGCGATATCGCTa     >  1:106450/1‑143 (MQ=255)                                                                                                                                           cGCACCAGTCGATGGTCGCGTTGGTCTCAAGCAGGTTGATGTTGGTAACCAAATCTCCAGTGGTGATACCACCGGGATCGTGGTGATCACCCAGACGCATCCTATCGATTTAGTCTTTACCCTGCCGGAAAGCGATATCGCTa     <  1:1012602/143‑1 (MQ=255)                                                                                                                                           cGCACCAGTCGATGGTCGCGTTGGTCTCAAGCAGGTTGATGTTCGTAACCAAATCTCCAGTGGTGATACCACCGGGCTCGTGGTGACAACCCAGACGCATCCTATCGATCTAGTCTGTACCCTGCCCGAAACCGAAACCGCTa     >  2:80591/1‑143 (MQ=255)                                                                                                                                            gCACCAGTCGATGGTCGCGTTGGTCTCAAGCAGGTTGATGTTGGTAACCAAATCTCCAGTGGTGATACCACCGGGATCGTGGTGATCACCCAGACGCATCCTATCGATTTAGTCTTTACCCTGCCGGAAAGCGATATCGCCAc    >  1:494355/1‑143 (MQ=255)                                                                                                                                             cACCAGTCGATGGTCGCGTTGGTCTCAAGCAGGTTGATGTTGGTAACCAAATCTCCAGTGGTGATACCACCGGGATCGTGGTGATCACCCAGACGCATCCTATCGATTTAGTCTTTACCCTGCCGGAAAGCGATATCGCTAcc   <  1:1017441/143‑1 (MQ=255)                                                                                                                                              aCCAGTCGATGGTCGCGTTGGTCTCAAGCAGGTTGATGTTGGTAACCAAATCTCCAGTGGTGATACCACCGGGATCGTGGTGATCACCCAGACGCATCCTATCGATTTAGTCTTTACCCTGCCGGAAAGCGATATCGCTACCg  >  1:1036725/1‑143 (MQ=255)                                                                                                                                              |                                                                                                                                               ACTGGCAAAAACCAATCTCGTTTCCCGCCAGGAGCTGGATGCCCAACAGGCGCTGGTCAGTGAAACCGAAGGCACCATTAAGGCTGATGAAGCAAGCGTTGCCAGCGCGCAGCTGCAACTCGACTGGAGCCGGATTACCGCACCAGTCGATGGTCGCGTTGGTCTCAAGCAGGTTGATGTTGGTAACCAAATCTCCAGTGGTGATACCACCGGGATCGTGGTGATCACCCAGACGCATCCTATCGATTTAGTCTTTACCCTGCCGGAAAGCGATATCGCTACCG  >  NC_000913/2154474‑2154757

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.