BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	566777 =	NA (NA)	2580 (46.110)	258/262	NT	98.0%	noncoding (1/1258 nt)	IS3	repeat region
*	?	NC_000913	= 572471	54 (0.960)	2580 (46.110)	258/262	NT	98.0%	coding (6/456 nt)	ybcN	DLP12 prophage; DNA base‑flipping protein

Only 100 of 2925 total aligned reads displayed.

GAACAACTCCGGTGACTTCTGCGCTAAACGGGGACGTTTATGCGCACATACAATCCAAACTCTCTTCTCCCTTCACAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACCTCTCACAAGACGGCATCAAATTACATCGCGGCAACTTCACCGCTATCGGTCGGCAGATCCAGCCTTATCTGGAGGAGGGCAAATGCTTTCGCATGGTGCTTAAACCGTGGCGTGAGAAACGCAGTCTTTCCCAGAATGCA  >  NC_000913/572329‑572612

gAACAACTCCGGTGACTTCTGCGCTAAACGGGGACGTTTATGCGCACTTACAATCCAAACTCTCTTCTCCCTTCACAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGGGAAC                                                                                                                                               <  1:1055768‑M2/143‑1 (MQ=255)

 aacaacTCCGGTGACTTCTGCGCTAAACGGGGACGTTTATGCGCACATACAATCCAAACTCTCTTCTCCCTTCACAGATGCAGAAATGCACCTGCGATGCTTTGCATCTAGCGTTTGACCTCTGTGGAGGGGAAGCGTGAACt                                                                                                                                              <  2:722148‑M2/143‑2 (MQ=255)

  ccaactCCGGTGACTTCTGCGCTAAACGGGGACGTTTATGCGCACATACAATCCAATCTCTCTTCTCCCTTCACAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACtg                                                                                                                                             >  2:210439‑M2/2‑141 (MQ=255)

     acTCCGGTGACTTCTGCGCTAAACGGGGACGTTTATGCGCACATACAATCCAAACTCTCTTCTCCCTTCACAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACtgatc                                                                                                                                          >  1:701007‑M2/1‑138 (MQ=255)

       tCCGGTGACTTCTGCGCTAAACGGGGACGTTTATGCGCACATACAATCCAAACTCTCTTCTCCCTTCACAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACtgatcgt                                                                                                                                        <  2:334483‑M2/143‑8 (MQ=255)

        ccGGTGACTTCTGCGCTAAACGGGGACGTTTATGCGCACATACAATCCAAACTCTCTTCTCCCTTCACAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACtgatctta                                                                                                                                       >  1:240677‑M2/1‑135 (MQ=255)

           gTGACTTCTGCGCTAAACGGGGACGTTTATGCGCACATACAATCCAAACTCTCTTCTCCCTTCACAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACtgatcttaccc                                                                                                                                    <  1:665172‑M2/143‑12 (MQ=255)

            tGACTTCTGCGCTAAGCGGGGACGTTTATGCGCACATACAATCCAAACTCTCTTCTCCCTTCACAGATGCAGCAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACtgatcttaccca                                                                                                                                   >  2:603363‑M2/1‑131 (MQ=255)

                ttCTGCGCTAAACGGGGACGTTTATGCGCACATACAATCCAAACTCTCTTCTCCCTTCACAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACtgatcttacccagcaa                                                                                                                               <  2:463155‑M2/143‑17 (MQ=255)

                 tCTGCGCTAAACGGGGACGTTTATGCGCACATACAATCCAAACTCTCTTCTCCCTTCACAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACtgatcttacccagcaat                                                                                                                              <  1:849829‑M2/143‑18 (MQ=255)

                    gcgcTAAGCGGGGACGTTTATGCGCACATACAATCCAAACTCTCTTCTCCCTTCACAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACtgatcttacccagcaatagt                                                                                                                           >  2:1082651‑M2/1‑123 (MQ=255)

                    gcgcTAAACGGGGACGTTTATGCGCACATACAATCCAAACTCTCTTCTCCCTTCACAGATGTAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACtgatcttacccagcaatagt                                                                                                                           >  1:975167‑M2/1‑123 (MQ=255)

                    ccgctGAACTGGGACGTGTATGCGCACATAGAATCCAACCTCTCTTCTCCCTTCACAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTGGACCTCTGCGGAGGGGAAGCGTGAACtgatcttacccagcaatagt                                                                                                                           >  2:1054617‑M2/2‑123 (MQ=255)

                     cgcTACACGGGGACGTTTATGCGCACATACAATCCAAGCTCTCTTCTCCCCTCACAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGCCGGGGAAGCGTGAACtgatcttacccagcaatagtg                                                                                                                          >  2:1025578‑M2/1‑122 (MQ=255)

                     cgcTAAACGGGGACGTTTATGCGCACATACAATCCAAACTCTCTTCTCCCTTCACAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACtgatct                                                                                                                                         >  1:1038421‑M2/1‑122 (MQ=255)

                       cTAAACGGGGACGTTTATGCGCACATACAATCCAAACTCTCTTCTCCCTTCACAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACtgatcttacccagcaatagtgga                                                                                                                        >  1:916121‑M2/1‑120 (MQ=255)

                          aaCGGGGACGTTTATGCGCACATACAATCCAAACTCTCTTCTCCCTTCACAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACtgatcttaccgagcaatagtgaccaa                                                                                                                     <  1:197081‑M2/143‑27 (MQ=255)

                          aaCGGGGACGTTTATGCGCACATACAATCCAAACTCTCTTCTCCCTGCACAGATGCAGGAATGCACCTGCAATTGTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACtgatcttacccagcaatagtggacac                                                                                                                     <  1:137481‑M2/143‑27 (MQ=255)

                                  cGTTTATGCGAACATACAATCCAAACTCTCTTCTCCCTTCACAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACtgatcttacccagcaatagtggacacgcggctaa                                                                                                             >  1:685246‑M2/1‑109 (MQ=255)

                                   gTTTATGCGCACATACAATCCAAACTCTCTTCTCCCTTCACAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGGAGCGTGAACtgatcttacccagcaatagtagacacgcggctacg                                                                                                            <  1:422210‑M2/143‑36 (MQ=255)

                                    tttATGCGCACATACAATCCAAACTCTCTTCTCCCTTCACAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACtgatcttacccagcaatagtggacacgcggctaagt                                                                                                           >  1:367744‑M2/1‑107 (MQ=255)

                                      tATGTGAACATTCAAGCCAGCCGCTCTTCGCTCGTGACAGATGCAGAAATGCACCTGCAGTGCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACtgatcttacccagcaatagtggacacgcggctaagtga                                                                                                         >  2:830775‑M2/1‑105 (MQ=255)

                                      tATGCGCACCACCAACCCAAACTCTCTTCTCCCTGCACAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACtgatcttacccagcaatagtggacacgcggctaagtga                                                                                                         >  2:584131‑M2/1‑105 (MQ=255)

                                      tATGCGCACATACAATCCAAACTCTCTTCTCCCTTCACAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACtgatcttacccagcaatcgtggacacgcggctaagtga                                                                                                         <  2:504092‑M2/143‑39 (MQ=255)

                                         gcgcACATACAATCCAAACTCTCTTCTCCCTTCACAGATGCAGAAATGCACCTGCACTTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGACCCGTGAACtgatcttacccagcaatagtggacccgcggcgaagtgagta                                                                                                      <  1:1095683‑M2/143‑42 (MQ=255)

                                           gcACATACAATCCAAACTCTCTTCTCCCTTCACAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGGCCTATCCGTAGAGGAAGCGTGAACtgatcttacccagcaatagtggacacgcggataagtgagtaaa                                                                                                    <  2:128507‑M2/143‑44 (MQ=255)

                                           gcACATACAATCCAAACTCTCTTCTCCCTTCACAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACtgatcttacccagcaatagtggacacgcggctaagtgagtaaa                                                                                                    <  1:487137‑M2/143‑44 (MQ=255)

                                           gcACATACAATCCAAACTCTCTTCTCCCTTCACAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACtgatcttacccagcaatagtggacacgcggctaagtgagtaaa                                                                                                    >  1:1071476‑M2/1‑100 (MQ=255)

                                             acaTACGATCCAAACTCTCTTCTCCCTTCACAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACtgatcttacccagcaatagtggacacgcggctaagtgagtaaact                                                                                                  >  2:681954‑M2/1‑98 (MQ=255)

                                               aTACAATCCAAACTCTCTTCTCCCTTCTCAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCAGAGGGGAAGCGTGAACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactct                                                                                                >  2:404445‑M2/1‑96 (MQ=255)

                                               aTACAATCCAAACTCTCTTCTCCCTTCACAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactct                                                                                                >  1:770432‑M2/1‑96 (MQ=255)

                                                caccctccaacCTCTCTTCTCCCTTCACAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCGGCGGAGGGGAAGCGTGAACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctc                                                                                               >  2:88680‑M2/6‑95 (MQ=255)

                                                 aCTATCCCAACCCTCTCCTCCCTTCACAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctca                                                                                              >  1:597606‑M2/1‑94 (MQ=255)

                                                 aCAATCCAAACTCTCTTCTCCCTTCACAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctca                                                                                              >  1:726181‑M2/1‑94 (MQ=255)

                                                     tCCAAACTCTCTTCTCCCTTCACAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACtgatcttacccagcaatagtggacacgcggctaagtgagtagactcccagtca                                                                                          <  2:306702‑M2/143‑54 (MQ=255)

                                                      ccAAACTCTCTTCTCCCTTCACAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcag                                                                                         <  1:937288‑M2/143‑55 (MQ=255)

                                                        aaaCTCTCTTCTCCCTTCACAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagag                                                                                       <  2:803796‑M2/143‑57 (MQ=255)

                                                        aaaCTCTCTTCTCCCTTCACAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGATTGACGTGTGCGGAGGGGAAGCGTGAACtgaacttacccagcaatagtggacacgcggctgagtgaggaaacgcgcagtcagag                                                                                       <  2:914548‑M2/143‑57 (MQ=255)

                                                        aaaCTCTCTGCTCCCGTCACAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagag                                                                                       >  1:1000806‑M2/1‑87 (MQ=255)

                                                          aCTCTCTTCTCCCTTCACAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagaggt                                                                                     >  1:75315‑M2/1‑85 (MQ=255)

                                                                ttctCCCTTCACAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagaggtgactca                                                                               <  1:565740‑M2/143‑65 (MQ=255)

                                                                 tctcCCGTCACAGAGTCAGAAGTGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACttatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagaggtgactcac                                                                              >  2:867062‑M2/1‑78 (MQ=255)

                                                                  cccccctcACAGATGCATAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACtgatcttacccagcaatagtggacacgcggctaagtgagtcacctctgactgagagtttactcact                                                                             <  2:982712‑M1/141‑67 (MQ=255)

                                                                   tcCCTTCACAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAGGCGTGAACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagaggtgactcacat                                                                            <  1:101966‑M2/143‑68 (MQ=255)

                                                                    cccTTCACAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagaggtgactcacatg                                                                           <  1:386340‑M2/143‑69 (MQ=255)

                                                                     ccTTCACAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACtgatcttacccagcagtagtggacacgcggctaagtgagtaaactctccgtcagaggtgactcacatga                                                                          <  2:25114‑M2/143‑70 (MQ=255)

                                                                      cTTCACAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagaggtgactcacatgac                                                                         <  1:892872‑M2/143‑71 (MQ=255)

                                                                      cTTCACAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagaggtgactcacatgac                                                                         <  1:649094‑M2/143‑71 (MQ=255)

                                                                          acaGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACtgatcttacccagcaaccgtggacacgcggctagggcactaaacccccagtccgaggtgactcacatgacacaa                                                                     <  2:229037‑M2/143‑75 (MQ=255)

                                                                           caGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagaggtgactcacatgacaaaaa                                                                    >  2:701960‑M2/1‑68 (MQ=255)

                                                                           caGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagaggtgactcacatgacaaaaa                                                                    <  2:626031‑M2/143‑76 (MQ=255)

                                                                           caGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACCTCTCACAAGACGGCATCAAATTACATCGCGGCAACTTCACCGCTATCGGTCGGCAGATCCAGCCTTATCTggag                                                                    <  1:272971/143‑1 (MQ=255)

                                                                            tgaTGCAGGAATGCACCTGCAAGTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagaggtgactcacatgacaaaaac                                                                   >  2:150779‑M2/2‑67 (MQ=255)

                                                                             gATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagaggtgactcacatgacaaaaaca                                                                  >  1:290796‑M2/1‑66 (MQ=255)

                                                                              actcaggACTGCCCCTGCCATTCTTTGCATCCAGCGTTTCACCTCTGCGGAGGAGAAGCGTGAACtgatcttacccagcaatagtggacacgcggctaagtgagtaaacgctcagtcagaggtgactcacatgacaaaaacag                                                                 >  2:48714‑M2/4‑65 (MQ=255)

                                                                              aTGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagaggtgactcacatgacacaaccag                                                                 <  1:351516‑M2/143‑79 (MQ=255)

                                                                               tGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagaggtgactcacatgacaaaaacagt                                                                >  1:739460‑M2/1‑64 (MQ=255)

                                                                                gCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagaggtgactcacatgacaaaaacagta                                                               <  1:992547‑M2/143‑81 (MQ=255)

                                                                                gCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagaggtgactcacatgacaaaaacagta                                                               >  1:309713‑M2/1‑63 (MQ=255)

                                                                                gCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagaggtgactcacatgacaaaaacagta                                                               >  1:872420‑M2/1‑63 (MQ=255)

                                                                                  aGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACtgatcttacccagcattattggacacgcggctaagtgagtaaactctcagtcagaggtgactcacatgacaaaaacagtatc                                                             >  1:155779‑M2/1‑61 (MQ=255)

                                                                                  aGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagaggtgactcacatgacaaaaacagtatc                                                             <  1:51012‑M2/143‑83 (MQ=255)

                                                                                  aGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagaggtgactcacatgacaaaaacagtatc                                                             >  1:258896‑M2/1‑61 (MQ=255)

                                                                                     aaTGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagaggtgactcacatgacaaaaacagtatcaac                                                          >  2:745400‑M2/1‑58 (MQ=255)

                                                                                       tGCACCTGCAATTCTGTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagaggtgactcacatgacaaaaacagtatcaacca                                                        <  2:934531‑M2/143‑88 (MQ=255)

                                                                                        gCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagaggtgactcacatgacaaaaacagtatcaaccag                                                       <  1:332081‑M2/143‑89 (MQ=255)

                                                                                          aCCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcggtcagaggtgactcacatgacaaaaacagtatcaaccagta                                                     <  1:579970‑M2/143‑91 (MQ=255)

                                                                                           ccTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagaggtgactcacatgacaaaaacagtatcaaccagtaa                                                    >  1:402043‑M2/1‑52 (MQ=255)

                                                                                             tGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACtgatcttacccagcactagtgggcacgcggctaagtgagtaacctctcagtcagaggtgactcacacgacaaaaacagtatcaccaagtaaaa                                                  <  2:191234‑M2/143‑94 (MQ=255)

                                                                                               cAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagaggtgactcacatgacaaaaacagtatcaaccagtaaaaaa                                                >  1:213608‑M2/1‑48 (MQ=255)

                                                                                               cAATGCTGTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagaggtgactcacatgacaaaaacagtatcaaccagtaaaaaa                                                >  2:1007344‑M2/1‑48 (MQ=255)

                                                                                                aaTTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagaggtgactcacatgacaaaaacagtatcaaccagtaaaaaac                                               >  1:11936‑M2/1‑47 (MQ=255)

                                                                                                    cTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagaggtgactcacatgacaaaaacagtatcaaccagtaaaaaaccccg                                           <  2:423965‑M2/143‑101 (MQ=255)

                                                                                                    cTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagaggtgactcacatgacaaaaacagtatcaaccagtaaaaaaccccg                                           >  1:442424‑M2/1‑43 (MQ=255)

                                                                                                    cTTTGCATCTAGCGGTTGACCTCTGCGGAGGGGAAGCGTGAACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagaggtgactcacatgacaaaaacagtatcaaccagtaaaaaaccccg                                           >  1:828577‑M2/1‑43 (MQ=255)

                                                                                                          aTCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagaggtgactcacatgacaaaaacagtatcaaccagtaaaaaaccccgtaaaca                                     >  1:545288‑M2/1‑37 (MQ=255)

                                                                                                           tCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagaggtgacgcacatgccaaaaacagtatcaacccgtaaaaaacaccgtcaacag                                    <  2:849644‑M2/143‑108 (MQ=255)

                                                                                                            cTAGCGTTGGACCGATGCGGAGGGGAAGCGTGAAAtgatcttgcccagcaatagtggacacgcagctaagtgagtaaactctcagtcagaggtgactcacatgacaaaaacagtatcaaccagtaaaaatccccgtaaacagc                                   >  2:356108‑M2/1‑35 (MQ=255)

                                                                                                              aGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagaggtgactcacatgacaaaaacagtatcaaccagaaaaaaaccccgtaaacagcat                                 <  2:274905‑M2/143‑111 (MQ=255)

                                                                                                               gCGTTTGACCTCTGCGGAGGGGAAGCGTGAACtgagcttacccaccaatagtggacacgcggctaagtgagtaaactctcagccagaggtgactcacaacacaaaaacagtatcgaccagtcacaaaccccgcaaccagcagc                                <  2:64809‑M2/143‑112 (MQ=255)

                                                                                                                 gTTTGACCTCTGCGGAGGGGAAGCGTGAACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagaggtgactcacatgacaaaaacagtatcaaccagtaaaaaaccccgtaaacagcattcg                              <  2:7870‑M2/143‑114 (MQ=255)

                                                                                                                    tGACCTCTGCGGAGGGGAAGCATGAACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagacgtgactcacatgacactaacactatcaaccagtaaaaaaccccgtaaacagcattcgcct                           >  2:381502‑M2/1‑27 (MQ=255)

                                                                                                                       ccTCTGCGGAGGGGAAGCGTGAACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagaggtgactcacatgacaaaaacagtatcaaccagtaaaaaaccccgtaaacagcattcgcctgaa                        >  1:630038‑M2/1‑24 (MQ=255)

                                                                                                                        ctctGCGGAGGGGAAGCGTGAACtgatcttacccagcactagtggacacgcggctaagtgagtaaactctcagtcagaggtgactcacatgacaaaaacagtatcaaccagtaaaaaaccccgtaagcagccttcgccggaat                       <  2:554288‑M2/143‑121 (MQ=255)

                                                                                                                        ctctGCGGAGGGGAAGCGTGAACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagaggtgactcacatgacaaaaacagtatcacccagtataacaccccgtaaacagcattcgcctgaat                       <  1:176421‑M2/143‑121 (MQ=255)

                                                                                                                         tctGCGGAGGGGAGGCGTGAACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagaggtgactcacatgacaaaaacagtcgcaaccagtaaaaaaccccgtaaacagcatgcgcatgaatt                      <  2:763763‑M2/143‑122 (MQ=255)

                                                                                                                         tctGCGGAGGGGAAGCGTGAACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagaggtgactcacatgacaaaaacagtatcaaccagtaaaaaaccccgtaaacagcattcgcctgaatt                      <  1:959183‑M2/143‑122 (MQ=255)

                                                                                                                          ctGCGGAGGGGAAGCGTGAACtgatcttacccagcaatagtggacacgcggctacgtcagtaaactctcagtccgaggtgactcacatgacaaaaacagtatcaacccgcaaaaaaccccgtaaacagaattcgcatgacatt                     <  2:1107441‑M2/143‑123 (MQ=255)

                                                                                                                          ctGCGGAGGGGAAGCGTGAACtgatcttacccagcaatagtggacacacggctaagtgagtaaactctcagtcagaggtgactcacatgacaagaacagtatcaaccagtaaaaaaccccgtaaacagcattcgcctgaattt                     >  1:791437‑M2/1‑21 (MQ=255)

                                                                                                                           cgcGGAGGGGAAGCGTGAACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagatgtgactcacatgacaaaaacagtatcaaccagtaaaaaaccccgtaaacagcattcgcctgaatttc                    >  2:566949‑M2/2‑20 (MQ=255)

                                                                                                                            gCGGAGGGGAAGCGTGATCtgttcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagaggtgactcacatgacaaaaacagtatcaaccagtaaaaatcctcgtaaatagcattcgcctgaatttcg                   >  2:290837‑M2/1‑19 (MQ=255)

                                                                                                                             cGGAGGGGAAGCGTGAACtgatcttacccagcaatagtggacacgcggctaaatgagtaaactctcagtcagaggtgactaacatgacaaaaacagtatcaaccagtaaaaaaccccgtaaacagcattcgcctgaagttcgc                  <  1:5309‑M2/143‑126 (MQ=255)

                                                                                                                              ggAGGGGAAGCGTGAACggatcgtacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagaggtgactcacatgacaaaaacagtatcaaccagtaaaacaccccgtaaacagcattcgcctgaatttcgca                 >  2:167323‑M2/1‑17 (MQ=255)

                                                                                                                                  gggAAGCGTGAACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagaggtgactcacatgacaaaaacagtatcaaccagtaaaaaaccccgtaaacagcattcgcctgaatttcgcagtga             >  2:662458‑M2/1‑13 (MQ=255)

                                                                                                                                    taagCGTGAACttatcttacccagctattgttgacacgcggctaagtgagtaaactctcagtcagaggtgactcacatgacaaaaacagtatcaaccagtaaaaatccccgtaaacagcattcgcctgaatttcgcagtgaag           >  2:529014‑M2/2‑11 (MQ=255)

                                                                                                                                    gAAGCGTGAACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcatagatgacacacatgacaaaaacagtatcaaccagtaaaaaaccccgccaaacgcaatcgcctgaaattcgcagagaac           <  2:443484‑M2/143‑133 (MQ=255)

                                                                                                                                    gAAGCGTGAACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagaggtgactcacatgacaaaaacagtatcaaccagtaaaaaaccccgtaaacagcattcgcctgaatttcgcagtgaag           <  1:814232‑M2/143‑133 (MQ=255)

                                                                                                                                    gAAGCGTGAACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctaagtcagaggtgactcacatgacaaaaacagtatcaaccagtaaaaaaccccgtaaacagcattcgcctgaatttcgaagtgaag           <  1:614377‑M2/143‑133 (MQ=255)

                                                                                                                                           gAACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagaggtgactcacatgacaaaaacagtatcaaccagtaacccaccacgtttatgtcattcgcctgaatttcgcagtgaagccctgaa    >  1:470498‑M2/1‑4 (MQ=255)

                                                                                                                                           aaactgatcttacccagcaatagcggacacgcagctaagtgagtaaactctcagtcagatgtgactcacatcacaaaaacagtatctaccagtaaaaaaccccgtaaacagcattcgcctgaatttcgcagtgaagccctgaa    >  2:961908‑M2/2‑4 (MQ=255)

GAACAACTCCGGTGACTTCTGCGCTAAACGGGGACGTTTATGCGCACATACAATCCAAACTCTCTTCTCCCTTCACAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACCTCTCACAAGACGGCATCAAATTACATCGCGGCAACTTCACCGCTATCGGTCGGCAGATCCAGCCTTATCTGGAGGAGGGCAAATGCTTTCGCATGGTGCTTAAACCGTGGCGTGAGAAACGCAGTCTTTCCCAGAATGCA  >  NC_000913/572329‑572612

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 13 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.