| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 2288919 = | NA (NA) | 12 (0.210) | 12/264 | NT | 23.5% | noncoding (1195/1195 nt) | IS5 | repeat region |
| ? | NC_000913 | = 4555686 | 39 (0.690) | coding (635/831 nt) | yjiC | uncharacterized protein YjiC | |||||
CGGTTGCAGAGTCATACGTTTGAGTGGTGCATTTTCATCA‑CCCGGGATAACTTTATATCCCATTTTTGCATGGATCTCCGCGGTACCGGGATAGGCTTCTATACCAATTATTGGGTCATTACCCAACTCAATATTAGCATTAAGTAATGCGGCAAGGGCGAATCCGGAAGAATTTGCTACCCCTGTTACCGTCATTATCTGATCAATATAGATATCAATCCTTGGCTGCTCATTGGTCCATCTTTTTGCCTGAGAAGCTGGAAGGGTTGAAATATATCC > NC_000913/4555550‑4555828 | cGGTTGCAGAGTGATACGTTTGAGTGGTGCA‑TTCCATTATGTCCTTATAACTTTATATCCCATTTTTGCATGGATCTCCGCGGTACCGGGATAGGCTTCTATACCAATTATTGGGTCATTACCCAACTCAATATTAGCATTaa < 2:229734/143‑1 (MQ=255) cAGAGTCATACGTTTGAGTGGTGCATTTTCATCA‑CCCGGGATAACTTTATATCCCATTTTTGCATGGATCTCCGCGGTACCGGGATAGGCTTCTATACCAATTATTGGGTCATTACCCAACTCAATATTAGCATTAAGTAATg > 1:393590/1‑143 (MQ=255) gagTCATACGTTTGAGTGGTGCATTTTCATCA‑CCCGTGATAACTTTATATCCCATTTTTGCATGGATCTCCGCGGTTCCGGGATAGGCTTCTATACTAATTATGGGGTCATTACCCAACTCAATATTAGCATTAAGTAATGCg < 2:498245/143‑1 (MQ=255) gagTCATACGTTTGAGTGGTGCATTTTCATCA‑CCCGGGATAACTTTATATCCCATTTTTGCATGGATCTCCGCGGTACCGGGATAGGCTTCTATACCAATTATTGGGTCATTACCCAACTCAATATTAGCATTAAGTAATGCg < 2:385609/143‑1 (MQ=255) cGTTTGAGTGGTGTATTTTCATCA‑CCCGGGATAACTTTATATCCCATTTTTGCATGGATCTCCGCGGTACCGGGATAGGCTTCTATACCAATTATTGGGTCATTACCCAACTCAATATTAGCATTAAGTAATGCGGCAAGGGc < 2:299713/143‑1 (MQ=255) cGTTTGAGTGGTGCATTTTCATCA‑CCCGGGATAACTTTATATCCCATTTTTGCATGGATCTCCGCGGTACCGGAATAGGCTTCTATACCAATTATTGGGTCATTACCCAACTCAATATTAGCATTAAGTAATGCGGCAAGGGc < 2:155648/143‑1 (MQ=255) gTTTGAGTGGTGCATTTTCATCA‑CCCGGGATAACTTTATATCCCATTTTTGCATGGATCTCCGCGGTACCGGGATAGGCTTCTATACCAATTATTGGGTCATTACCCAACTCAATATTAGCATTAAGTAATGCGGCAAGGGCg > 1:927736/1‑143 (MQ=255) tttGAGTGGTGCATTTTCATCA‑CCCGGGATAACTTTATATCCCATTTTTGCATGGATCTCCGCGGCACCGGGATAGGCTTCTATACCAATTATTGGGTCATTACCCAACTCAATATTAGggacagtgcgaataagccgggaaa < 2:155018‑M2/143‑25 (MQ=255) ttGAGTGGTGCATTTTCATCA‑CCCGGGATAACTTTATATCCCATTTTTGAATGGATCTCCGCGGTACCGGGATAGGCTTCTATACCAATTATTGGGTCATTCCCCAACTCAATCTTGGCATTAAATAATGCGCCAAGGCCGaa > 2:1045950/1‑143 (MQ=255) tGAGTGGTGCATTTTCATCA‑CCCGGGATAACTTTATATCCCATTTTTGCATGGATCTCCGCGGTACCGGGATAGGCTTCTATACCAATTATTGGGTCATTACCCAACTCAATATTAGggaaggtgcgaataagcggggaaatt > 2:887174‑M2/1‑117 (MQ=255) gAGTGGTGCATTTTCATCA‑CCCGGGATAACTTTATAGCCCATTTTTGCATGGATCTCCGCGGTACCGGGATAGGCTTCTATACCAATTATTGGGTCATTACCCAACTCAATATTAGCATTAAGTAATGCGGCAAGGGCGAATc > 1:714925/1‑143 (MQ=255) gtgCATTTTCATCA‑CCCGGGATAACTTTATATCCCATTTTTGCATGGATCTCCGCGATACCGGGATAGGCTTCTATACCAATTATTGGGTCATTACCCAACTCAATATTAGCATTAAGTAATGCGGCAAGGGCGCACCCCgaa > 2:788071/1‑143 (MQ=255) gggCATTTTCATCA‑CCCGGGATAACTTTATATCCCATTTTTGCATGGATCGCCGCGGTACCGGGATAGGCTTCTATACCAATTCTTGGGTCATTACCCAACTCAATATTAGCATTAAGTAATGCGGCAAGGGCGAATCCAgaa < 2:17401/141‑1 (MQ=255) tgCATTTTCATCA‑CCCGGGATAACTTTATATCCCATTTTTGCATGGATCTCCGCGGTACCGGGATAGGCTTCTATACCAATTATTGGGTCATTACCCAACTCAATATTAGCATTAAGTAATGCGGCAAGGGCGAATCCGgaag < 2:89530/143‑1 (MQ=255) tgCATTTTCATCA‑CCCGGGATAACTTTATATCCCATTTTTGCATGGATCTCCGCGGTACCGGGATAGGATTCTATACCAATTATTGGGTCATTACCCCACTCAAGACTAGCATTGAGTAATGGGGCCAGGGCGAATCCGgcag > 1:127260/1‑143 (MQ=255) aTTTTCATCA‑CCCGGGATAACTTTATATCCCATTTTTGCATGGATCTCCGCGGTACCGGGATAGGCTTCTATACCAATTATTGGGTCATTACCCAACTCAATATTAGCATTAAGTAATGCGGCAAGGGCGAATCCGGAAGAAt < 1:1008940/143‑1 (MQ=255) tttCATCA‑CCCGGGATAACTTTATATCCCATTTTTGCATGGATCTCCGCGGTACCGGGATAGGCTTCTATACCAATTATTGGGTCATTACCCAACTCAATATTAGCATTAAGTAATGCGGCAAGGGCGAATCCGGAAGAAttt > 1:664447/1‑143 (MQ=255) a‑CCCGGGATAACTTTATATCCCATTTTTGCATGGATCTCCGCGCTACCGGGATAGGCTTCTCTACCAATTATTGGGTCATTACCCAACTCAATATTTGCATTAAGTAATGCGCCACGTGCGAATCCGGAAGAATTTGCTAcac > 2:453888/1‑141 (MQ=255) cccGGGATAACTTTATATCCCATTTTTGCATGGATCTCCGCGGTACCGGGATAGGCTTCTATACCAATTATTGGGTCATTACCCAACTCAATATTAGCATTAAGTAATTCGGCAAGGGCGGATCCGGAAGAACTTGCTAcccc > 1:215659/1‑143 (MQ=255) gggATAACTTTATATCCCATTTTTGCATGGATCTCCGCGGTACCGGGATAGGCTTCTATACCAATTATTGGGTCATTACCCAACTCAATATTAGCATTAAGTAATGCGGCAAGGGCGAATCCGGAAGAATTTGCTACCCCTGt < 2:255871/143‑1 (MQ=255) tAACTTTATATCCCATTTTTGCATGGATCTCCGCGGTACCGGGATAGGCTTCTATACCAATTATTGGGTCATTACCCAACTCAATATTAGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatt < 2:290054‑M2/143‑54 (MQ=255) accttATATACCATTTTAACATGAATCTCAGCGGTCACGCGATACGCTTCTATAATCGTTTTTGGATAGTTACCCTACTCCATATTAGCATTAAGTCCTGTGGCGAAGTGGAAGCCTGAACAACTTGCTACCCCTGTTACCGt < 2:283515/140‑1 (MQ=255) tatCCCATTTTTGCATGGATCTCCGCGGTACCGGGATAGGCTACTATAGCAATTATTGGGTCATTACCCAACTCAATATTAGCATTAAGTAATGCGGCAAGGGCGAATCCGGAAGAATTTGCTACTCCTGTTACCGTCATTAt > 1:867638/1‑143 (MQ=255) cccATTTTTGCATGGATCTCCGCGGTACCGGGATAGGCTTCTATACCAATTATTGGGTCATTACCCAACTCAATATTAGCATTAAGTAATGCGGCAAGGGCGAATCCGGAAGAATTTGCTACCCCTGTTACCGTGATTAGCTg > 1:195953/1‑143 (MQ=255) ccATTTTTGCATGGATCTCCGCGGTACCGGGATAGGCTTCTATACCAATTATTGGGTCATTACCCAACTCAATATTAGCATTAAGTAATGCGGCAAGGGCGAATCCGGAAGAATTTGCTACCCCTGTTACCGTCATTATCTGa > 1:770131/1‑143 (MQ=255) ccATTTTTGCAGGGATCTCCGCGGTACCGGGATAGGCTTCTATACCAATTATTGGGTCATTACCCAACTCAATATTAGCATTAAGTAATGCGGCAAGGGCGAATCCGGAAGAATTTGCTACCCCTGTTACCGTCATTATCTGa < 2:1008091/143‑1 (MQ=255) tatTTTTGCATGGATCTCCGCGGTACCGGGATAGGCTTTTATACCAATTATTTGGTCATTACCCAACTCAATATTAGggaaggtgcgaataatcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttga > 1:477893‑M2/2‑77 (MQ=255) cATTTTTGCCTGGATCTCCGCGGTACCGGGATAGGCTTCTATACCAATTATTGGGTCATTACCCAACTCAATATTAGCATTAAGTAATGCGGCAAGGGCGAATCCGGAAGAATTTGCTACCCCTGTTACCGTCATTATCTGAt < 1:485917/143‑1 (MQ=255) tttttGCATGGATCTCCGCGGTCCCGGGATAGGCTTCTATACCAATTATTGGGTCATTACCCAACTCAATATTAGCATTAAGTAATGCGGCAAGGGCGAATCCGGAAGAATTTGCTACCCCTGTTACCGTCATTATCTGATCa < 2:881471/143‑1 (MQ=255) cATGGATCTCCGCGGTACCGGGATAGGCTTCTATACCAATTATTGGGTCATTACCCAACTCAATATTAGCATTAAGTAATGCGGCATGGGCTAATCCGGAAGAATTTGCTCCCCCTGTTACCGTCATTATCTGATCAATATAg < 1:701368/143‑1 (MQ=255) tGGATCTCCGGTTTACCGGGATAGGCTTCTATACCAATTATTGGGTCATTACCCAACTCAATATTAGCATTAAGTAATGCGGCAAGGGCGAATCCGGAAGAATTTGCTACCCCTGTTACCGTCATTATCTGATCAATATAGat < 2:970863/143‑1 (MQ=255) cgGTACCGGGATCGGCTTCTATACCAATTATTGGGTCACTACCCACCTCACTAGTAACATTAAGTAATGCGGCAAGGGCGAATCCGGAAGAATTTGCTACCCCTGTTACCGTCATTATCTGATCAATATAGATATCAATCCtt < 1:509312/143‑1 (MQ=255) gTACGGGGATAGGCTTCTATACCAATTATGGGGTCATTACCCAACTCAATATTAGCATTAAGTAATGCGGCAAGGGCGAATCCGGAAGAATTTGCTACCCCTGTTACCGTCATTATCTGATCAATATAGATATCAATCCTTgg < 2:737076/143‑1 (MQ=255) gTACCGGGATAGGCTTCTATACCAATTATTGGGTCATTACCCAACTCAATATTAGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaat < 2:883520‑M2/143‑89 (MQ=255) aCCGGGATAGGCTTCTATACCAATTATTGGGTCATTACCCAACTCAATATTAGCATTAAGTAATGCGGCAAGGGCGAATCCGGAAGAATTTGCTACCCCTGTTACCGTCATTATCTGATCAATATAGATATCAATCCTTGgct > 1:966765/1‑143 (MQ=255) aCCGGGATAGGCGTCTATACCAATTATTGGGTCATTACCCAACTCAATATTAGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaatgc > 1:481610‑M2/1‑53 (MQ=255) gggATAGGCTTCTATACCATTTATTGGGTCATTACCCAACTCTATATTAGCATTAAGTAATGCGGCAAGGGCGAATCCGGAAGAATTTGCTACCCCTGTTTCCTTCATTATCTGATCAATATAGATATCAATCCTTGgctgct < 2:78204/143‑1 (MQ=255) gctagGCTTCTATACCAATTATTGGGTCATTACCCAACTCAATATTAGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgttt > 2:331165‑M2/3‑48 (MQ=255) gATAGGCTTCTATACCAATTATTGGGTCATTACCCAACTCAATATTAGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgttt < 1:331165‑M2/112‑65 (MQ=255) aTAGGCTTCTATACCCATTATTGTGTCATTACCCAACTCAATATTAGCATTAAGTAATGCGGCAAGGGCGAATCCGGAAGAATTTGCTACCCCTGTTACCTTCATTATCTGATCAATATAGATATCAATCCTTGGCTGCTCAt < 1:1051769/143‑1 (MQ=255) ttggctCTATACCATTTGTTTGGTCATTACCCAACTCCGTATTAGCATTAAGTAATGCGGCAAGGGCGAATCCGGAAGAATTTGCTACCCCTGTTACCGTCATTATCTGATCAATATAGATATCAATCCTTGGCTGCTCATTg < 2:110286/138‑1 (MQ=255) ttCTATACCAATTATTGGGTCATTACCCAACTCAATATTAGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaatgccttgaatcagcc > 1:1067026‑M2/1‑41 (MQ=255) aCCAATTATTGGGTCATTACCCAACTCAATATTAGCATTAAGTAATGCGGCAAGGGCGAATCCGGAAGAATTTGCTACCCCTGTTACCGTCATTATCTGATCAATAGAGATATCAAGCCGTGGCTGGTCATTGGTCCATcctg > 2:715863/1‑140 (MQ=255) attattGGGTCATTACCCAACTCAATATTAGCATTAAGTAATGCGGCAAGGGCGAATCCGGAAGAATTTGCTACCCCTGTTACCGTCATTATCTGATCAATATAGATATCAATCCTTGGCTGCTCATTGGTCCATCTTTTTGc < 1:768544/143‑1 (MQ=255) attGGGTCATTACCCAACTCAATATTAGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaatgccttgaatcagcctgtttagtccgtt < 2:930923‑M2/143‑116 (MQ=255) ggTCATTACCCAACTCAATATTAGCATTAAGTAATGCGGCAAGGGCGAATCCGGAAGAATTTGCTACCCCTGTTACCGTCATTATCTGATCAATATAGATATCAATCCTTGGCTGCTCATTGGTCCATCTTTTTGCCTGAGaa < 1:565687/143‑1 (MQ=255) tCATTACCCAACTCAATATTAGCATTAAGTTCTGCGGCAAAGTCGAATCCGGAAGAATTTGCTACCCCTGTTACCGTCATTATCTGATCAATATAGATATCAATCCTTGGCTGCTCATTGGTCCATCTTTTTGCCTGAGAAGc < 2:778125/143‑1 (MQ=255) tCAATACCCAACTCCATATTTGtgaaggggcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaatgccttgaatcagcctatttagaccgtttcttcg > 1:1036853‑M2/1‑22 (MQ=255) aTTACCCAACTCAATATTAGCATTAAGTAATGCGGCAAGGGCGAATCCGGACGAATTTGCTACCCCTGTTACCGTCATTATCTGATCAATATAGATATCAATCCTTGGCTGCTCATTGGTCCATCTTTTTGCCTGAGAAGCTg > 1:1005400/1‑143 (MQ=255) ccAACTCAATATTAGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaatgccttgcatcagcctgtttagaccgtttcttcgccattta < 2:815169‑M2/143‑129 (MQ=255) cAACTCAGTATTAGCAGTAAGTAACGCGGCTAGGGCGAATCCGGAAGAATTTGCTACCCCTGTTACCGTCATTATCTGATCAATATAGATATCAATCCTTGGCTGCTCATTGGTCCATCTTTTTGCCTGAGAAGCTGGAAggg < 2:854472/143‑1 (MQ=255) ttAGCATTAAGTAATGCGGCAAGGGCGAATCCGGAAGAATTTGCTACCCCTGTTACCGTCATTATCTGATCAATATAGATATCAATCCTTGGCTGCTCATTGGTCCATCTTTTTGCCTGAGAAGCTGGAAGGGTTGAAatata > 2:858319/1‑143 (MQ=255) gggatggtgcgcataggcgggcaatttcgtctcggctggctcagtcatgtcatttcttcatgtttgagccgattttttctcccgtaaatgccttgaatcagcctatttagaccgtttcttcaccatctaaagcgttatcctca > 2:193417‑M2/1‑1 (MQ=255) | CGGTTGCAGAGTCATACGTTTGAGTGGTGCATTTTCATCA‑CCCGGGATAACTTTATATCCCATTTTTGCATGGATCTCCGCGGTACCGGGATAGGCTTCTATACCAATTATTGGGTCATTACCCAACTCAATATTAGCATTAAGTAATGCGGCAAGGGCGAATCCGGAAGAATTTGCTACCCCTGTTACCGTCATTATCTGATCAATATAGATATCAATCCTTGGCTGCTCATTGGTCCATCTTTTTGCCTGAGAAGCTGGAAGGGTTGAAATATATCC > NC_000913/4555550‑4555828 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |