New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 4024573	43 (0.760)	4 (0.070)	4/254	NT	8.7%	coding (249/489 nt)	rfaH	transcription antiterminator RfaH
	?	NC_000913	= 4024606	43 (0.790)					coding (216/489 nt)	rfaH	transcription antiterminator RfaH

CGGTGAAAATGGCCTGAAAGCCTTCGAACGCGCCTTCGGTAATAATCACCTTATCACCCGGATAAGGGGTTGCCGGATCGACAATGTCTTTCGGTTTATATACCGATAGCTGATGAATAACCGCCGATGGGACTATCGCTGGCGAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/4024428‑4024573 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgacCCGCGGTGTCAGCCACTTCGTGCGCTTTGGCGCGTCGCCAGCGATAGTCCCATCGGCGGTTATTCATCAGCTATCGGTATATAAACCGAAAGACATTGTCGATCCGGCAACCCCTTATCCGGGTGATAAGGTGATTATTACC  <  NC_000913/4024606‑4024465                                                                                                                                                                                                                                                                                                  CGGTGAGAATGGCCTGAAAGCCTTCGAACGCGCCTTCGGTAATAATCACCTTATCACCCGGATAAGGGGTTGCCGGATCGACAATGTCTTTCGGTTTATATACCGATAGCTGATGAATAACCGCCGATGGGACTATCGCTGGC                                                                                                                                                   <  2:1097512/143‑1                                          ATAATCGCCTTCTCACCCGGATAAGGGGTTGCCGGATCGACAATGTCTTTCGGTTTATATACCGATAGCTTATGAATCACCGCCGATGGGACTATCGCTGGCGACCCGCGGTGTCAGCCACTTCGTGCGCTTTGGCGCGTCGC                                                                                                          <  2:508523/143‑1                                                              ATAAGGTGTTGCCGGATCGACAATGTCTTTCGGTTTATATACCGATAGCTGATGAATAACCGCCGATGGGACTATCGCTGGCGACCCGCGGTGTCAGCCACTTCGTGCGCTTTGGCGCGTCGCCAGCGATAGTCCCATCGGCG                                                                                      <  1:367757/143‑1                                                                              TCGACAATGTCTTTCGGTTTATATACCGATAGCTGATGAATAACCGCCGATGGGACTATCGCTGGCGACCCGCGGTGTCAGCCACTTCGTGCGCTTTGGC                                                                                                                 >  1:983051/1‑100                                                                              TCGACAATGTCTTTCGGTTTATATACCGATAGCTGATGAATAACCGCCGATGGGACTATCGCTGGCGACCCGCGGTGTCAGCCACTTCGTGCGCTTTGGC                                                                                                                 <  2:983051/100‑1                                                                                                                                              GCGACCCGCGGTGTCAGCCACTTCGTGCGCTTTGGCGCGTCGCCAGCGATAGTCCCATCGGCGGTTATTCATCAGCTATCGGTATATAAACCGAAAGACATTGTCGATCCGGCAACCCCCTATCCGGGTGATAAGGCGATTAT      >  1:920269/1‑143                                                                                                                                                 ACCCGCGGTGTCAGCCACTTCGTGCGCTTTGGCGCGTCGCCAGCGATAGTCCCATCGGCGGTTATTCATCAGCTATCGGTATATAAACCGAAAGACATTGTCGATCCGGCAACCCCTTATCCGGGTGATAAGGTGATTATTAC   <  1:523785/143‑1                                                                                                                                                  CCCGCGGTGTCAGCCACTTCGTGCGCTTTGGCGCGTCGCCAGCGATAGTCCCATCGGCGGTTATTCATCAGCTATCGGTATATAAACCGAAAGACATTGTCGATCCGGCAACCCCTTATCCGGGTGATAAGGTGATTATTACC  <  1:437790/143‑1                                                                                                                                                                                                                                                                                                  CGGTGAAAATGGCCTGAAAGCCTTCGAACGCGCCTTCGGTAATAATCACCTTATCACCCGGATAAGGGGTTGCCGGATCGACAATGTCTTTCGGTTTATATACCGATAGCTGATGAATAACCGCCGATGGGACTATCGCTGGCGAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/4024428‑4024573 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgacCCGCGGTGTCAGCCACTTCGTGCGCTTTGGCGCGTCGCCAGCGATAGTCCCATCGGCGGTTATTCATCAGCTATCGGTATATAAACCGAAAGACATTGTCGATCCGGCAACCCCTTATCCGGGTGATAAGGTGATTATTACC  <  NC_000913/4024606‑4024465

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.