New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	274038 =	NA (NA)	3 (0.060)	3/252	NT	NA	noncoding (1112/1195 nt)	IS5	repeat region
	?	NC_000913	274083 =	NA (NA)					noncoding (1067/1195 nt)	IS5	repeat region

TCAACGATCCCGCAGGAGAAAGCCAGAAACTTCGCCGCATCGCTGACAGCACTGTTATGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGCCATTTAAGGCGTTATCC  >  NC_000913/273897‑274093                                                                                                                                              |                                                        tcAACGATCCCGCAGGAGAAAGCCAGAAACTTCGCCGCATCGCTGCCAGCACTGTTAGGGACGGTGCGAATAAGCGGGGACATTCTTCTCGGCTGACTCAGTCATTTCCTCTCCTCATGTTTGAGCCGATTTCGCCTCCCGTa                                                        >  2:242210/1‑143 (MQ=21) tcAACGATCCCGCAGGAGAAAGCCAGAAACTTCGCCGCATCGCTGAAAGCACCGCTATGGAAGGTGCGCATAAGCGGGGCAACTCTTCTCGCCTGACTCAGTCCTTTTATTTCTTCATGTTTGAGCCGATGTTTTCTCCCGtc                                                        >  2:439567/1‑142 (MQ=21)      gATCCCGCAGGAGAGAGCCTGAAACTTCGCCGCAGCGCTGACAGCACTGTTATGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGc                                                   <  2:592519/143‑1 (MQ=255)               ggAGAAAGCGAGACGCTGCGCCGCAGCGCGGCCAGCACTGTTATGGGAGGCGCGAATAAGCGGGGAAACTCTTCTCGGCTGACTCAGTCATGTCATTCCTGCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCa                                          <  2:606746/143‑1 (MQ=14)                gagaAAGCCAGAAACTTCGCCGCATCGCTGACAGCACTGTTATGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAg                                         <  2:994403/143‑1 (MQ=255)                 ggaAGGCCAGAAACTTCGCCGCATCGCTGACAGCACTGTTATGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGc                                        <  1:635/142‑1 (MQ=255)                   aaaGCCAGAAACGTCGCCGCATCGCTGACAGCACTGTTATGGAAGGTGCGAATAAGCGGGGCAATTCATCTCAGCTGACTCAGTCATTTCAATTCTTCAAGAGTAAAACGAATTTTCCTCCGGTAACTGCATGAAATCATCCt                                      >  2:660358/1‑143 (MQ=16)                       ccAGAAACTTCGCCGCATCGCTGACAGCACTGTTATGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTAttt                                  >  2:1051346/1‑143 (MQ=255)                        cAGAAACTTCGCCGCATCGCTGCCAGCACTGTTATGGACGGTGCGAATAAGCGGGGAAATTCTTCTCGCCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTa                                 <  1:24824/143‑1 (MQ=255)                        cAGAAACTTCGCCGCATCGCTGCCAGCACTGTTATGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTAAGCCGAATTTTTATCCCCTAAAAGCCTTGGATCAGCCTATTTa                                 >  2:61941/1‑143 (MQ=17)                         aGAAACTTCGCCGCATCGCTGACAGCACTGTTATGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAg                                >  1:859487/1‑143 (MQ=255)                          gAAACTTCGCCGCATCGCTGACAGCACTGTTATGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGa                               <  1:176431/143‑1 (MQ=255)                                   ccgcATCGCTGACAGCACTGTTATGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTCGACCGTttctt                      >  2:605085/1‑143 (MQ=255)                                    cgcATCGCTGACAGCACTGTTATGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTttcttc                     >  1:537660/1‑143 (MQ=255)                                     gcATCGCTGACAGCACTGTTATGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCCTTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATATAGACCGTTTCTCCg                    >  2:440291/1‑143 (MQ=255)                                      cATCGCTGACAGCACTGTTATGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGc                   <  1:260093/143‑1 (MQ=255)                                               gaGCACGGTTATGGAAGGTGCGAATAAGCGGTGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTCGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGCCATTTAAgg          <  2:161232/142‑1 (MQ=255)                                               cAGCACTGTTATGTAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGCCATTTAAgg          <  2:1018628/143‑1 (MQ=25)                                                aGCACTGTTATGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGAAAATGTCTTGGATCAGCGTATTTAGACCGTTTCTTCGCCATTTAAGGc         <  1:307647/143‑1 (MQ=255)                                                      gTTATGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGCCATTTAAGGCGTTATc   <  1:596488/143‑1 (MQ=32)                                                      gTTATGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGCCATTTAAGGCGTTATc   <  1:50684/143‑1 (MQ=32)                                                       ttATGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGCCATTTAAGGCGTTATcc  >  1:783487/1‑143 (MQ=32)                                                                                                                                              |                                                        TCAACGATCCCGCAGGAGAAAGCCAGAAACTTCGCCGCATCGCTGACAGCACTGTTATGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGCCATTTAAGGCGTTATCC  >  NC_000913/273897‑274093

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.