| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_000913 | 1,703,252 | A→T | 10.0% | intergenic (+18/+16) | add → / ← ydgJ | adenosine deaminase/putative oxidoreductase YdgJ |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 1,703,252 | 0 | A | T | 10.0% | 94.8 / 5.7 | 41 | intergenic (+18/+16) | add/ydgJ | adenosine deaminase/putative oxidoreductase YdgJ |
| Reads supporting (aligned to +/- strand): ref base A (12/24); new base T (2/2); total (14/27) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 6.02e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 2.34e-02 | |||||||||||
TTGCCGCGCCAGCTGCTGGGTTATCCCGCGAGCAAATCCGCCAGGCACAGATTAATGGTCTGGAAATGGCTTTCCTCAGCGCTGAGGAAAAACGCGCACTGCGAGAAAAAGTCGCCGCGAAGTAACAAAATGGATGGTGCAAATGCACCATCCATTTTTCATGCAAGGCACAAAGTCGCGCGATGTTTGGCGGATTCGATGCCCAGCTCAATCAACTCCATTACCTGGATTGCCTGGCTTGCCGGAACCGGATTTTCACCATCGCCATTTAACGCAT > NC_000913/1703110‑1703386 | ttGCCGCGCCAGCTGCTGGGTTATCCCGCGAGCAAATCCGCCAGGCACAGATTAATGGTCTGGAAATGGCTTTCCTCAGCGCTGAGGAAAAACGCGCACTGCGAGAAAAAGTCGCCGCGAAGTAACAAAATGGATGGTGCaaa < 1:824924/143‑1 (MQ=255) cgcgCCAGCTGCTGGGTTATCCCGCGAGCAAATCCGCCAGGCACAGATTAATGGTCTGGAAATGGCTTTCCTCAGCGCTGAGGAAAAACGCGCACTGCGAGAAAAAGTCGCCGCGAAGTAACAAAATGGATGGTGCAAATGCa < 1:566514/143‑1 (MQ=255) gcgcCAGCTGCTGGGTTATCCCGCGAGCAAATCCGCCAGGCACAGATTAATGGTCTGGAAATGGCTTTCCTCAGCGCTGAGGAAAAACGCGCACTGCGAGAAAAAGTGGCCGAGAAGTAACAAAATGGATGGTGCAAATGCAc > 1:832283/1‑143 (MQ=255) ccAGCTGCTGGGTTATCCCGCGAGCAAATCCGCCAGGCACAGATTAATGGTCTGGAAATGGCTTTCCTCAGCGCTGAGGAAAAACGCGCACTGCGAGAAAAAGTCGCCGCGAAGTAACAAAATGGATGGTGCATTTGCAccat < 2:634732/143‑1 (MQ=255) cacctgctgGGTTATCCCGCGAGCAAATCCGCCAGGCACAGATTAATGGTCTGGAAATGGCTTTCCTCAGCGCTGAGGAAAAACGCGCACTGCGAGAAAAAGTCGCCGCGAAGTAACAAAATGGATGGTGCAAATGCAccatc < 2:385447/140‑1 (MQ=255) cAGCTGGTGGGTGATCCCGCGAGCAAAGCCGCCAGGCACAGATTAATGGTCTGGAAATGGCTTTCCTCAGCGCTGAGGAAAAACGCGCACTGCTAGAAAAAGTCGCCGCGAAGTAACAAAATGGATGGTGCATTTGCAccatc < 2:1021765/143‑1 (MQ=255) gctgGTGTACCCCACCAGCAACTCCTCCAGTCCTTGATTAATGGTCTGGATACGGCTTCCCTCAGCGCTGAGCAAAAACGCGCACTGCGAGAAAAAGTCGCCCCGAAGTAACAAAATGGATGGTGCAAATGCACCATCCAttt < 1:834002/143‑1 (MQ=255) gcgAGCAAATCCGCCAGGCACAGATTAATGGTCTGGAAATGGCTTTCCTCAGCGCTGAGGAAAAACGCGCACTGCGAGAAAAAGTCGCCGCGAAGTAACAAAATGGATGGTGCAAATGCACCATCCATTTTTCa < 1:156611/134‑1 (MQ=255) gcgAGCAAATCCGCCAGGCACAGATTAATGGTCTGGAAATGGCTTTCCTCAGCGCTGAGGAAAAACGCGCACTGCGAGAAAAAGTCGCCGCGAAGTAACAAAATGGATGGTGCAAATGCACCATCCATTTTTCa > 2:156611/1‑134 (MQ=255) gtccctaGGCATAGATGCATGGTCTGGAAATGGCCTTCCTCAGCGCTGAGGAAAAACGCGCACTGCGAGAAAAAGTCGCCGCGAAGTAACAAAATGGATGGTGCAAATGCACCATCCATTTTTCATGCAAGGCACAAAGTcgc < 1:434294/137‑1 (MQ=255) cccccAGGCACAGACTAATGGTCTGGAAATGGCTTTCCTCAGCGCTGAGGAAAAACGCGCACTGCGAGAAAAAGTCGCCGCGAAGTAACAAAATGGATGGTGCAAATGCACCATCCATTTTTCATGCAAGGCACAAAGTcgcg < 1:457701/140‑1 (MQ=255) caGATGAATGGTCGGGAAATGGCTTTCCTCAGCGCTGAGGAAAAACGCGCACTGCGAGAAAAAGTCGCCGCGAAGTAACAAAATGGATGGTGCAAATGCACCATCCATTTTTCATGCAAGGCACAAAGTCGCGCGATGTTTgg < 2:267401/143‑1 (MQ=255) aGATTAATGGTCTGGAAATGGCTTTCCTCAGCGCTGAGGAAAAACGCGCACTGCGAGAAAAAGTCGCCGCGAAGTAACAAAATGGATGGTGCAAATGCACCATCCAATTTTCATGCAAGGCACAAAGTCGCGCGAGGGTTGGc > 2:780211/1‑143 (MQ=255) ttAATGGTCTGGAAATGGCTTTCCTCAGCGCTGAGGAAAAACGCGCACTGCGAGAAAAAGTCGCCGCGAAGTAACAAAATGGATGGTGCAAATGCACCATCCATTTTTCATGCAAGGCACAAAGTCGCGCGATGTTTGGCGGa < 2:455391/143‑1 (MQ=255) atagtGGTCTGGGAATGGCTTTCCTCAGCGCTGAGGAAAAACGCGCACGGCGAGAAAAAGTCGCCGCGAAGTAACAAAATGGATGGTGCAAATGCACCATCCATTTTTCATGCAAGGCACAAAGTCGCGCGATGTTTGGCGGa < 2:456492/139‑1 (MQ=255) tCTGGACATCTCTTCCCTCAGCGCTGACGAAACACGCGGCATGCGCGAAACCGTCCCTGCGTCGAAAACAACTGGATGGTGAAACTCCACCCTTGATGTTTTATGTCAGGCCCATAGTTGCGCGATGTTTGGCGGATTCGATg < 2:698186/143‑1 (MQ=255) tgcaaaTGTCTTTGCGTAGCGGTGAGGAAAAACGCGCACTGCGAGAAAAAGTCGCCGCGAAGTAACAAAATGGATGGTGCAAATGCACCATCCATTTTTCATGCAAGGCACAAAGTCGCGCGATGTTTGGCGGATTCGATGcc < 1:854617/140‑1 (MQ=255) aactGGCTTGCCGCAGCGCGGAGGAAAACCGCTCACTGCGAGAAAAAGCCGCCGCGAAGTAACAAAAGGGATGGTGCAAATGCACCATCCATTTTGCATGCAAGGCACAAAGTCGCGCGATGTTTGGCGGATTCGATGCCCAg < 2:417290/140‑1 (MQ=255) gccctCCACAGCGCTGAGGAAAAACGCGCACTGCGACAAAAAGTCGCCGCCAAGTAACAAAATGGATGGTGCAAAGGCACCATCCATTTTTCATGCAAGGCACAAAGTCGCGCGATGTTTGGCGGATTCGATGCCCAGCtcaa < 1:705748/139‑1 (MQ=255) gCTTTCCTCAGCGCTGAGGAAAAACGCGCACTGCGAGAAAAAGTCGCCGCGAAGTAACAAAATGGATGGTGCAAATGCACCATCCATTTTTCATGCAAGGCACAAAGTCGCGCGATGTTTGGCGGATTCGATGCCCAGCtcaa < 2:12354/143‑1 (MQ=255) tCAGCGCTGAGGAAAAACGCGCACTGCGAGAAAAAGTCGCCGCGAAGTAACAAAATGGATGGTGCAGATGCACCATCCATTTTTCATGCAAGGCACAAAGTCGCGCGATGTTTGGCGGATTCGATGCCCCGCTCACTCAACTc > 1:3301/1‑143 (MQ=255) aGCGCTGAGGAAAAACGCGCACTGCGAGAAAAAGTCGCCGCGAAGTAACAAAATGGATGGTGCAAATGCACCATCCATTTTTCATGCAAGGCACAAAGTCGCGCGATGTTTGGCGGATTCGATGCCCAGCTCAATCAACTCCa > 2:946200/1‑143 (MQ=255) aGCGCTGAGGAAAAACGCGCACTGCGAGAAAAAGTCGCCGCGAAGTAACAAAATGGATGGTGCAAATGCACCATCCATTTTTCATGCAAGGCACAAAGTCGCGCGATGTATGATGTAGTCGTTTGCCAGCTTAATCAACGCCa > 2:460033/1‑143 (MQ=255) gcgcGGAGGAAAAACGCGCACTGCGAGAAAAAGTCGCCGCGAAGTAACAAAATGGATGGTGCAGATGCACCATCCATTTTTCATGCAAGGCACAAAGTCGCGCGATGTTTGGCGGATTCGATGCCCAGCTCAATCAACTCCAt < 2:528416/143‑1 (MQ=255) tGAGGAAAAACGCGCACTGCGAGAAAAAGTCGCCGCGAAGTAACAAAATGGATGGTGCAAATGCACCATCCATTTTTCATGCAAGGCACAAAGTCGCGCGATGTTTGGCGGATTCGATGCCCAGCTCAATCAACTCCATTAcc > 2:411430/1‑143 (MQ=255) aGGAAAAACGCGCACTGCGAGAAAAAGGCGCCGCGAAGTAACAAAATGGATGGTGCAAAGGCACCATCCATTTTGCATGCAAGGCACAAAGTCGCGCGATGTTTGGCGGATTCGATGCCCAGCTCAATCAACTCCATTACCTg < 2:1040427/143‑1 (MQ=255) aaCGCGCACTGCGAGAAAAAGTCGCCGCGAAGTAACAAAATGGATGGTGCAAATGCACCATCCATTTTTCATGCAAGGCACAAAGTCGCGCGATGTTTGGCGGATTCGATGCCCAGCTCAATCAACTCCATTACCTGGATTGc < 2:676782/143‑1 (MQ=255) cGAGAAAAAGTCGCCGCGAAGTAACAAAATGGATGGTGCAAATGCACCATCCATTTTTCATGCAAGGCACAAAGTCGCGCGATGTTTGGCGGATTCGATGCCCAGCTCAATCAACTCCATTACCTGGATTGCCTGGCTTGCCg > 1:671212/1‑143 (MQ=255) agaAAAAGTCGCCGCGAAGTAACAAAATGGATGGTGCAAATGCACCATCCATTTTTCATGCAAGGTACAAAGTCGCGCGATGTTTGGCGGATTCGATGCCCAGCTAAATCAACACCATGACCTGGATTGCCTGGCTTGCAGGa > 1:962283/1‑143 (MQ=255) aaaaaGTCGCCGCGAAGTAACAAAATGGATGGTGCAAATGCACCATCCATTTTTCATGCAAGGCACAAAGTCGCGCGATGTGTGGCGGATTCGATGCCCAGCTCAATCAACTCCATTACCTGGATTGCCTGGCTTGCCGGAAc > 2:126976/1‑143 (MQ=255) aaaGTCGCCGCGAAGTAACAAAATGGATGGTGCAAATGCACCATCCATTTTTCATGCAAGGCACAAAGTCGCGCGATGTTTGGCGGATTCGATGCCCAGCTCAATCAACTCCATTACCTGGATTGCCTGGCTTGCCGGAACCg > 1:675528/1‑143 (MQ=255) cgcgAGGTAACAGAATGGATGGTGCGAATGCACCATCCATGTTTCATGCAAGGCACAAAGTCGCGCGATGTTTGGCGGATTCGATGCCCAGCTCAATCAACTCCTTTACCTGGATTGCCTGGCTTGCCGGAACCGGATTTTCa < 2:482980/143‑1 (MQ=255) aGTAACAAAATGGATGGTGCAAATGCACCATCCATTTTTCATGCAAGGCACAAAGTCGCGCGATGTTTGGCGGATTCGATGCCCAGCTCAATCAACTCCATTACCTGGATTGCCTGGCTTGCCGGAACCGGATTTTCACCATc < 1:292087/143‑1 (MQ=255) gTAACAAAATGGACGGTGCAAATGCACCATCCATTTTTCATGCAAGGCACAAAGTCGCGCGATGTTTGGCGGATTCGATGCCCAGCTCAATCAACTCCATTACCTGGATTGCCTGGCTTGCCGGAACCGGATTTTCACCATCg < 2:499073/143‑1 (MQ=255) atgaaaaaTGGATGGTGCATTTGCACCATCCATTTTTCATGCAAGGCACAAAGTCGCGCGATGTTTGGCGGATTCGATGCCCAGCTCAATCAACTCCATTACCTGGATTGCCTGGCTTGCCGGAACCGGATCTTCACCATCGc > 1:215658/5‑143 (MQ=39) atgaaaaaTGGATGGTGCATTTGCACCATCCATTTTTCATGCAAGGCACAAAGTCGCGCGATGTTTGGCGGATTCGATGCCCAGCTCAATCAACTCCATTACCTGGATTGCCTGGCTTGCCGCAGCGGGATTTTCACCATctc > 1:215698/5‑141 (MQ=38) cAAAATGGATGATGCAAATGCACCATCCATTTTTCATGCAAGGCACAAAGTCGCGCGACGTTTGGCGGATTCGATGCCCAGCTCAATCAACTCCATTACCTGGATTGCCTGGCTTGCCGGAACCGGATTTTCACCATCGCCAt < 2:493609/143‑1 (MQ=255) atggatggTGCAAATGCACCATCCATTTTTCATGCAAGGCACAAAGTCGCGCGATGTTTGGCGGATTCGATGCCCAGCTCAATCAACTCCATTACCTGGATTGCCTGGCTTGCCGGAACCGGATTTTCACCATCGCCATTTaa < 1:411430/143‑1 (MQ=255) ggatggTGCAAATGCACCATCCATTTTTCATGCAAGGCACAAAGTCGCGCGATGTTTGGCGGATTCGATGCCCAGCTCAATCAACTCCATTACCTGGATTGCCTGGCTTGCCGGAACCGGATTTTCACCATCGCCATTTAACg < 1:882831/143‑1 (MQ=255) ggtggCGCAAATCCACCTCCTATTTTTCATGCAATGCACAAAGTCCCGCGATCTTTGGCGGATTCGATGCCCAGCCCCATCACCTCCATTACCTGTATTGCCTGGCTTGCCGGAACCGGATTTTCACCATCGCCATTTAACGc < 2:809443/141‑1 (MQ=255) gatggTGCAAATGCACCATCCATTTTTCATGCAAGGCACAAAGTCGCGCGATGTTTGGCGGATTCGATGCCCAGCTCAATCAACTCCATTACCTGGATTGCCTGGCTTGCCGGAACCGGATTTTCACCATCGCCATTTCACGc > 1:902580/1‑143 (MQ=255) tggTGCAAATGCACCATCCATTTTTCATGCAAGGCACAAAGTCGCGCGATGTTTGGCGGATTCGATGCCCAGCTCAATCAACTCCATTACCTGGATTGCCTGGCTTGCCGGAACCGGATTTTCACCATCGCCATTTAACGCAt < 2:661473/143‑1 (MQ=255) | TTGCCGCGCCAGCTGCTGGGTTATCCCGCGAGCAAATCCGCCAGGCACAGATTAATGGTCTGGAAATGGCTTTCCTCAGCGCTGAGGAAAAACGCGCACTGCGAGAAAAAGTCGCCGCGAAGTAACAAAATGGATGGTGCAAATGCACCATCCATTTTTCATGCAAGGCACAAAGTCGCGCGATGTTTGGCGGATTCGATGCCCAGCTCAATCAACTCCATTACCTGGATTGCCTGGCTTGCCGGAACCGGATTTTCACCATCGCCATTTAACGCAT > NC_000913/1703110‑1703386 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |