| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 1207790 = | 11 (0.200) | 40 (0.810) | 34/232 | NT | 83.6% | coding (290/630 nt) | ycfK | e14 prophage; protein StfP |
| ? | NC_000913 | 1209619 = | 6 (0.120) | pseudogene (37/537 nt) | stfE | e14 prophage; putative side tail fiber protein fragment | |||||
TCGGATAAGCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAACGTAATGCGCTGAACTGTGCA > NC_000913/1209478‑1209759 | cagatgcttttgcggcattccacccccactgaatgattactgattgctcaataccaccaatcataaccggtatagctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttactaattctcccaaaccaaCg > 1:516298‑M2/142‑143 (MQ=255) tgcttttgcggcattccacccccactgaatgattactgattgctcaataccaccaatcataaccggtatagctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCgtttg > 1:400922‑M2/138‑142 (MQ=255) ctgcggcatcccacccccaccgaatgattactgattgctccataccaccaatcataaccggtatagctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGaaa < 2:633059‑M2/11‑1 (MQ=255) tgcggcattccacccccactgaatgattactgattgctcaataccaccaatcataaccggtatagctatgaaaccagtgcgtcctaatgtagccgttgctgcattgagttttgcgcctgctccccaaccaaCGGatatgcaga > 1:276109‑M2/132‑139 (MQ=255) tttGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTTACTGAAGGCCACGGAACCGGCCCAACCGCAGTTAGTGCAGAGCCGAGTCCCACACAAACGTATATGaaact > 2:952235/1‑141 (MQ=255) gcattccacccccactgaatgattactgattgctcaataccaccaatcataaccggtatagctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGCAAAtgat > 1:215029‑M2/128‑142 (MQ=255) cattccacccccactgaatgattactgattgctcaataccaccaatcataaccggtatagctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATgaag < 1:1106477‑M2/17‑1 (MQ=255) cattccacccccactgaatgattactgattgctcaataccaccaatcataaccggtatagctatgaaaccgatgcgtcctaatgtagccgttgctgcattgaggtttgatccttatccgaaacaaaCGTTTATGAAAATggag > 1:304878‑M2/127‑143 (MQ=255) ccccactgaatgattactgatttctcaataccaccaaccataaccggtatagctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACa < 2:928162‑M2/25‑1 (MQ=255) cccactgaatgattactgattgctcaatagcaccagtcataaccggtatagctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACaa < 2:688892‑M2/26‑1 (MQ=255) ccactgaatgattactgattgctcaataccaccaatcataaccggtatagctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctccccaaccgaCGTTTATGACCATGTAGAAATACCAAg > 1:936771‑M2/117‑143 (MQ=255) cactgaatgattactgagtgctcaataccaccaatcataaccggtatagctatgaaaccggtgcgtcctaatgtagccattgctgaattgagttttgctccttctcccaaacacaAGTTGATGAAAAGGAAGAAATAACAAGc > 2:367966‑M2/116‑143 (MQ=255) aatgagtactggttgctcaataccaccgatcataccgggtatagctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagtttttctccttctcccaaaccatCGTTTATGAAAATGAAGAAATAACAAGCAAATg < 1:832988‑M2/33‑1 (MQ=255) gattactgattgctcaataccaccaatcataaccggtatagctatgaaaccggtgcgtcctaatgtaaccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGca > 1:819460‑M2/108‑143 (MQ=255) tgctcaataccaccaatcataaccggtatagctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATG‑AAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCt < 2:507160‑M2/46‑1 (MQ=255) ctcaataccaccaatcataaccggtatagctatgaaaccggtgtgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCtt > 2:655577‑M2/96‑143 (MQ=255) ctcaataccaccaatcataaccggtatagctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAACAACAAGCAAATGGCATCAGTCCTGCtt > 1:1027479‑M2/96‑143 (MQ=255) ctcaagaccacccagcataaccggtatagctatgaaaccggtgcgtcctaaggtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCtt < 2:807225‑M2/48‑1 (MQ=255) tcaataccaccaatcataaccggtatagctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCttt > 1:18581‑M2/95‑143 (MQ=255) aataccaccaatcataaccggtatagctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTa > 1:756974‑M2/93‑143 (MQ=255) cccaatcatacccgggttagctatgaaaccgttgcgtcctaatgtagccgttgctgcattgagttgtgctccatctcccgtgtcatCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAggg < 2:443520‑M2/57‑1 (MQ=255) accaatcatatccggtatagcgatgaaaccggtgcgtcctattgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAggg < 2:868339‑M2/57‑1 (MQ=255) accaatcatacccggtatagctatgaaaccggtgcgtcctcatgtagccgttgctgcattgagttttgctccttcttccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAggg < 1:463425‑M2/57‑1 (MQ=255) cccatcacaccctgtattgctatgactccggcgcgtcctcatgtagccgttgctgcagtgagtttggctccttctcccaaaccacCGTTTATGAACATGACGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAgggg < 2:685022‑M2/58‑1 (MQ=255) aatcataaccggtatagctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcgcaaaccaaCGTTTATGGAAATGAAGAAATAACGAGCAAATGGCATCATTCGTGCTTTTACCAGGGGGa > 1:14114‑M2/84‑143 (MQ=255) taaccggtatagctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTaa > 1:168355‑M2/79‑143 (MQ=255) accggtatagctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACa > 1:585476‑M2/77‑143 (MQ=255) ggtatagctatgaaaccggtgcgtcctcatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGc < 1:19160‑M2/70‑1 (MQ=255) ctatgaaaccgatgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATAGCATCATTCCTGCTAATACCAGGGGGATTTAACATGCTTATTgg > 1:569888‑M2/67‑143 (MQ=255) tatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGc > 1:135395‑M2/66‑143 (MQ=255) tatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGc > 1:194273‑M2/66‑143 (MQ=255) gCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTCTTGGCTATGTAc > 1:954236/1‑143 (MQ=255) ggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctccccacccacCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCATGCACCAGGGTGATTTAACATGCTTATTGGCTATGTAcgc < 2:187717‑M2/87‑1 (MQ=255) tgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATCCTTATTGGCTATGTACGCGt > 1:198881‑M2/55‑143 (MQ=255) gCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGAATTTAACATGCATACTGGCTATGTACGCGTATc > 2:732290/1‑143 (MQ=255) tcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATca > 2:449444‑M2/51‑143 (MQ=255) ccACGGAACCGGGACACCAACAGGTAATGCAGAGCCTGCTCCCAAACCAACGGTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTGATTGGCTATGTACGCGTATca > 1:1002117/1‑143 (MQ=255) cctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATcaa > 1:1028974‑M2/50‑143 (MQ=255) ctaatgtagcctttgctgtattgagttttgctccttctcccaaaacaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATcaac < 2:1106717‑M2/95‑1 (MQ=255) ctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTatcagc > 2:704213‑M2/49‑141 (MQ=255) ctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATcaac < 1:464833‑M2/95‑1 (MQ=255) taatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATcaaca < 1:655577‑M2/96‑1 (MQ=255) cGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGAc < 1:872448/143‑1 (MQ=255) gccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATACACAAATGAcc > 1:661053‑M2/41‑143 (MQ=255) aCAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAg > 1:900656/1‑143 (MQ=255) aattgaattttgctccgcctccaaaaccaaCGTTAATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGa < 1:103840‑M2/113‑1 (MQ=255) attgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACACGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACAAGAACAGAGAt > 1:976108‑M2/30‑143 (MQ=255) agttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGCCTATGTACGCGTATCGACAAATGACCAGAACACAGATATAc > 2:869897‑M2/26‑143 (MQ=255) ctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAACGTaa < 2:18581‑M2/125‑1 (MQ=255) cttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTCCAACGTAATgc > 1:12629‑M2/16‑143 (MQ=255) cTTCTCCCAAACCAACGTTTAGGAAAATGAAGAAATAACACGCAAATGGCATCATTCATAATTGTACCAGGGGGATTTAACATGCTTATTGCCTATGTACGGGTATCAGCAAATGACAGGAACGCAGATCTACCACGTAATgc > 2:16848/1‑143 (MQ=255) cccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAACGTAATGCGCTGa > 1:1027643‑M2/11‑143 (MQ=255) atcGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAACGTAATGCGCTGAACTGTGCa < 1:769218/141‑1 (MQ=255) | TCGGATAAGCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAACGTAATGCGCTGAACTGTGCA > NC_000913/1209478‑1209759 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |