New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	1299176 =	0 (0.000)	13 (0.230)	13/264	NT	100%	coding (579/648 nt)	ychE	putative inner membrane protein
	?	NC_000913	= 1979270	NA (NA)					noncoding (1/768 nt)	IS1	repeat region

CATTAGCTATCTGTTTGGTTTCTTTGTGGCTATTGCATTGTTCGCTTTATGTTGTTGGGGATTGTTCCGCATGGCACCGTGGCTGGTACGGGTTTTACGCCAGACCGGCATCAACGTGATTACGCGTATTATGGGGCTATTGCTGATGGCATTGGGGATTGAATTTATCGTTACTGGTATTAAGGGGATTTTCCCCGGCCTGCTTAATTAATTCCTTTCAAATGAAACGGAGCTGCCATGCTCCGTTTACTTCGTCATTATTTTTACTTTGTTCCCGCG  >  NC_000913/1299035‑1299313                                                                                                                                              |                                                                                                                                          cgctgatgtccggcggtgcttttgccgttacgcaccaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccGc                                                                                                                                          <  1:1066042‑M1/2‑1 (MQ=255)  gctgatgtccggcggtgcttttgccgttacgcaccaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccGCt                                                                                                                                         <  1:955278‑M1/3‑1 (MQ=255)         tccggcggtgcttttgccgttacgcaccaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactgcagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccGCTGATGGCa                                                                                                                                  <  1:555609‑M1/10‑1 (MQ=255)                                  accaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccGCTGATGGCATTGGGGATTGAATTTATCGTTACTg                                                                                                         <  2:760320‑M1/35‑1 (MQ=255)                                           ccagtagatcaccaggctggagagctcatcgccacagacgccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccGCTGATGGCATTGGGGATTGAATTTATCGTTACTGGTATTAAgg                                                                                                >  2:129012‑M1/100‑143 (MQ=255)                                                    gaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccGCTGATGGCATTGGGGATTGAATTTATCGTTACTGGTATTAAGGGGATTTTcc                                                                                       <  1:671903‑M1/53‑1 (MQ=255)                                                     aacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccGCTGATGGCATTGGGGATTGAATCTATCGTTACTGGTATTAAGGGGATTttcac                                                                                      <  2:441258‑M1/54‑3 (MQ=255)                                                                   ctgatagaaacagaagacactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccGCTGATGGCAGTGGGGATTGAATTTATCGTTACTGGTATTAAGGGGATTTTCCCCGGCATGCttaatt                                                                        <  1:337954‑M1/68‑1 (MQ=255)                                                                     gatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccGCTGATGGCATTGGGGATTGAATTTATCGTTACTGGTATTAAGGGGATTTTCCCCGGCCTGCttaattaa                                                                      >  1:946931‑M1/74‑143 (MQ=255)                                                                             cagacgccactggagcacctcaaaaacaccatcctacactaaatctgtaagttggcagcatcaccGCTGATGGCATTGGGGATTGAATTTATCGTTACTGGTATTAAGGGGATTTTCCCCGGCCTGCTTAATTAATTCCTTTc                                                              >  2:207616‑M1/66‑143 (MQ=255)                                                                                            cacctcaaaaacaccatcagacactaaatcagtaagttggcagcatcaccGCTGATGGCATTGGGGATTGAATTTATCGTTACTGGTATTAAGGGGATTTTCCCCGGCCTGCTTAATTAATTCCTTTCAAATGAAACGGAGCt                                               >  2:102905‑M1/51‑143 (MQ=255)                                                                                                tcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccGCTGATGGCATTGGGGATTGAATTTATCGTTACTGGTATTAAGGGGATTTTCCCCGGCCTGCTTAATTAATTCCTTTCAAATGAGACGGAGCTGCCa                                           <  1:308767‑M1/97‑1 (MQ=255)                                                                                                                  actaaatcagtaagttggcagcatcaccGCTGATGGCATTGGGGATTGAATTTATCGTTACTGGTATTAAGGGGATTTTCCCCGGCCTGCTTAATTAATTCCTTTCGAATGAAGCGGAGCTGCCATGCTCCGTTTACTGCGTc                         <  1:643656‑M1/115‑1 (MQ=255)                                                                                                                    taaatcagtaagttggcagcatcaccGCTGATGGCATTGGGGATTGAATTTATCGTTACTGGTATTAAGGGGATTTTCCCCGGCCTGCTTAATTAATTCCTTTCAAATGAAACGGAGCTGCCATGCTCCGTTTACTTCGTCat                       <  2:471860‑M1/117‑1 (MQ=255)                                                                                                                            taagttggcagcatcaccGCTGATGGCATTGGGGATTGAATTTATCGTTACTGGTATTCAGGGGATGTTCCCCGGCCTGATTAATTCATTCCTTTCCAATGAACCGGAGCTGCCATGCTCCGTTTACTTCGTCCTTatttttt               <  2:1053027‑M1/125‑2 (MQ=255)                                                                                                                                         tcaccGCTGATGGCATTGGGGATTGAATTTATCGTTACTGGTATTAAGGGGATTTTCCCCGGCCTGCTTAATTAATTCCTTTCAAATGAAACGGAGCTGCCATGCTCCGTTTACTTCGTCATTATTTTTACTTTGTTCCcgcg  <  2:379728‑M1/138‑1 (MQ=255)                                                                                                                                              |                                                                                                                                          CATTAGCTATCTGTTTGGTTTCTTTGTGGCTATTGCATTGTTCGCTTTATGTTGTTGGGGATTGTTCCGCATGGCACCGTGGCTGGTACGGGTTTTACGCCAGACCGGCATCAACGTGATTACGCGTATTATGGGGCTATTGCTGATGGCATTGGGGATTGAATTTATCGTTACTGGTATTAAGGGGATTTTCCCCGGCCTGCTTAATTAATTCCTTTCAAATGAAACGGAGCTGCCATGCTCCGTTTACTTCGTCATTATTTTTACTTTGTTCCCGCG  >  NC_000913/1299035‑1299313

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.