| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 1207805 | 11 (0.200) | 28 (0.570) | 27/232 | NT | 78.2% | coding (305/630 nt) | ycfK | e14 prophage; protein StfP |
| ? | NC_000913 | = 1209602 | 6 (0.120) | pseudogene (54/537 nt) | stfE | e14 prophage; putative side tail fiber protein fragment | |||||
AATCAGGCAATTTATTTGTCGGATAAGCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGC‑GGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACA > NC_000913/1209460‑1209737 | agtcgggCATTTTATTTGTCGGATAAGCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGC‑GGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCagag < 2:794256/138‑1 (MQ=255) ccacgCAATTTATTTGTCGTATAAGCCTTTGCCAGTTCCGTGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGC‑GGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGcc < 2:563012/139‑1 (MQ=255) ggCAATTTATTTGTCGGATAAGCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCAATGCATTTCAGCCAGCCTGTTGGC‑GGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttc < 2:367269‑M2/143‑6 (MQ=255) cAATCTACTTGTCGGATAACCCTTCGCCAGTCCCGTGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGC‑GGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctc > 1:111121‑M2/1‑136 (MQ=255) gttgatgtGTCGGATAAGCGGTGGCTAGTTCCTGGTATTCGTCAGCAGAAAAAGCGGCACCATTGGATTTCAGCCAGCCTGTTGGC‑GGAGTGACTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTccc < 1:236188/136‑1 (MQ=255) gATAAGCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGC‑GGAGTGGCTGAAGGCCACGGAACCGGGACACCGACAGGTAATGCAGAGccttctccccaaccaaggttt < 2:680918‑M2/143‑22 (MQ=255) gATAAGCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGC‑GGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTCATGCAGAGccttctcccaaaccaaggttt < 1:778576‑M2/143‑22 (MQ=255) gATAAGCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGC‑GGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggctt < 1:244947‑M2/143‑22 (MQ=255) gATAAGCCTTGGCCAGTTCCGGGCATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGC‑GGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttt > 1:114982‑M2/1‑122 (MQ=255) aGCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGC‑GGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcga > 1:1076154‑M2/1‑118 (MQ=255) tttGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGC‑GGAGTTACTGAAGGCCACGGAACCGGCCCAACCGCAGTTAGTGCAGAGCCGAGTCCCACACAAACGTATATGaaact > 2:952235/1‑141 (MQ=255) tttGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGC‑GGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagc < 1:890196‑M2/143‑30 (MQ=255) gCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGC‑GGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgt > 1:565790‑M2/1‑111 (MQ=255) cAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGC‑GGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccacaccaaggttttcgagagccgttt < 1:173412‑M2/143‑35 (MQ=255) aGGTCCGGGTATGCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGC‑GGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttg > 2:1008339‑M2/1‑108 (MQ=255) ggTAGTCGTCAGCAGAAAGAGCAGCTCCATTTCATTTCAGCCAGCCTGTTGGC‑GGAGTGGCTGAAGGCCACGGAACCGGGACACTAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtg > 2:872591‑M2/1‑101 (MQ=255) agcagAAAAAGCGGCACCATTGCATTTGAGCCATCCTGTAGGCTGGTGTGG‑TGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatt > 2:952502‑M2/1‑91 (MQ=255) cagAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGC‑GGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttg < 1:735714‑M2/143‑55 (MQ=255) cACCATTGCATTTCAGCCAGCCTGTTGGC‑GGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttgtcgagagccgtttgcacagtgccatccgatttcgtatcgacaaac < 2:618523‑M2/143‑67 (MQ=255) aCCATTGCATTTCAGCCAGCCTGTTGGC‑GGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccaaacg < 2:156751‑M2/143‑68 (MQ=255) cATTGCATTTCAGCCAGCCTGTTGGC‑GGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccaaacgga < 1:791714‑M2/143‑70 (MQ=255) cATTGCATTTCAGCCAGCCTGTTGGC‑GGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgagttgatctggccaaacgga < 2:203359‑M2/143‑70 (MQ=255) tttCAGCCAGCCTGTTGGC‑GGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGcctactcccaaaccaaggttttcgagagccgcttgcacagtgccatccgacttgatatcgcccaacggactcctcc < 2:72935‑M2/143‑77 (MQ=255) ttCAGCCAGCCTGTTGGC‑GGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccaaacggattcttgcg < 1:161675‑M2/143‑78 (MQ=255) ggccagcctGTTGGC‑GGAGTGGCTGAAGCCCACGGCACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccaaacggattcttgcggct > 2:1003477‑M2/2‑63 (MQ=255) gAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccaagcggattcgtgcggcttaccagcacggcgcgc < 1:1075171‑M2/143‑97 (MQ=255) ggCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccaaacggattcttgcggcttaacagcagcgcgcgaagtg > 1:551432‑M2/1‑43 (MQ=255) gCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTCTTGGCTATGTAc > 1:954236/1‑143 (MQ=255) tGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccaaacggattcttgcggcttaacagcagcgcgcgaagtgcgg < 1:686261‑M2/143‑104 (MQ=255) aGTCCACGGACCCGGGACCCCTACAGGTAATGCAGAGcctcctcccgatccaagcttttcgagggccggttgcacagtgccatccgatttgatatcgccaaacggattcttgcggcttaacagcagcgcgctaagtgcggtaa > 2:68757‑M2/1‑37 (MQ=255) gCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGAATTTAACATGCATACTGGCTATGTACGCGTATc > 2:732290/1‑143 (MQ=255) ccACGGAACCGGGACACCAACAGGTAATGCAGAGCCTGCTCCCAAACCAACGGTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTGATTGGCTATGTACGCGTATca > 1:1002117/1‑143 (MQ=255) cACGGAACCGCGACACCAACAGGTAATGCAGAGcctgctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccaaacggattgttgcggcgtaacagcagcgcgcgaagtgcggtaactaa < 1:717054‑M2/143‑111 (MQ=255) aCGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccaaacggattcttggggcttaacggcagcgcgcgaagtgcggtaagtaac < 1:418850‑M2/143‑112 (MQ=255) ggAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccaaacggattcttgcggcttaacagcagcgcgcgaagtgcggtaagtaactg > 2:161675‑M2/1‑30 (MQ=255) ggAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatgtgatatcgccaaacggcttcttgcggcttcacagcagcgcgcgaagtgcggtaagtaactg < 1:41065‑M2/143‑114 (MQ=255) aCCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccaaacggattcttgcggcttaacagcagcgcgcgaagtgcggtaagtaactggtc < 1:705280‑M2/143‑117 (MQ=255) cGGGACACCAACAGGTAATGCAGAGcctgctcccaaaccaaggctttcgagagccgtgtgcacagtgccatccgatttgatatcgccaaacggattcttgcggcttaacagcagcgcgcgaagtgcggtaagtaactggtcgt > 1:638091‑M2/1‑25 (MQ=255) cGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGAc < 1:872448/143‑1 (MQ=255) ccAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatgtgatatcgccaagcgggttcttgcggcttcacagcagcgcgcgcagtccggtaagtaactggtcgtgtcgcgc < 2:352834‑M2/143‑126 (MQ=255) aCAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAg > 1:900656/1‑143 (MQ=255) gTAATGGAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccaaacggattcttgcggcttaacagcagcgcgcgaagtgcggtaagtaactggtcgtgccgccccttctcc > 1:1105261‑M2/1‑11 (MQ=255) aTGCAGAGccttcccccagacccaggtttccgagagccgtttgcacagtgccatccgatttgagatcgccaaaaagattcttgtggcttaacagcagcgcgcgaagtgcggtaagtaactggtcgtgccgccccttctccagg > 1:156751‑M2/1‑8 (MQ=255) | AATCAGGCAATTTATTTGTCGGATAAGCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGC‑GGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACA > NC_000913/1209460‑1209737 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |