New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 4542690	48 (0.850)	6 (0.110)	6/246	NT	11.4%	intergenic (+57/‑425)	fimE/fimA	regulator for fimA/type 1 fimbriae major subunit
	?	NC_000913	= 4542986	49 (0.930)					intergenic (+353/‑129)	fimE/fimA	regulator for fimA/type 1 fimbriae major subunit

CCGCCAGTAATGCTGCTCGTTTTGCCGGATTATGGGAAAGAAATAATCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGTTTGATATGTAAATTATTTCTATTGTAAATTAATTTCACATCACCTCCGCTATATGTAAAGCT  >  NC_000913/4542551‑4542832                                                                                                                                            |                                                                                                                                               tttaaaattaatgatacgttcctttcaaaaaactatttctaaatcgacaacaacagtcgttctgtacactttgttttgtaaacgagtttgactgccaacactgcacagttttcccccaaaagatgaaacatTTGGGGCCAAAc                                                                                                                                             >  2:482677‑M1/132‑143 (MQ=255) ccGCCAGTAATGCTGCTCGTTTTGCCGGATTATGGGAAAGAAATAATCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAAc                                                                                                                                             >  2:409546/1‑143 (MQ=255)  cGCCAGTAATGCTGCTCGTTTTGCCGGATTATGGGAAAGAAATAATCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACt                                                                                                                                            >  1:1069925/1‑143 (MQ=255)         aaTGCTGCTCGTTTTGCCGGATTATGGGAAAGAAATAATCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAttttgactcat                                                                                                                                     <  1:17792‑M1/143‑12 (MQ=255)          aTGCTGCTCGTTTTGCCGGATTATGGGAAAGAAATAATCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCatat                                                                                                                                    >  2:980751/1‑143 (MQ=255)           tgctgcTCGTGTCGACAGATTAAAGGAAAGAAATAATCTCATAAAAGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATc                                                                                                                                   <  2:566487/143‑1 (MQ=255)           atgctgctttcctttcaaaaaactatttctaaatcgacatgggcagtcgttctgtacactttgttttgtaaacgagtttgactgccaacactgcacagccttcccccacacgatgacacatCTGGGGCCAAACTgtccacgtc                                                                                                                                   <  2:843038‑M1/22‑5 (MQ=255)              tgctCGTTTTGCCGGATTATGGGAAAGAAATAATCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACACGACAATAGGGGCCAAACTGTCCATATCata                                                                                                                                >  2:719339/1‑143 (MQ=255)              tgctCGTTTTGCCGGATTATGGGAAAGAAATAATCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAttttgactcatagagg                                                                                                                                >  2:1013326‑M1/1‑127 (MQ=255)                   cgtttGCTGGAGTAAGGGAAGAAAAGAATGTCAAAAGCGAAAAACAAAAAAGAGAAGAGGTTTGAGTTAACTAATAGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCataaataa                                                                                                                           <  2:707363/141‑1 (MQ=255)                     tttGCCGGATTATGGGAAAGAAATAATCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCCAACTGTCCATATCataaacacgt                                                                                                                         >  1:387112/1‑138 (MQ=255)                     tttGCCGGATTATGGGAAAGAAATAATCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAttttgactcatagaggaaagcat                                                                                                                         <  1:832338‑M1/143‑24 (MQ=255)                      ttGCCGGAATATGGGAAAGAAATAATCTCATGAACGAAAAATTAAAAAGAGAAGAGGTTTGAGTTAACTGATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAACCTGTCCATATCATAAATAAGtt                                                                                                                        <  1:948951/143‑1 (MQ=255)                        gCCGTATTATGGGAAAGAAATAATCGCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTAc                                                                                                                      <  1:955614/143‑1 (MQ=255)                         ccGGATTATGGGAAAGAAATAATCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACg                                                                                                                     >  2:634135/1‑143 (MQ=255)                         ccGGATTATGGGAAAGAAATAATCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACg                                                                                                                     >  1:192500/1‑143 (MQ=255)                         ccGGATTATGGGAAAGAAATAATCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACg                                                                                                                     >  2:1054081/1‑143 (MQ=255)                                  tatttctaaatcgacatgggcagtcgttctgtacactttgttttgtaaacgagtttgactgccaacactgcacagttttcccccaaaagatgaaacatTTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTtc                                                                                                            <  1:940164‑M1/45‑1 (MQ=255)                                   ggAAAGAAATAATCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTtct                                                                                                           >  1:385940/1‑143 (MQ=255)                                     aaaggaaTAATCTCATAAACGACCAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAttttgactcatagaggaaagcatcgcggacaaacttttt                                                                                                         <  2:824626‑M1/143‑40 (MQ=255)                                       agaaaTAATCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAg                                                                                                       >  2:590177/1‑143 (MQ=255)                                          aataatCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCAt                                                                                                    >  1:920811/1‑143 (MQ=255)                                             aatGTCATAAACGAAAAAATAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATaaa                                                                                                 <  2:841206/143‑1 (MQ=255)                                               acatgggcagtcgttctgtacactttgttttgtaaacgagtttgactgccaacaccgcacagttttcccccaaaagatgaaacatTTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATaaaaa                                                                                               >  1:965808‑M1/86‑143 (MQ=255)                                                 atggccagtcgttctgtacactttgttttgtaaacgagtttgactgccaacactgcacagttttcccccaaaagatgaaacatTTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAata                                                                                             >  2:377934‑M1/84‑143 (MQ=255)                                                      cagtcgttctgtacactttgttttgcaaacgagtgtgaccgcctacactgcaaagtttccccccagaagatgaaacatTTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTaaa                                                                                        >  2:385966‑M1/79‑143 (MQ=255)                                                      aaCAAAAAAGTAAAAAGAGAAGACGTGTAATTAAACTTATTGATAATAAAGTGAAAAAAACAAATAAATACAATACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTaaa                                                                                        <  2:99027/143‑1 (MQ=255)                                                          aaaaaTTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAAc                                                                                    >  2:966056/1‑143 (MQ=255)                                                            acatcaaaaaGAGACGAGTTTTGATTTCACTCATTGAGAATAAAGTTAAAAAAACAAATAAATCAAAGTGTGTTGGTTCCAAACTGTCCATTTCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGa                                                                                  <  1:635604/138‑1 (MQ=255)                                                                 tacactttgttttgtaaacgagtttgactgccaacactgcacagttttcccccaaaagatgaaacatTTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGacaaca                                                                             <  1:796508‑M1/76‑3 (MQ=255)                                                                   cactttgttttgtaaacgagtttgactgccaacactgcacagttttcccccaaaagatgaaacatTTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAg                                                                           <  1:795610‑M1/78‑1 (MQ=255)                                                                    aagagaagagGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCACGCATAAAAATATTAAAAAACGACAAAAAGc                                                                          >  1:436948/1‑143 (MQ=255)                                                                    aagagaagagGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAACAATATTAAAAAACGACAAAAAGc                                                                          >  2:633525/1‑143 (MQ=255)                                                                     agagaatagGTTTGAGTTAACTGATTGATAATAAAGGTAAAAAAACAAATAAATACAAGACAATTGGGGCCAttttgactcatagaggaaagcatcgcggacaaactttttcagtttatttgttggcttaatattctattgtt                                                                         <  2:103870‑M1/143‑72 (MQ=255)                                                                        gaagagGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCt                                                                      <  1:590177/143‑1 (MQ=255)                                                                          ttttgtaaacgagtttgactgccaacactgcacagttttcccccaaaagatgaaacatTTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTaa                                                                    <  2:247123‑M1/85‑1 (MQ=255)                                                                           gagGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAGAGCGTCtgtc                                                                   >  1:978008/1‑140 (MQ=255)                                                                              gTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATACAAATATTAAAAAACGACAAAAAGCATCTCACTGt                                                                >  2:625206/1‑143 (MQ=255)                                                                              gTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAATCATCTAACTgc                                                                >  2:258167/1‑142 (MQ=255)                                                                               tttGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGtt                                                               <  1:166381/143‑1 (MQ=255)                                                                               tttGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGtt                                                               >  1:727742/1‑143 (MQ=255)                                                                                ctgacatAACTTAGTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGttt                                                              <  1:145111/137‑1 (MQ=255)                                                                                    tttAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGTTTGata                                                          <  1:544913/143‑1 (MQ=255)                                                                                      tAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGTTTGATATg                                                        >  1:795229/1‑143 (MQ=255)                                                                                         cTTATTGATAATAAAGTTAAAAAAACAAACAAATCCAAGACCATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGTTTGATATGTaa                                                     <  1:203752/143‑1 (MQ=255)                                                                                          ttATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACAGTCCATATCATAAATAAGTTACGTATTCATTCTCAAGCATAAAAATATTAAAAAACGAACAAAAGCATCTAACTGTTTGAAATGTaaa                                                    >  2:736845/1‑143 (MQ=255)                                                                                          ttATTGATAATAAAGTTAAAAAAACAAATAAAAACAAGACAATTGGGACCAAACTGACCATATCATAAATAAGTTACGTATTTTTTCTCAAGCCTAAAAATATTAAAAAACGACAAAAAGCATCTAACTGTTTGATGTGTaaa                                                    >  1:723570/1‑143 (MQ=255)                                                                                          atagtGATAATAAAGTTAAAAAAAAAAAAAAATGCAAGACAATTGGGGCCAAACTGTCCATATAATAAATAAGTTACGTACTTTTTCTCAAGAAAAAAAAAAAAAAAAAACGACAAAAAGCATCTAACTGTTTGATATGTaaa                                                    <  2:372638/139‑1 (MQ=255)                                                                                            ctgccaacactgcacagttttcccccaaaagatgaaacatTTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGTTTGATATGTAAatt                                                  <  1:234151‑M1/103‑1 (MQ=255)                                                                                               gATAATAAAGGTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGTTTGATATGTAAattatt                                               <  2:800350/143‑1 (MQ=255)                                                                                                ataataAAGTTAAAAAAACAAATAAATACCAGACAATTGCCGCCAttttgactcatcgaggaaagcatcgcggacaaactttttcagtttatttgttggcttaatattctattgttatctttatttatagatgtttatattgc                                              <  1:215919‑M1/143‑99 (MQ=255)                                                                                                ataataAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGTTTGATAAGTAAATTAttt                                              <  2:277899/143‑1 (MQ=255)                                                                                                ataataAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTGACGTATTTTTTCTCAAGCATAAAAATCTTAAACAACGACAAAAAGAATCCAACCGTTGGATATGTAAATTAttt                                              >  1:463536/1‑143 (MQ=255)                                                                                                 aacactgcacagttttcccccaaaagatgaaacatTTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTTTCGCACGACATAAAGCATCAGACTGTTTGATATGTAAATTATTTc                                             <  1:1092989‑M1/108‑1 (MQ=255)                                                                                                      aaGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTGCAGATTAAGAATATTAAAAAACGACAAAAAGCATCTAACTGTTTGATATGTAAATTATTTCTATTg                                        >  1:254491/1‑143 (MQ=255)                                                                                                       aGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCTAGCATAAAAATATTAAAAAACGACAAAAAGCATCTCACTGTTTGATATGTAAATTATTTCTATTGt                                       >  2:868358/1‑143 (MQ=255)                                                                                                       aGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGGATATAACTGTTTGATATGTAAATTATGTCTATTGt                                       >  1:764412/1‑143 (MQ=255)                                                                                                       aGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGTTTGATATGTAAATTATTTCTATTGt                                       >  1:764811/1‑143 (MQ=255)                                                                                                         ttAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAACAGCGAAAAAGCATCTACCGGTTTGATAGGTCAATTATGTCTATTGTaa                                     >  1:249239/1‑143 (MQ=255)                                                                                                           aaaaaaaCAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGTTTGATATGTAAATTATTTCTAATGTAaat                                   >  2:1747/1‑143 (MQ=255)                                                                                                           aaaaaaaCAAATAAATACAAGACAATTGGAGCCAAACTATACATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGTTTGATATGTAAATTATTTCTATTGTAaat                                   <  2:721916/143‑1 (MQ=255)                                                                                                             aaaaaCAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGTTTGATATGTAAATTATTTCTATTGTAaatta                                 >  2:208141/1‑143 (MQ=255)                                                                                                                 aCAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGTTTGATATGTAAATTATTTCTATTGTAAATTAAttt                             <  1:833381/143‑1 (MQ=255)                                                                                                                   aaataaatACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGTTTGATATGTAAATTATTTCTATTGTAAATTAATTTca                           >  1:688933/1‑143 (MQ=255)                                                                                                                         agatgaaacatTTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGTTTGATATGTAAATTATTTCTATTGTAAATTAATTTCACATCAc                     >  2:374641‑M1/12‑143 (MQ=255)                                                                                                                                 cAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGTTTGATATGTAAATTATTTCTATTGTAAATTAATTTCACATCACCTCCGCta             <  1:1026566/143‑1 (MQ=255)                                                                                                                                  aaTTGGGGCCAAACTGTCCATATCATAAATAAGTTCCGTCATATCTCACAAGCATTTGTTTAATAAAAAACGACAAAAAGCATCAAACTGTTTGATATGTAAATTATGTCTATTGTAAATTAATTTCACATCACCTCCGCtat            <  1:984604/143‑1 (MQ=255)                                                                                                                                    TTGTGGCCAAATTGTCCATATCATAAATAAGTTACGTTTTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGTTTTATATGTAAATTATTTCTATTGTAAATTAATTTCACATCACCTCCGCTatat          >  2:582359‑M1/1‑143 (MQ=255)                                                                                                                                    TTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAACAATATTAAAAAACGACAAAAAGCATCTAACTGTTTGATATGTAAATTATTTCTATTGTAAATTAATTTCACATCACCTCCGCTatat          >  2:387112‑M1/1‑143 (MQ=255)                                                                                                                                       gggCCAttttgactcatagaggaaagcatcgcggacaaactttttcagtttatttgttggcttaatattctattgttatctttatttatagatgtttatattgcatgaggtggtttttggagagaagaatgaggaagatgcgt       <  1:431125‑M1/143‑138 (MQ=255)                                                                                                                                       gggCCAAACTGTCCATAGCATAAGTAAGTTACGTATTGTTTCTCAAGGATAAAAATATTAAAAAAGAAAAAAAAGCATCTAACTGTTTGATATGTAAATTAATTATATTGTCAATTAATGTCAGAGCACCGCCGCTACATGTa       >  2:98263/1‑143 (MQ=255)                                                                                                                                        ggCCAttttgactcatagaggaaagcatcgcggacaaactttttcagtttatttgttggcttaatattctattgttatctttatttatagatgtttatattgcatgaggtggtttttggagagcagaatgaggaagatgcgtc      >  1:843038‑M1/1‑5 (MQ=255)                                                                                                                                        GGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGTTTGATATGTAAATTATTTCTATTGTAAATTAATTTCACATCACCTCCGCTATATGTaa      <  1:1004505‑M1/143‑1 (MQ=255)                                                                                                                                          CCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGTTTGATATGTAAATTATTTCTATTGTAAATTAATTTCACATCACCTCCGCTATATGTAAAg    >  1:279384‑M1/1‑143 (MQ=255)                                                                                                                                           CAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGTTTGATATGTAAATTATTTCTATTGTAAATTAATTTCACATCACCCCCGCTATATGTAAAGc   <  2:257278‑M1/143‑1 (MQ=255)                                                                                                                                            AAACTGTCCATATCATGAATAAGTAAGGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCGTCTAACTGTTTGATATGTAAATTATTTCTATTGTAAATTAATTTCACATCACCTCCGCTATATGTAAAGCt  >  2:1012662‑M1/1‑143 (MQ=255)                                                                                                                                            |                                                                                                                                               CCGCCAGTAATGCTGCTCGTTTTGCCGGATTATGGGAAAGAAATAATCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGTTTGATATGTAAATTATTTCTATTGTAAATTAATTTCACATCACCTCCGCTATATGTAAAGCT  >  NC_000913/4542551‑4542832

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.