New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 2443842NA (NA)3 (0.060) 3/248 NT NA noncoding (28/37 nt) other REP171b
?NC_000913 = 2443861 NA (NA)noncoding (9/37 nt) other REP171b

CGGTTATGGGTGCGGAAATTGTTGAAGGGTAAAGCGGTTAAGGCGGGGTAATCTGCTCTCGCAGTGTTTGCCGGATGCGGCGTGAACGCCTTATCCGACCTACGTGTGACGTGTAGGCCTGATAAGACGCGATAAGCGTCGCATCAGGCATGCTGCTCCAGACGCCGCAACTTACTGCTGTGACGCCTGCTGAAACAGGTTTTCCCACATATCGGTCACCAGCGCCTGGTCACGCGGCGACAATTCACCAGCACCAATGGCTTTTTCCAGACTCTGGCTAACGG  >  NC_000913/2443720‑2444003
                                                                                                                                             |                                                                                                                                              
cGGTCATGGGTGCGGAAATGGTTGAAGGGTAAAGCGGTTAAGGCGGGGTAATCTGCTCTCGCAGTGTTTGCCGGATGCGGCGTGAACGCCTTATCCGACCTACGTGTGACGTGTAGGCCTGATAAGACGCGATAAGCGTCGCa                                                                                                                                               >  1:13642‑M2/1‑142 (MQ=255)
    tgtgggtgggggAGTTGTTGAAGGGTAAAGCGGTTGAGGCGGGGTAATCTGCTCTCGCAGTGTTTGCCGGATGCGGCGTGAACGCCTGATCCGACCTACGTGTGACGTGTAGGCCTGATAAGACGCGATAAGCGTCGCatcag                                                                                                                                           >  2:514265‑M2/3‑138 (MQ=255)
    tATGGGTGCGGAAATTGTTGAAGGGTAAAGCGGTTAAGGCGGGGTAATCTGCTCTCGCAGTGTTTGCCGGATGCGGCGTGAACGCCTTATCCGACCTACGTGTGACGTGTAGGCCTGATAAGACGCGATAAGCGTCGCatcag                                                                                                                                           >  1:843475‑M2/1‑138 (MQ=255)
    gatGGGTGCGGAAATTGTTGAAGGGTAAAGCGGTTAAGGCGGGGTAATCTGCTCTCGCAGTGTTTGCCGGATGCGGCGTGAACGCCTTATCCGACCTACGTGTGACGTGTAGGCCTGATAAGACGCGATAAGCGTCGCatcag                                                                                                                                           >  2:526528‑M2/2‑138 (MQ=255)
         gTGCGGAAAGTGTTGAAGGGTAAAGCGGTTAAGGCGGGGTAATCTGCTCTCGCAGTGTTTGCCGGATGCGGCGTGAACGCCTTATCCGACCTACGTGTGACGTGTAGGCCTGATAAGACGCGATAAGCGTCGCATCAGGCAtg                                                                                                                                      <  1:910964/143‑1 (MQ=255)
          tGCGGAAATTGTTGAAGGGTAAAGCGGTTAAGGCGGGGTAATCTGCTCTCGCAGTGTTTGCCGGATGCGGCGTGAACGCCTTATCCGACCTACGTGTGACGTGTAGGCCTGATAAGACGCGATAAGCGTCGCATCAGGCAtgc                                                                                                                                     <  1:876484/143‑1 (MQ=255)
            cGGAAATTGTTGAAGGGTAAAGCGGTTAAGGCGGGGTAATCTGCTCTCGCAGTGTTTGCCGGATGCGGCGTGAACGCCTTATCCGACCTACGTGTGACGTGTAGGCCTGATAAGACGCGATAAGCGTCGCTTCGGGCagggtg                                                                                                                                   >  2:1013656/1‑138 (MQ=255)
            cGGAAATTGTTGAAGGGTAAAGCGGTTAAGGCGGGGTAATCTGCTCTCGCAGTGTTTGCCGGATGCGGCGTGAACGCCTTATCCGACCTACGTGTGACGTGTAGGCCTGATAAGACGCGATAAGCGTCGCATCAGGCAtgctg                                                                                                                                   <  1:914038/143‑1 (MQ=255)
               aaaTTGTTGAAGGGTAAGGCGGTTAAGGCGGGGGAATCTGCTCTCGCAGTGTTTGCCGGATGCGGCGTGTACGCCTTATCCGACCTACGTGTGACGTGTAGGCCTGATAAGACGCGATAAGCGTCGCATCAGGCATGCTGCTc                                                                                                                                <  1:167823/143‑1 (MQ=255)
                 aTTGTTGAAGGGTAGAGCGGTTAAGGCGGGGTAATCTGCTCTCGCAGTGTTTGCCGGATGCGGCGTGAACGCCTTATCCGACCTACGTGTGACGTGTAGGCCTGATAAGACGCGATAAGCGTCGCATCAGGCATGCTGCTCCa                                                                                                                              <  2:945020/143‑1 (MQ=255)
                     ttgAAGGGTAAAGCGGTTAAGGCGGGGTAATCTGCTCTCGCAGTGTTTGCCGGATGCGGCGTGAACGCCTTATCCGACCTACGTGTGACGTGTAGGCCTGATAAGACGCGATAAGCGTCGCATCAGGCATGCCGCCCCAGAcg                                                                                                                          >  2:83447/1‑143 (MQ=255)
                       ggaGGGTAAAGCGGTTAAGGCGGGGTAATCTGCTCTCGCAGTGTTTGCCGGATGCGGCGTGAACGCCTTATCCGACCTACGTGTGACGTGTAGGCCTGATAAGACGCGATAAGCGTCGCATCAGGCATGCTGCTCCAGAcgcc                                                                                                                        <  2:301369/141‑1 (MQ=255)
                       gAAGGGTAAAGCGGTTAAGGCGGGGTAATCTGCTCTCGCAGTGTTTGCCGGATGCGGCGTGAACGCCTTATCCGACCTACGTGTGACGTGTAGGCCTGATAAGACGCGATAAGCGTCGCATCAGGCGTACTGCTCCAGAcgcc                                                                                                                        >  2:500740/1‑143 (MQ=255)
                       gAAGGGTAAAGCGGTGAAGGCGGGGTAATCTGCTCTCGCAGTGTTTGCCGGATGCGGCGTGAACGCCTTATCCGACCTACGTGTGACGTGTAGGCCTTATAAGACGCGATAACCGTCGCATCAGGCATGCTGCTCCAGAcgcc                                                                                                                        <  1:567164/143‑1 (MQ=255)
                        acgggTAAAGCGGTTAAGTCGGGGTAATCTGCTCTCGCAGTGTTTGCCGGATGCGGCGTGAACGCCTTAACCGACCTACGTGTGACGTGTAGGCCTGATACGACGCGATAAGCCTCGCATCAGGCATGCCGCTCCAGAcaccg                                                                                                                       >  2:579356/3‑143 (MQ=38)
                           ggTAAAGCGGTTAAGGCGGGGTAATCTGCTCTCGCAGTGTTTGCCGGATGCGGCGTGAACGCCTTATCCGACCTACGTGTGACGTGTAGGCCTGATAAGACGCGATAAGCGTCGCATCAGGCATGCTGCTCCAGACGCCGCaa                                                                                                                    <  1:834511/143‑1 (MQ=255)
                               aaGCGGTTAAGGCGGGGTAATCTGCTCTCGCAGTGTTTGCCGGCTGCGGCGTGAACGCCTTATCCGACCTACGTGTGACGTGTAGGCCTGATAAGACGCGATAAGCGCCGCATCAGGCATGCTGCTCCAGACGCCGCAACTTa                                                                                                                >  2:1008985/1‑143 (MQ=255)
                               aaGCGGTTAAGGCGGGGTAATCTGCTCTCGCAGTGTCTGCCGGATGCGGCGTGAACGCCTTATCCGACCTACGTGTGACGTGTAGGCCTGATAAGACGCGATAAGCGTCGCATCAGGCATGCTGCTCCAGACGCCGCAACTTa                                                                                                                >  2:726277/1‑143 (MQ=255)
                                         ggCGGGGTAATCTGCTCTCGCAGTGTTTGCCGGATGCGGCGTGAACGCCTTATCCGACCTACGTGTGACGTGTAGGCCTGATAAGACGCGATAAGCGTCGCATCAGGCATGCTGCTCCAGACGCCGCAACTTACTGCTGTGAc                                                                                                      <  1:560432/143‑1 (MQ=255)
                                          gCGGGGTAATCTGCTCTCGCAGTGTTTGCCGGATGCGGCGTGAACGCCTTATCCGCCCTACGTGTGACGTGTAGGCCTGATAAGACGCGCTCAGCGTCGCACCAGACATGCTGGCCCCGACGCCGCAACTTACCCCTGTGAcc                                                                                                     >  2:9704/1‑142 (MQ=37)
                                           cGGGGTAATCTGCTCTCGCAGTGTTTGCCGGATGCGGCGTGAACGCCTTATCCGACCTACGTGTGACGTGTAGGCCTGATAAGACGCGATAAGCGTCGCATCAGGCATGCTGCTCCAGACGCCGCAACTTACTGCTGTGACGc                                                                                                    >  2:78998/1‑143 (MQ=255)
                                             gggTAATCTGCTCTCGCAGTGTTTGCCGGATGCGGCGTGAACGCCTTATCCGACCTACGTGTGACGTGTAGGCCTGATAAGACGCGATAAGCGTCGCATCAGGCATGCTGCTCCAGACGCCGCAACTTACTGCTGTGACGCct                                                                                                  <  2:392567/143‑1 (MQ=255)
                                                    cTGCTCTCGCAGTGTTTGCCGGATGCGGCGTTAACGCCTTATCCGACCTACGTGTGACGTGTAGGCCTGATAAGACGCGATAAGCGTCGCATCAGGCATGCTGCTCCAGACGCCGCAACTTACTGCTGTGACGCCTGCTGaaa                                                                                           <  1:329478/143‑1 (MQ=255)
                                                      gcggttgCAGTGTTTGCCGGATGCGGCGTGAACGCCTTATCCGACCTACGTGTGACGTGTAGGCCTGATAAGACGCGATAAGCGTCGCATCAGGCATGCTGCTCCAGACGCCGCAACTTACTGCTGTGACGCCTGCTGAAACa                                                                                         <  1:646306/137‑1 (MQ=255)
                                                        tctcGCAGTGTTTGCCGGATGCGGCGTGAACGCCTTATCCGACCTACGTGTGACGTGTAGGCCTGATAAGACGCGATAAGCGTCGCATCAGGCATGCTGCTCCAGACGCCGCAACTTACTGCTGTGACGCCTGCTGAAACAgg                                                                                       <  1:908470/143‑1 (MQ=255)
                                                        tctcGCAGTGTTTGCCGGATGCGGCGTGAACGCATTATGCCAGCTACTTGTGACGTGTAGGCCTGATAAGACGCGATAAGCGTCGCATCAGGCGTGCTGCTCCAGACGCCGCAACTTACTGCTGTGACGCCTGCTGAAACAgg                                                                                       <  2:1020413/143‑1 (MQ=39)
                                                                tggctGCCGGATGCGGTGTGCACGCGTGCGCCGACCTACGTCTGACGGGTAGGCCTGATAAGACGCGATGAGCGTCGCATCAGGCATGCTGCTCCGGACGCCGCAACTTACTGCTGTGACGCCTGCTGAAACAGGTTTTCCca                                                                               <  2:408041/139‑1 (MQ=255)
                                                                  tttGCCGGATGCGGCGTGAACGCCTTATCCGACCTACGTGTGACGTGTAGGCCTGATAAGACGCGATAAGCGTCGCATCAGGCATGCTGCTCCCGGGGGGGCCGCATCCCCCCGTGACGCCTGCTGCAACAGGTTTTCCcaca                                                                             >  2:1019274/1‑143 (MQ=25)
                                                                          aTGCGGCGTGAACGCCTTATCCGACCTACGTGTGACGTGTAGGCCTGATAAGACGCGATAAGCGTCGCATCAGGCATGCTGCTCCAGACGCCGCAACTTACTGCTGTGACGCCTGCTGAAACAGGTTTTCCCACATATCGGTc                                                                     <  1:1013656/143‑1 (MQ=255)
                                                                            gcggcgTGACCGCCGTATGAGACGGACGGGTGACGTGTAGGCCTGAGAGGACGCGATAAGCGTCGCATCAGGCATGCTGCTCCGGACGCCGCAACTTACTGCTGTGACGCCTGCTGAAACGGGTTTTCCCACATATCGGTCAc                                                                   <  2:413835/143‑1 (MQ=255)
                                                                            gcggcgTGAACGCCTTATCCGACCTACGTGTGACGTGTAGGCCTGATAAGACGCGATAAGCGTCGCATCAGGCATGCTGCTCCAGACGCCGCAACTTACTGCTGTGACGCCTGCTGAAACAGGTTTTCCCACATATCGGTCAc                                                                   <  1:993931/143‑1 (MQ=255)
                                                                            cgcgcgTGAAGGCCTTATCCGCCCTACGTGTGACGTGTAGGCCTGATAAGACGCGATAAGCGTCGCATCAGGCATGCTGCTCCAGACGCCGCAACTTACTGCTGTGACGCCTGCTGAAACAGGTTTTCCCACATATCGGTCAc                                                                   <  1:344785/140‑1 (MQ=255)
                                                                               gcgTGAACGCCTTATCCGACCTACGTGTGACGTGTAGGCCTGATAAGACGCGATAAGCGTCGCATCAGGCATGCTGCTCCAGACGCCGCAACTTACTGCTGTGACGCCTGCTGAAACAGGTTTTGCCACCTATCGGTCAcctc                                                                >  1:138603/1‑141 (MQ=255)
                                                                                cgTGAACGCCTTATCCGACCTACGTGTGACGTGTAGGCCTGATAAGACGCGATAAGCGTCGCATCAGGCATGCTGCTCCAGACGCCGCAACTTACTGCTGTGACGCCTGCTGAAACAGGTTTTCCCACATATCg                                                                        >  1:453480/1‑134 (MQ=255)
                                                                                cgTGAACGCCTTATCCGACCTACGTGTGACGTGTAGGCCTGATAAGACGCGATAAGCGTCGCATCAGGCATGCTGCTCCAGACGCCGCAACTTACTGCTGTGACGCCTGCTGAAACAGGTTTTCCCACATATCg                                                                        <  2:453480/134‑1 (MQ=255)
                                                                                cgTGAACGCCTGATCCGACCTACGTGTGACGTGTGGGCCCGATAAGACGCGATAAGCGTCGCATCAGGCATGCTGCTCCAGACGCCGCAACTTACTGCTGTGACGCCTGCTGAAACAGGTTTTCCCACATATCGGTCACCAgc                                                               <  1:35095/143‑1 (MQ=255)
                                                                                         cTTATCCGACCTACGTGTGACGTGTAGGCCTGATAAGACGCGATAAGCGTCGCATCAGGCATGCTGCTCCAGACGCCGCAACTTACTGCtgt                                                                                                         >  2:65148/1‑92 (MQ=255)
                                                                                         cTTATCCGACCTACGTGTGACGTGTAGGCCTGATAAGACGCGATAAGCGTCGCATCAGGCATGCTGCTCCAGACGCCGCAACTTACTGCtgt                                                                                                         <  1:65148/92‑1 (MQ=255)
                                                                                             tCCGACCTACGTGTGACGTGTAGGCCTGATAAGACGCGATAAGCGTCGCAGCAGGCGTGCTGCTCCAGACGCCGCAACTTACTGCTGTGACGCCTGCTGAAACAGGTTTTCCCACATATCGGTCACCAGCGCCTGGTCAcgcg                                                  >  1:543209/1‑143 (MQ=255)
                                                                                              ccgaccgaCGTGGGACGTGTAGGCCTGATAAGACGGGATAAGCGTCGCGTCAGGCATGCTGCTCCAGACGCCGCAACTTACTGCTGTGACGCCGGCTGAAATAGGTTTTCCCACATATCGGTCACCAGCGCCTGGTCACgcgg                                                 <  2:920304/143‑1 (MQ=255)
                                                                                              ccGAGCTACGTGTGACGTGTAGGCCTGATAAGACGCGATAAGCGTCGCATCAGGCATGCTGCTCCAGACGCCGCAACTTACTGCTGTGACGCCTGCTGAAACAGGTTTTCCCACATATCGGTCACCAGCGCCTGGTCACgcgg                                                 <  1:584807/143‑1 (MQ=255)
                                                                                                 aCCTACGTGTGACGTGTAGGCCTGATAAGACGCGATAAGCGTCGCATCAGGCATGCTGCTCCAGACGCCGCAACTTACTGCTGTGACGCCTGCTGAAACAGGTTTTCCCACATATCGGTCACCAGCGCCTGGTCACGCGGCGa                                              <  1:330088/143‑1 (MQ=255)
                                                                                                            aCGTGTAGGCCTGATAAGACGCGATAAGCGTCGCatcaggcctacacgtcacacgtaggtcggataaggcgttcacgccgcatccggcaaacactgcgagagcagattaccccgccttaaccgctttacccttcaacaatttc                                   <  1:86132‑M2/143‑110 (MQ=255)
                                                                                                            aCGTGTAGGCCTGATAAGACGCGATAAGCGTCGCATCAGGCATGCTGCTCCAGACGCCGCAACTTACTGCTGTGACGCCTGCTGAAACAGGTTTTCCCACATATCGGTCACCAGCGCCTGGTCACGCGGCGACAATTCGcctg                                   >  1:3380/1‑141 (MQ=255)
                                                                                                              gtgtAGGCCTGATAAGACGCGATAAGCGTCGCATCAGGCATGCTGCTCCAGACGCCGCAACTTACTGCTGTGACGCCTGCTGAAACAGGTTTTCCCACATATCGGTCACCAGCGCCTGGTCACGCGGCGACAATTCACCAGCa                                 >  2:17764/1‑143 (MQ=255)
                                                                                                                gtAGGCCTGATAAGACGCGATAAGCGTCGCATCAGGCATGCTGCTCCAGACGCCGCAACTTACTGCTGTGACGCCTGCTGAATCAGGTTTTCCCACATATCGGTCACCAGCGCCTGGTCACGCGGCGACAATTCACTAGCAcc                               >  1:225699/1‑143 (MQ=255)
                                                                                                                 tAGGCCTGATAAGACGCGCTAAGCGTCGCATCAGGCATGCTGCTCCAGACGCCGCAACTTACTGCTGTGACGCCTGCTGAAACAGGTTTTCCCACATATCGGTCACCAGCGCCTGGTCACGCGGCGACAATTCACCAGCACCa                              <  2:651012/143‑1 (MQ=255)
                                                                                                                 tAGGCCTGATAAGACGCGATAAGCGTCGCatcaggcctacacgtcacacgtaggtcggataaggcgttcacgccgcatccggccaacactgccagagcagattaccccgccttcaccgcttccccctccaccactttctcctc                              <  1:243088‑M2/143‑115 (MQ=255)
                                                                                                                    gCCTGATAAGACGCGATAAGCGTCGCatcaggcctacacgtcacacgtaggtcggataaggcgttcccgccgcatccggcaaacactgcgagagcagattacaccgccttaaccgctttaaacttcaacaatttccgcgccca                           <  1:227935‑M2/143‑118 (MQ=255)
                                                                                                                    gCCTGATAAGACGCGATAAGCGTCGCATCAGGCATGCTGCTCCAGACGCCGCAACTTACTGCTGTGACGCCTGCTGAAACAGGTTTTCCCACATATCGGGCACCAACGCCTGGTCACGCGGCGACAATTCCCCAGCACCACTg                           >  2:1021277/1‑143 (MQ=255)
                                                                                                                        gATAAGACGCGATAAGCGTCGCATCAGGCATGATGCTCCATACGCCGCAACTTACTGCTGTGACGCCTGCTGCAACAGGTTTTCCCACATATCGGTCACCAGCGCCTGGTCACGCGGCGACAATTCACCAGCACCAATGGCtt                       >  1:151708/1‑143 (MQ=255)
                                                                                                                           aaGACGCGATAAGCGTCGCATCAGGCATGCTGCTCCAGACGCCGCAACTTACTGCTGTGACGCCTGCTGAAACATGTTTTCCCTCATATCTGTCTCCATCGCCTGTTCACGCGTCGACAATTCACCAGCACCAATGTCttttt                    <  1:637005/143‑1 (MQ=255)
                                                                                                                              aCGCGATAAGCGTCGCATCAGGCATGCTGCTCCAGACGCCGCAACTTACTGCTGTGACGCCTGCTGAAACAGGTTTTCCCACATATCGGTCACCAGCGCCTGGTCACGCGGCGACAATTCACCAGCACCAATGGCTTTTTCCa                 <  1:17764/143‑1 (MQ=255)
                                                                                                                              aCGCGATAAGCGTCGCATCAGGCATGCGGCTCCAGACGCCGCAACTTACTGCTGTGACGCCTGCTGAAACAGGTTTTCCCACATATCGGTCACCAGCGCCTGGTCACGCGGCGACAATTCACCAGCACCAATGGCTTTTTCCa                 <  2:67455/143‑1 (MQ=255)
                                                                                                                              aCGCCATAAGCGTCGCACCAGGCATGCTGCTCCACACGCCGCAACTTACGGCTGTGACGCCTGCTCAAACAGGTTTTCCCACATATCGGTCACCAGCGCCTGGTCACGCGGCGACAATTCACCAGCTCCAATGGCTTTTTCCa                 <  1:5534/143‑1 (MQ=255)
                                                                                                                                gcgctcaGCGCCGCATCGGGCATGCTGCTCCAGTCGCCGCAACTTACTGCTGTGGCGCCTGCTGCAACACGTTTTCCCACATATCGGTCACCAGCGCCTGGTCACGCGGCGACAATTCACCAGCACCAATGGCTTTTTCCAGa               <  2:1016661/137‑1 (MQ=255)
                                                                                                                                gcgATAAGCGTCGCATCAGGCATGCTGCTCCAGACGCCGCAACTTACTGCTGTGACGCCTGCTGAAACAGGTTTTCCCACATATCGGTCACCAGCGCCTGGTCACGCGGCGACAATTCACCAGCACCAATGGCTTTTTCCAGa               <  1:726277/143‑1 (MQ=255)
                                                                                                                                     aaGCGTCGCATCAGGCATGCTGCTCCAGACGCCGCAACTTACTGCTGTGACGCCTGCTGAAACAGGTTTTCCCACATATCGGTCACCAGCGCCTGGTCACGCGGCGACAATTCACCAGCACCAATGGCTTTTTCCAGACTCTg          <  1:666283/143‑1 (MQ=255)
                                                                                                                                       gCGTCGCATCAGGCATGCTGCTCCAGACGCCGCAACTTACTGCTGTGACGCCTGCTGAAACAGGTTTTCCCACATATCGGTCACCAGCGCCTGGTCACGCGGCGACAATTCACCAGCACCAATGGCTTTTTCCAGACTCTGGc        >  1:381342/1‑143 (MQ=255)
                                                                                                                                          tCGCATCAGGCATGCTGCTCCAGACGCCGCAACTTACTGCTGTGACGCCTGCTGAAACAGGTTTTCCCACATATCGGTCACCAGCGCCTGGTCACGCGGCGACAATTCACCAGCACCAATGGCTTTTTCCAGACTCTGGCTaa     <  2:858351/143‑1 (MQ=255)
                                                                                                                                             cATCAGGCATGCTGCTCCAGACGCCGCAACTTACTGCTGTGACGCCTGCTGAAACCGGCTTTCCCACATATCGGTCACCAGCGCCTGGTCACGCGGCGACAATTCACCAGCACCAATGGCTTTTTCCAGACTCTGGCTACCgg  >  2:729442/1‑143 (MQ=255)
                                                                                                                                             |                                                                                                                                              
CGGTTATGGGTGCGGAAATTGTTGAAGGGTAAAGCGGTTAAGGCGGGGTAATCTGCTCTCGCAGTGTTTGCCGGATGCGGCGTGAACGCCTTATCCGACCTACGTGTGACGTGTAGGCCTGATAAGACGCGATAAGCGTCGCATCAGGCATGCTGCTCCAGACGCCGCAACTTACTGCTGTGACGCCTGCTGAAACAGGTTTTCCCACATATCGGTCACCAGCGCCTGGTCACGCGGCGACAATTCACCAGCACCAATGGCTTTTTCCAGACTCTGGCTAACGG  >  NC_000913/2443720‑2444003

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.