New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 1552149	NA (NA)	5 (0.090)	5/250	NT	NA	noncoding (20/29 nt)	other	REPv120b
	?	NC_000913	= 1552160	NA (NA)					noncoding (9/29 nt)	other	REPv120b

AAGCTGAAAATGGCGCTGTAAAAGGCGCCATTTTCATATTGTAGACAACGTAGGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCATGAAAACCCTTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTTCAAATGGCGCTGTAAAAGGCGTCATTTTCATATTGTAGACAACGTAGGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCATGAAAACCCTTC  >  NC_000913/1552007‑1552291                                                                                                                                               |                                                                                                                                               aaGCTGAAAATGGCGCTGTAAAAGGCGCCATTTTCATATTGTAGACAACGTAGGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCATGAAAACCCTTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGAT                                                                                                                                                >  1:605864‑M1/1‑143 (MQ=255)     tGAAAATGGCGCTGTAAAAGGCGCCATTTTCATATTGTAGACAACGTAGGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCATGAAAACCCTTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGATAAGc                                                                                                                                            >  1:1055313/1‑143 (MQ=35)       aaaaTGGCGCTGTAAAAGGCGCCATTTTCATATTGTAGACAACGTAGGCTTTGTTCATGCCGGATGCGGGGTGAACGCCTTATACGGCATGAAAACCCTTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGATAAGCGt                                                                                                                                          >  2:714539/1‑143 (MQ=18)       aaaaTGGCGCTGTAAAAGGCGCCATTTTCATATTGTAGACAACGTAGGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCATGAAAACCCTTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGATACGCGt                                                                                                                                          >  1:753762/1‑143 (MQ=18)        aaaTGGCGCTGTAAAAGGCGCCATTTTCATATTGTAGACAACGTAGGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCATGAAAACCCTTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGATAAGCGTa                                                                                                                                         <  2:313733/143‑1 (MQ=32)          aTGGCGCTGTAAAAGGCGCCATTTTCATATTGTAGACAACGTAGGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCATGAAAACCCTTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGATAAGCGTAgc                                                                                                                                       <  1:1072910/143‑1 (MQ=32)           tGGCGCTGTAAAAGGCGCCATTTTCATATTGTAGACAACGTAGGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCATGAAAACCCTTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGATAAGCGTAgcg                                                                                                                                      >  1:776412/1‑143 (MQ=32)             gcgcTGGAAAAGGCGCCATTTTCATATTGTAGACAACGTAGGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCATGAAAACCCTTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGATAAGCGTAGCGCa                                                                                                                                    >  1:852237‑M2/1‑142 (MQ=255)               gcTGTAAAAGGCGCCATTTTCATATTGTAGACAACGTAGGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCATGAAAACCCTTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGATAAGCGTAGCGCatc                                                                                                                                  <  1:734710‑M2/143‑4 (MQ=255)                cTGTAAAAGGCGCCATTTTCATATTGTAGCCAACGTAGGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCATGACCACCCTTCCAATCCCCTAGATTGCAGTGCACGTGTAGGCCTGCTAAGCGTAGCGCgtca                                                                                                                                 <  2:804245‑M2/143‑5 (MQ=255)                  gTAAACGGCGCCATTTTCATATTGTAGACAACGTAGGCTTGGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCATGAAAACCCTTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGATAAGCGTAGCGCatcagg                                                                                                                               >  2:629540‑M2/1‑137 (MQ=255)                         gcgcCATTTTCATATTGTAGACAACGTAGGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCATGAAAACCCTTCAAATCCAATAGATTGCAGTGAACGTGTCGGCCTGATgcgctacgcttatcaggcctacac                                                                                                                        <  2:578967‑M1/143‑25 (MQ=255)                            tcatgtgcatattgtAGACAACGTAGGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCATGAAAACCCTTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGATgcgctacgcttatcaggcctacacgtt                                                                                                                     <  2:605864‑M1/136‑28 (MQ=255)                                        ggtAGACACCGTAGCCTTGGTTCATGACGGATGGCACCCAAACGCCTTATCCGGCAT‑TAAACCCTTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGATgcgctacgcttatcaggcctacacgttcactgcaatctat                                                                                                        <  2:486419‑M1/142‑41 (MQ=255)                                             aCAACGTAGGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCATGAAAACCCTTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTTCaa                                                                                                    >  1:868802/1‑143 (MQ=32)                                              cAACGTAGGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCATGAAAACCCTTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTTCaaa                                                                                                   <  1:598644/143‑1 (MQ=33)                                                            ttCATGCCGGATGCGGCGTGAACGCCTTATCCGGCATGAAAACCCTTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTTCAAATGGCGCTGTAAAAg                                                                                     <  2:687892/143‑1 (MQ=255)                                                            ttCATGCCGGATGCGGCGTGAACGCCTTATCCGGCATGAAAACCCTTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTTCAAATGGCGCTGTAAAAg                                                                                     <  1:494897/143‑1 (MQ=255)                                                             tCAGGCAGGAGGCGGCGTGAACGCCTTATCCGGCATGAAAACCCTTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTTCAAATGGCGCTGTAAAAgg                                                                                    <  1:636744/143‑1 (MQ=255)                                                              cATGCGGTATGCTGCGTGTACGCCTTATCCGGTATGAAAACCCGTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGATAAGCGTAGCGCAGCAGGCAATGTTGCGTTTGTCATCAGTTTCAAATGGCGCTGTAAAAGGc                                                                                   <  2:982714/143‑1 (MQ=14)                                                                 gCCGGATGCGGCGTGAACGCCTTATCCGGCATGAAAACCCTTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATGAGTACCAAATGGCGCTGTAGAAGGCgcc                                                                                >  2:774514/1‑141 (MQ=255)                                                                  ccGGATGCGGCGTGAACGCCTTATCCGGCATGAAAACCCTTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGATAAGCGTCGCGCATCAGGCAACGTTGCGTTTGTCACCAGTATCAAATGACCCTGTACAAGGCATCa                                                                               >  2:796951/1‑143 (MQ=14)                                                                  ccGGATGCGGCGTGAACGCCTTATCCGGCATGAAAACCCTTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTTCAAATGGCGCTGTAAAAGGCGTCa                                                                               >  2:649424/1‑143 (MQ=255)                                                                     gATGCGGCGTGAACGCCTTATCCGGCATGAAAACCCTTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTTCAAATGGCGCTGTAAAAGGCGTCAttt                                                                            <  1:1082284/143‑1 (MQ=255)                                                                        ggggcgGGAGCGCGTTAGCGGGCATGCAAGCCCGTCAAAGCCAATAGATTGCAGTGAACGTGTAGGCCTGAGAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTTCAAATGGCGCTGTAAAAGGCGTCATTTTCa                                                                         <  2:583003/141‑1 (MQ=17)                                                                            cgTGAACGCCTTATCCGGCATGAAAACCCTTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGATgcgctacgcttatcagg                                                                                                                               >  2:840892‑M1/1‑68 (MQ=255)                                                                            cgTGAACGCCTTATCCGGCATGAAAACCCTTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGATgcgctacgcttatcagg                                                                                                                               <  1:840892‑M1/85‑18 (MQ=255)                                                                            cgTGAACGCCTTATCCGGCATGAAAACCCTTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTTCAAATGGCGCTGTCAAGGGCGTCATTTTcgtctt                                                                     >  1:319432/1‑138 (MQ=255)                                                                            cgTGAACGCCTTATCCGGCATGAAAACCCTTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGATAAGCGTAGCGCACCAGGCAATGTTGCGTTTGTCATCAGTTTCAAATGGCGCTGTAAAAGGCGTCATTTTCATAtt                                                                     <  2:753762/143‑1 (MQ=255)                                                                              tGAACGCCTTATCCGGCATGAAAACCCTTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGATAAGCGTAGCGCATCATGCAATGTTGCGTTTGTCATCAGTTTCAAATGGCGCTGTAAAAGGCGTCATTTTCATATTGt                                                                   <  1:660919/143‑1 (MQ=255)                                                                              tGAACGCCTTAGCCGGCATGAAAACCCTTCAAAGCCAATAGATTGCAGTGAACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTTCAAATGGCGCTGTAAAAGGCGTCATTTTCATATTGt                                                                   <  2:1094956/143‑1 (MQ=255)                                                                                 aCGCCTTATCCGGCATGAAAACCCTTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGATAAGCGTAGCGCatca                                                                                                                                 >  2:823370‑M2/1‑74 (MQ=255)                                                                                 aCGCCTTATCCGGCATGAAAACCCTTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGATAAGCGTAGCGCatca                                                                                                                                 <  1:823370‑M2/78‑5 (MQ=255)                                                                                         tCCGGCATGAAAACCCTTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTTCAAATGGCGCTGTAAAAGGCGTCATTTTCATATTGTAGACAACGTAg                                                        <  1:714539/143‑1 (MQ=255)                                                                                           cGGCATGAAAACCCTTCAAATCCAATGGATTGCAGTGAACGTGGAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTTCAAATGGCGCTGTAAAAGGCGTCATTTTCATATTGTAGACAACGTAGGc                                                      <  1:28646/143‑1 (MQ=255)                                                                                           cGGCATGAAAACCCATCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTTCAAATGGCGCTGTAAAAGGCGTCATTTTCATATTGTAGACAACGTAGGc                                                      <  1:22835/143‑1 (MQ=255)                                                                                                tacacccccTTCAAATCCAATAGATTGCAGTAAACGTGTAGGCTCTAGAAACGGAACGCAGCAGACAATGTCGTTTTTGTCATCAGTTTCAAATGGCGCTGTAAAAGGCGTCATTTTCATATTGTAGACAACGTAGGCTTTGt                                                 <  2:19268/137‑1 (MQ=21)                                                                                                 gAAAACCCTTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTTCAACTGGCGCTGTAAAAGGCGTCATTTTCATATTGTAGACAACGTAGGCTTTGtt                                                <  1:607886/143‑1 (MQ=255)                                                                                                  aaaaCCCTTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTTCAAATGGCGCTGTAAAAGGCGTCATTTTCCTATTGTAGTCCCCGTCGGCTTTGTTc                                               >  1:316619/1‑143 (MQ=18)                                                                                                        cgcgaaaGCCCATAGATCGCAGTGAAGGTGGAGGCCTGATAAGCTTAGGGCAGCAGGCAATGTTGCGTTTGTCATCAGGTTCAAATGGCGCTGTAAAAGGCGTCATTTTCATATTGTAGACAACGTAGGCTTTGTTCATGCCg                                         <  2:55832/139‑1 (MQ=25)                                                                                                          tCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTTCAAATGGCGCTGTAAAAGGCGTCATTTTCATATTGTAGACCACGTAGGCTTTGTTCATGCCGGa                                       >  1:534010/1‑143 (MQ=255)                                                                                                                ccAATAGATGGCAGTGAACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTTCAAATGGCGCTGTAAAAGGCGTCATTTTCATATTGTAGACAACGTAGGCTTTGTTCATGCCGGATgcggc                                 <  1:438603/143‑1 (MQ=255)                                                                                                                 cAATAGATTGCAGTGAACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTTCAAATGGCGCTGTAAAAGGCGTCATTTTCATATTGTACACAACGTAGGCTTTGTTCATGCCGGATgcggcg                                <  1:870596/143‑1 (MQ=255)                                                                                                                 cAATAGATTGCAGTGAACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTTCAAATGGCGCTGTAAAAGGCGTCA‑TTTCATATTGTAGACAACGTAGGCTTTGTTCATGCCGGATCCGGCGt                               >  1:1060524/1‑143 (MQ=255)                                                                                                                   aTAGATTGCAGTGAACGTGTAGGCCTGATAAGCGTAGCGCatcaggcctacacgttcactgcaatctattggatttgaagggtttaatgccggataaggcgtttgggtgccatccgtcatgaaccaaggctacggtgtctacc                              <  2:486419‑M2/143‑104 (MQ=255)                                                                                                                     aGATTGCAGTGAACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTTCAAATGGCGCTGTAAAAGGCGTCATTTTCATATTGTAGACAACGTAGGCTTTGTTCACGCCGCATCCGGCATGaa                            <  1:609505/143‑1 (MQ=25)                                                                                                                      gATTGCAGTGAACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTTCAAATGGCGCTGTAAAAGGCGTCATTTTCATATTGTAGACAACGTAGGCTTTGTTCATGCCGCATccggcat                               >  1:905239/1‑137 (MQ=255)                                                                                                                      gATTGCAGTGAACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTTCAAATGGCGCTGTAAAAGGCGTCATTTTCATATTGTAGACAACGTAGGCTTTGTTCATGCCGCATccggcat                               <  2:905239/139‑3 (MQ=255)                                                                                                                       agggCAGTGAACGAGTAGGCCTGAGAAGCGTAGGGCAGCAGGCAATGTTGCGTTAGTCATCAGTTTCAAATGGCGCTGTAAAAGGCGTCATTTTCATATTGTAGACAACGTAGGCTTTGTTCATGCCGGATGCGGCGTGAACg                          <  2:327624/140‑1 (MQ=21)                                                                                                                              tGAACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTTCAAATGGCGCTGTAAAAGGCGTCATTTTCATATTGTAGACAACGTAGGCTTTGTTCATGCAGGATGCGGCGTGAACGCCTTATc                   >  1:219193/1‑143 (MQ=255)                                                                                                                                aaCGTGTAGGCCTGATAGGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTTCAAATGGCGCTGTAAAAGGCGTCATTTTCATATTGTAGACAACGTAGGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCg                 <  1:789681/143‑1 (MQ=255)                                                                                                                                aaCGTGTAGGCCTGATAAGCGTAGCGCatcaggcctacacgttcactgcaatctattggatttgaagggttttcatgccggataaggcgttcacgccgcatccggcatgaacaaagcctacgttgtctacaatatgcacatga                 <  2:605864‑M2/143‑117 (MQ=255)                                                                                                                                   gtgtGGGCGTGGTAGGGGTAGGGCGTCAGCGAAGGTGGCGTTTGTCTTGAGCTTCAAATGGCGCTGTACAAGGCGTCATTTTCATATTGTAGACAACGTAGGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCa              <  2:261320/143‑1 (MQ=14)                                                                                                                                   gtgtAGGCCTGATAAGCGTAGCGCatcaggccgacacgttcactgcaatctattggatttgaagggttttcatgccggataaggcgttcacgccgcatccggcatgaacaaagcctacgttgtctacaatatgaaaatggcgc              <  2:578967‑M2/143‑120 (MQ=255)                                                                                                                                   gtgtAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTTCAAATGGCGCTGTAAAAGGCGTCATTTTCATATTGTAGACAACGTAGGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCa              <  1:649424/143‑1 (MQ=255)                                                                                                                                     gtAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTTCAAATGGCGCTGTAAAAGGCGTCATTTTCATATTGTAGACAAGGTAGGCTTTGTTCATGCCGGAGTCGGCGTGAACGGCTTATGCGGCATg            >  2:591092/1‑143 (MQ=25)                                                                                                                                         gCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTTCAAATGGCGCTGTAAAAGGCGTCATTTTCATATTGTAGACAACGTAGGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCATGaaca        >  1:12521/1‑141 (MQ=255)                                                                                                                                          ccTGATgcgctacgcttatcaggcctacacgttcactgcaatctattggatttgaagggttttcatgccggataaggcgttcacgccgcatccggcatgaaccaagcctacgttgtctacaatatgaaaatggcgccgtttac       >  2:629540‑M1/1‑6 (MQ=255)                                                                                                                                          ccTGATAAGCGTAGCGCatcaggcctacacgttcactgcaatctattggatttgaagggttttcatgccggataaggcgttcacg                                                                 <  1:840892‑M2/85‑69 (MQ=255)                                                                                                                                          ccTGATAAGCGTAGCGCatcaggcctacacgttcactgcaatctattggatttgaagggttttcatgccggataaggcgttcacg                                                                 >  2:840892‑M2/1‑17 (MQ=255)                                                                                                                                           cTGAGAAGCGTGGCGCATCAGGCAATGTCGCGTTTGGCATCAGTTTCAAATGGCGCTGTAAAAGGCGTCATTTTCATATTGTAGACAACGTAGGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCATGAAAAcc      <  1:27253/143‑1 (MQ=255)                                                                                                                                           cTGAGAAGCGTAGCGCAGCAGGCAATGTTGCGTTTGTCATCAGTTTCAAATGGCGCTGTAAAAGGCGTCATTTTCATATTGTAGACAACGTAGGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCATGAAAAcc      <  1:769363/143‑1 (MQ=255)                                                                                                                                            tGATgcgctacgcttatcaggcctacacgttcactgcaatctattggatttgaagggttttcatgccggataaggcgt                                                                      <  1:823370‑M1/78‑75 (MQ=255)                                                                                                                                            tGATgcgctacgcttatcaggcctacacgttcactgcaatctattggatttgaagggttttcatgccggataaggcgt                                                                      >  2:823370‑M1/1‑4 (MQ=255)                                                                                                                                            tGATAGGCGGAGCGCATCAGGCAATGTTGCGTTCGTCATCAGTTTCAAATGGCGCTGTACAAGGCGTCATTTTCATATTGTAGACAACGTAGGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCATGAAAAccc     <  1:1013406/143‑1 (MQ=255)                                                                                                                                            tGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTTCAAATGGCGCTGTAAAAGGCGTCATTTTCATATTGTAGACAACGTAGGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCATGAAAAccc     <  1:1013407/143‑1 (MQ=255)                                                                                                                                            tGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTTCAAATGGCGCTGTAAAAGGCGTCATTTTCATATTGTAGACAACGTAGGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCATGAAAAccc     <  1:1013403/143‑1 (MQ=255)                                                                                                                                            tGACgcgctacgcttagcaggcctacacgtgcactgcaatctaggggattggaagggtggtcatgccggataaggcgttcacgccgcatccggcatgaacaaagcctacgttggctacaatatgaaaatggcgccttttacag     <  2:804245‑M1/143‑140 (MQ=255)                                                                                                                                             gATgcgctacgcttatcaggcctacacgttcactgcaatctattggatttgaagggttttcatgccggataaggcgttcacgccgcatccggcatgaacaaagcctacgttgtctacaatatgaaaatggcgccttttacagc    <  1:734710‑M1/143‑141 (MQ=255)                                                                                                                                               tgcgctacgcttatcaggcctacacgttcactgcaatctattggatttgaagggttttcatgccggataaggcgttcacgccgcatccggcatgaacaaagcctacgttgtctacaatatgaaaatggcgccttttccagcgc  >  1:852237‑M1/1‑1 (MQ=255)                                                                                                                                               |                                                                                                                                               AAGCTGAAAATGGCGCTGTAAAAGGCGCCATTTTCATATTGTAGACAACGTAGGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCATGAAAACCCTTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTTCAAATGGCGCTGTAAAAGGCGTCATTTTCATATTGTAGACAACGTAGGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCATGAAAACCCTTC  >  NC_000913/1552007‑1552291

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.