| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 3700415 | 51 (0.900) | 3 (0.060) | 3/248 | NT | 5.7% | intergenic (+216/‑148) | rdlD/yhjV | antisense regulatory RNA RdlD/putative transporter YhjV |
| ? | NC_000913 | = 3700421 | 51 (0.960) | intergenic (+222/‑142) | rdlD/yhjV | antisense regulatory RNA RdlD/putative transporter YhjV | |||||
CTACGATTGCTTTTTACTGTCAGCACCCGGCAATCTTCCTCATTGCGCGATGCCTTCCAGCTTAA‑TTTCTTTATTTGCAATAGTTGCAGTTCATATCCGGGCTGACTCCAGACTGGTAGTGAAATGCGCAATTTTGTAGAATTGCGCCTCCTCGCGACCTCCCCAGTGAATCTGT‑TGCCTCATTTTTTACATACTGCGTATTCGACTTCTCCACCTGTTGCGCAAGAGAAACTGGGTTTATTCATTTTTGCGAGGCCGACTTCTTTCTGGACAG > NC_000913/3700283‑3700556 | cTACGATTGCCTTTTACTGTCAGCACCCGGCAATCTTCCTCATTGCGCGATGCCTTCCAGCTTAA‑TTTCTTTATTTGCAATAGTTGCAGTTCATATCTGGGCCAACTCCAGACTGGTAGTGAAATGCTCAATTTTGTAGaatt > 2:447893‑M2/1‑139 (MQ=255) aCGATTGCTTTTTACTGTCAGCACCCGACAATCTTCCTCATTGCGCGATGCCTTCCAGCTTAA‑TTTCTTTATTTGCAATAGTTGCAGTTCATATCCGGGCTGACTCCAGACTGGTGGTGAAATGCGCAATTTTGTAGaattgg < 1:499958‑M2/143‑7 (MQ=255) cGATTGCTTTTTACTGTCAGCACCCGGCAATCTTCCTCATTGCGCGATGCCTTCCAGCTTAA‑TTTCTTTATTTGCAATAGTTGCAGTTCATATCCGGGCTGACTCCAGACTGGTAGTGAAATGCGCAATTTTGTAGaattgtg < 1:37658‑M2/143‑8 (MQ=255) gATTGCTTTTTACTGTCAGCACCCGGCAATCTTCCTCATTGCGCGATGCCTTCCAGCTTAA‑TTTCTTTATTTGCAATAGTTGCAGTTCATATCCGGGCTGACTCCAGACTGGTAGTGAAATGCGCAATTTTGTAGaattgcgc > 2:914499‑M2/1‑135 (MQ=255) ttGTTTTTTACCTTCACCTCCCGTCTATCCTCCTGCTTGCGCGATGCCGTCCATCTTAA‑TTTCTTTATTTGCAATAGTCGCAGTTCATATCCGGGCTGACTCCAGACTGGTAGTGAAATGCGCAATTTTGTAGAATTGCGcct < 2:169665/143‑1 (MQ=255) cTTTTTACTGTCAGCACCCGGCAATCTTCCTCATTGCGCGATGCCTTCCAGCTTAA‑TTTCTTTATGTGCGATCGTTGCAGTTCATATCCGGGCTGACTCCGGACTGGTGGTGGAATGCGCAATTGTGTAGAGCTGCGcgtcct > 2:42213/1‑143 (MQ=255) ttACTGTCAGCACCCGGCAATCTTCCTCATTGCGCGATGCCTTCCAGCTTAA‑TTTCTTTATTTGCAATAGTTGCAGTTCATATCCGGGCTGACTCCAGACTGGTAGTGAAATGCGCAATTTTGTATAATTGCGCCTCCTcccg > 1:89200/1‑143 (MQ=255) aCTGTCAGCACCCGGCAATCTTCCTCATTGCGCGATGCCTTCCAGCTTAA‑TTTCTTTATTTGCAATAGTTGCAGTTCATATCCGGGCTGACTCCAGACTGGTAGTGAAATGCGCAATTTTGTAGAATTGCGCCTCCTCGCGAc > 2:93055/1‑143 (MQ=255) gTCAGCACCCGGCAATCTTCCTCATTGCGCGATGCCTTCCAGCTTAA‑TTTCTTTATTTGCAATAGTTGCAGTTCATATCAGTGCTGACTCCAGACTGGTAGTGAGATGTGCAATTTGGTCGAATTGCTCCTGCTCGCGcccac > 2:63917/1‑141 (MQ=255) tCAGCACCCGGCAATCTTCCTCAGTGCGCGATGCCTTCCAGCTTCG‑TTTCTTTATTTGCAAAAGTTGCAGTTCGTACACGGGCTGACTCCAGACTGGTAGTGAAGTGCGCAATTTGGTGGAATGGCGCCTGCTggcggcgcac > 2:159672/1‑137 (MQ=255) gCACCCGGCAATCTTCCTCATTGCGCGATGCCTTCCAGCTTAA‑TTTCTTTATTTGCAATAGTTGCAGTTCATATCCGGGCTGACTCCAGACTGGTAGTGAAATGCGCAATTTTGTAGAATTGCGCCTCCTCGCGACCTCCCCa < 2:775952/143‑1 (MQ=255) gccGGCAACGTTTCTCATTGCGCGATGCCTTCCAGCTTAA‑TTTCTTTATTTGCAATAGTTGCAGTTCATACCCGGGCTGACTCCAGACGGGTAGTGAAATGCGCAATTTTGTAGAATTGCGCCTCCTCGCGACCTCCCCAGTg < 2:162748/142‑1 (MQ=255) ccGGCAATCTTCCTCATTGCGCGATGCCTTCCAGCTTAA‑TTTCTTTATTTGCAATAGTTGCAGTTCATATCCGGGCTGACTCCAGACTGGTATAGAATTGCGCAATTTTGTAGACTTGGGCCTCCTCGCGGCCTCCCCCGTGa > 2:323041/1‑143 (MQ=255) ggCAATCTTCCTCATTGCGCGATGCCTTCCAGCTTAA‑TTTCTTTATTTGCAATAGTTGCAGTTCATATCCGGGCTGACTCCAGACTGGTAGTGAAATGCGCAATTTTGTAGAATTGCGCCTCCTCGCGACCTCCCCAGTGAAt > 2:380345/1‑143 (MQ=255) aaTCTTCCTCCTTGCGCGATGCCGTCCAGCTTAA‑TTTCGTTATTTGCAATAGTTGCAGGTCATATCCGGGCTGACTCCAGCCTGGTAGTGAAATGCGCAATTTTGTAGAATTGCGCCTCCTCGCGACCTCCCCAGTGAATCTg < 2:334919/143‑1 (MQ=255) aTCTTCCTCATCGCGCGATGCCTTCCAGCTTAATTTTCGCTA‑TTGCTGTTTTTGCAGTTCATATCCGGGCTGACTCCAGACTGGTAGTGAAATGCGCAATTTTGTAGAATTGCGCCTCCTCGCGACCTCCCCAGTGAATCTGt < 2:779702/143‑1 (MQ=255) tCTTCCTCATTGCGCGATGCCTTCCAGCTTAA‑TTTCTTTATTTGCAATAGTTGCAGTTCATATCCGGGCTGACTCCAGACTGGTAGTGAAATGCGCAATTTTGTAGAATTGCGCCTCCTCGCGACCTCCCCAGTGAATCTGt‑t < 1:380345/143‑1 (MQ=255) ctcccTCATTGCGGGATGCCTTCCAGCTTAA‑TTTCTTTATTTGCAATAGGTGCAGTTCATACATGTGCTGACTCCTGACTGGTAGTGAAATGCGCAATTTTTTAGACTTGCGCCTCCTCGCGACCTCCCCAGTGAATCTGT‑Tg < 2:72277/140‑1 (MQ=255) ttCCTCATTGCGCGATGCCTTCCAGCTTAA‑TTTCTTTATTTGCAATAGTTGCAGTTCATATCCGGGCTGACTCCCGACTGGTAGTGAAATGCGCAATTTTGTAGAATTGCGCCTCCTCGCGACCTCCCCAGTGAATCTGT‑TGc > 1:580417/1‑143 (MQ=255) tCCTCATTGCGCGATGCCTTCCAGCTTAA‑TTTCTTTATGTGCAATAGGTGCAGTTCATATCCGGGCTGACTCCAGACTGGTAGTGAAATGCGCAATTTTGTAGAATTGCGCCTCCTCGCGACCTCCCCAGTGAATCTGT‑TGcc < 1:1005430/143‑1 (MQ=255) gcgcGATGCCTTCCAGCTTAA‑TTTCTTTATTTGCAATAGTTGCCGTTCATATCCGGGCTGACTCCAGACTGGTAGTGAAATGCGCAATTTTGTAGAATTGCGCCTCCTCTCGACCTCCCAAGTCTATCTGT‑TCCCTCtttttt > 1:24805/1‑143 (MQ=255) gcgcGATGCCTTCCAGCTTAA‑TTTCTTTATTTGCAATAGTTGCAGTTCATATCCGGGCTGACTCCAGACTGGTAGTGAAATGCGCAATTTTGTAGAATTGCGCCTCCTCGCGACCTCCCCAGTGAATCTGT‑TGCCTCAttttt < 2:853674/143‑1 (MQ=255) gcgcGATGCCTTCCAGCTTAA‑TTTCTTTATTTGCAATAGTTGCAGTTCATATCCGGGCTGACTCCAGACTGGTAGTGAAATGCGCAATTTTGTAGAATTGCGCCTCCTCGCGACCTCCCCAGTGAATCTGT‑TGCCTCAttttt < 1:526970/143‑1 (MQ=255) cgcgGTGCGTTCCAGCTTAA‑TTTCTTTATTTGCAATAGTTGCAGTTCATAACCGGGCTGACTCCAGACTGGTAGTGAAATGCGCAATTTTGTAGAATTGCGCCTCCTCGCGACCTCCCCAGTGAATCTGT‑TGCCTCAtctgtt < 2:738530/143‑6 (MQ=255) cgcgATGCCTTCCAGCTTAA‑TTTCTTTATTTGCAATAGTTGCAGTTCATATCCGGGCTGACTCCAGACTGGTAGTGAAATGCGCAATTTTGTAGAATTGCGCCTCCTCGCGACCTCCCCAGTGAATCTGT‑TGCCTCAtttttt < 1:614041/143‑1 (MQ=255) cgcgATGCCTTCCAGCTTAA‑TTTCTTTATTTGCAATAGTTGCAGTTCATATCCGGGCTGACTCCAGACTGGTAGTGAAATGCGCAATTTTGTAGAATTGCGCCTCCTCGCGACCTCCCCAGTGAATCTGT‑TGCCTCAtttttt < 1:913174/143‑1 (MQ=255) gcgATGCCTTCCAGCTTGA‑GTTCTTTCTTTGCGATGGTGGCAGTTCGTGTCCGGGCTGGCTCCAGACTTGTAGTGAGATGCGCAATTTTGTCGAATTGCGCCTTCTCGCGACCTCCCCAGTGAATCTGT‑TGCCTCATTTTTTa < 2:515574/143‑1 (MQ=255) gcgATGCCTTCCAGCTTAA‑TTTCTTTATTTGCAATAGTTGCAGTTCATATCCGGGCTGACTCCAGACTGGTAGTGAAATGCGCAATTTTGTAGAATTGCGCCTCCTCGCGACCTCCCCAGTGAATCTGT‑TGCCTCATTTTTTa > 1:790878/1‑143 (MQ=255) gATGCCTTCCAGCTTAA‑TTTCTTTATTTGCAATAGTTGCAGTTCATATCCGGGCTGACTCCAGACTGGTAGTGAAATGCGCAATTTTGTAGAATTGCGCCTCCTCGCGACTTCCCCTGTGTATATGT‑TGCCGCATCTtataaa > 1:271514/1‑141 (MQ=255) gCCTTCCAGCTTAA‑TTTCTTTATTTGCAATAGTTGCAGTTCATATCCGGGCTGACTCCAGACTGGTAGTGAAATGCGCAATTTTGTAGAATTGCGCCTCCTCGCGACCTCCCCAGTGAATCTGT‑TGCCTCATTTTTTACATAc > 1:873330/1‑143 (MQ=255) ttCCAGCTTAA‑TTTCTTTATTTGCAATAGTTGCAGTTCATATCCGGGCTGACTCCAGACTGGTAGTGAAATGCGCAATTTTGTAGAATTGCGCCTCCTCGCGACCTCCCCAGTGAATCTGT‑TGCCTCATTTTTTACATACTGc < 1:816181/143‑1 (MQ=255) ttCCAGCTTAA‑TTTCTTTATTTGCAATAGTTGCAGTTCATATCCGGGCTGACTCCAGACTGGTAGTGAAATGCGCAATTTTGTAGAATTGCGCCTCCTCGCGACCTCCCCAGTGAATCTGT‑TGCCTCATTTTTTACATACTGc > 1:194606/1‑143 (MQ=255) cAGCTTAA‑TTTCTTTATTTGCAATAGTTGCAGTTCATATCCGGGCTGACTCCAGACTGGTAGTGAAATGCGCAATTTTGTAGAATTGCGCCTCCTCGCGACCTCCCCAGTGAATCTGT‑TGCCTCATTTTTTACATACTGCGTa > 2:48232/1‑143 (MQ=255) aGCTTAA‑TTTCTTTATTTGCAATAGTTGCAGTTCATATCCGGGCTGACTCCAGACTGGTAGTGAAATGCGCAATTTTGTAGAATTGCGCCTCCTCGCGACCTCCCCAGTGAATCTGT‑TGCCTCATTTTTTACATACTGCGTAt < 2:530396/143‑1 (MQ=255) cTTAA‑TGTCTGTAGTTGCAATAGTTGCAGTTCATATCCGGGCTGACTCCAGACTGGTAGTGAAATGCGCAATTTTGTAGAATTGCGCCTCCTCGCGACCTCCCCAGTGAATCTGT‑TGCCTCATTTTTTACATACTGCGTATTc < 1:679944/143‑1 (MQ=255) ttAA‑TTTCTTTATTTGCAATAGTTGCAGTTCATATCCGGGCTGACTCCAGACTGGTAGTGAAATGCGCAATTTTGTAGAATTGCGCCTCCTCGCGACCTCCCCAGTGAATCTGT‑TGCCTCATTTTTTACATACTGCGTATTCg > 1:250354/1‑143 (MQ=255) tAA‑TTTTTTTATTTGCAATAGGTGCAGTTCATATCCGGGCTGACTCCAGACTGGTAGTGAAATGCGCAATTTTGTAGAATTGCGCCTCCTCGCGACCTCCCCAGTGAATCTGT‑TGCCTCATTTTTTACATACTGCGTATTCGa < 1:921213/143‑1 (MQ=255) aa‑TTTCTTTATTTGCAATAGTTGCAGTTCATATCCGGGCTGACTCCAGACTGGTAGTGAAATGCGCAATTTTGTAGAATTGCGCCTCCTCGCGACCTCCCCAGTGAATCTGT‑TGCCTCATTTTTTACATACTGCGTATTCGAc < 1:529980/143‑1 (MQ=255) atgttCTTTGTTTGCAATAGTTGCAGTTCATGTCCGTGCTGACTCCAGACTCGTAGTGAAATGCGCAATTTTGTAGAATTGCGCCTCCTCGCGACCTCCCCAGTGAATCTGT‑TGCCTCATTTTTTACATACTGCGTATTCGAc < 2:687562/140‑1 (MQ=255) cTTTATTTGCAATAGTTGCAGTTCATATCCGGGCTGACTCCAGCCTGGTAGTGAAATGCGCAATTTTGTAGAATTGCGCCTCCTCGCGACCTCACAAGTGAGGCTGT‑TGCTTCATTGCTTACATACTGCGTATTCGACTtctc > 2:829209/1‑143 (MQ=255) cAATAGTTGCAGTTCATATCCGGGCTGACTCCAGACTGGTAGTGAAATGCGCAATTTTGTAGAATTGCGCCTCCTCGCGACCTCCCCAGTGAATCTGT‑TGCCTCATTTTTTACATACTGCGTGTTCGACTTCTCCACCTGTTg > 1:133247/1‑143 (MQ=255) aaTAGTTGCAGTTCATATCCGGGCTGACTCCAGACTGGTAGTGAAATGCGCAATTTTGTAGAATTGCGCCTCCTCGCGACCTCCCCAGTGAATCTGT‑TGCCTCATTTTTTACATACTGCGTATTCGACTTCTCCACCTGTTgc > 1:626618/1‑143 (MQ=255) ggtGCAGTTCATATGCGGGCTGCCTCCAGACTGGTAGTGAAATGCGCAATTTTGTAGAATTGCGCCTCCTCGCGACCTCCCCAGTGAATCTGT‑TGCCTCATTTTTTACATACTGCGTATTCGACTTCTCCACCTGTTGCGCaa < 2:204338/141‑1 (MQ=255) ttGCAGTTCATATCCGGGCTGACTCCAGACTGGTAGTGAAATGCGCAATTTTGTAGAATTGCGCCTCCTCGCGACCTCCCCAGTGAATCTGT‑TGCCTCATTTTTTACATACTGCGTATTCGACTTCTCCACCTGTTGCGCAag < 1:870132/143‑1 (MQ=255) tccgtatCCGGGCTGACTCCCGTCTGGTAGTGACTTGCGCAATTTTGTAGAATTGCGCCTCCTCGCGACCCCCCCAGTGAATCTGT‑TGCCTCATTTTTTACATACTGCGTATTCGACTTCTCCACCTGTTGCGCAAGAGAAAc < 2:399106/139‑1 (MQ=255) tCATATCCGGGCTGACTCCAGACTGGTAGTGAAATGCGCAATTTTGTAGAATTGCGCCTCCTCGCGACCTCCCCAGTGAATCTGT‑TGCCTCATTTTTTACATACTGCGTATTCGACTTCTCCCCCTGTTGCGCCAGAGAAACt > 2:1091891/1‑143 (MQ=255) atatCCGGGCTGACTCCAGACTGGTTGTTAAATGTGTAATTTTGTAGAATTGCGCGTCCTCGCGGCCTCCCCAGTGAATGTGT‑TGCCTCATGTTTTACATACTGCGTATTCGACTTCTCCACCTGTTGCGCAAGAGAAACTgg < 1:722507/143‑1 (MQ=255) tCCAGACTGGTAGTGAAATGCGCAATTTTGTAGaattgcgcatttcactaccattctggagtcagcccggatatgaactgcaactattgcaaataaagaaattaagctggaaggcatcgcgcaatgggcgaggttgccgggtg < 1:164981‑M2/143‑111 (MQ=255) cAGACTGGTAGTGAAATGCGCAATTTTGTAGaattgcgcatttcactaccagtctggagtcagcccggatatgaactgcaactattgcaaataaagaaattaagctggaaggcatcgcgcaatgaggaagattgccgggtgct < 1:960621‑M2/143‑113 (MQ=255) aGACTGGTAGTGAAATGCGCAATTTTGTAGaattgcgcatttcactaccagtctggagtcagcccggatatgaactgcaactattgcaaatacagaaattaagctggaaggcatcgcgcaatgaggaaaattgccgcgaactg < 2:71342‑M2/143‑114 (MQ=255) aCTGGTAGTGAAATGCGGAATTTTGCAGAATTGCGCCTCCGCGCGACCGCCCCAGTGAATCTGT‑TGCCTCATTTTTTACATACTGCGTATTCGACTTCTCCACCTGTTGCGCAAGAGAAACTGGGTTTATTCATTTTTGCGAg < 1:27878/143‑1 (MQ=255) cTGGTAGTGAAATGCGCAATTTTGTAGAATTGCGCGTCCTCGCGCCCGCCCCAGTGAAGCTGT‑TGCCTCATTTTGCACAGACTGCGTATTCGAGTTCTCCACCTGTTGCGCAAGAGAAACTGGGTTTATTCATTTTTGCGAgg < 1:55132/143‑1 (MQ=255) gTAGTGAAATGCGCAATTTTGTAGAATTGCGCCTCCTCGCGACCTCCCCAGTGAATCTGT‑TGCCTCATTTTTTACATACTGCGTATTCGACTTCTCCACCTGTTGCGCAAGAGAAACTGGGTTTATTCATTTTTGCGAGGCCg > 1:16387/1‑143 (MQ=255) tAGTGAAATGCGCAATTTTGTAGAATTGCGCCTCCTCGCGACCTCCCCAGTGAATCTGT‑TGCCTCATTTTTTACATACTGCGTATTCGACTTCTCCACCTGTTGCGCAAGAGAAACTGGGTTTATTCATTTTTGCGAGGCCGa < 1:323041/143‑1 (MQ=255) gTGAAATGCGCAATTTTGTAGAATTGCGCCTCCTCGCGACCTCCCCAGTGAATCTGT‑TGCCTCATTTTTTACATACTGCGTATTCGACTTCTCCACCTCTCGCGCAATTTAAACTGGTTTTATTCATTTTTGCGAGGCCGAct < 1:869137/143‑1 (MQ=255) aTGCGCAATTTTGTAGAATTGCGCCTCCTCGCGACCTCCCCAGTGAATCTGT‑TGCCTCATTTTTTACATACTGCGTATTCGACTTCTCCACCTGTTGCGCAAGAGAAACTGGGTGTATTCACTTTTGCGGGGCCGACctcctt > 2:1056184/1‑143 (MQ=255) aTGCGCAATGTTGTTGACCTCCCCCTCCCCGCGACCTCCCCAGTGAATCTGT‑TGCCTCATTTTTTACATACTGCGTATTCGACTTCTCCACCTGTTGCGCAAGAGAAACTGGGTTTATTCATTTTTGCGAGGCCGACttcttt < 1:31924/143‑1 (MQ=255) gcgcAATTTTGTAGAATTGCGCCTCCTCGCGACCTCCCCAGTGAATCTGT‑TGCCTGATTTTTTACATACTGCGTATTCGACTTCTCCACCTGTTGCGCAAGAGAAACTGGGTTTATTCATTTTTGCGAGGCCGACttctttct < 2:294124/143‑1 (MQ=255) aTTTTGTAGAATTGCGCCTCCTCGCGCCCTCGACAGCTCGT‑TGTGTGCCTCATTTTTTACATACTGCGTATTCGACTTCTCCACCTGTTGCGCAAGAGAAACTGGGTTTATTCATTTTTGCGAGGCCGACTTCTTTCTGGACa < 2:1070483/143‑1 (MQ=255) ttttGTAGAATTGCGCCTCCTCGCGACCTCCCCAGTGAATCTGT‑TGCCTCATTTTTTACATACTGCGTATTCGACTTCTCCACCTGTTGCGCAAGAGAAACTGGGTTTATTCATTTTTGCGAGGCCGACTTCTTTCTGGACAg < 2:790878/143‑1 (MQ=255) | CTACGATTGCTTTTTACTGTCAGCACCCGGCAATCTTCCTCATTGCGCGATGCCTTCCAGCTTAA‑TTTCTTTATTTGCAATAGTTGCAGTTCATATCCGGGCTGACTCCAGACTGGTAGTGAAATGCGCAATTTTGTAGAATTGCGCCTCCTCGCGACCTCCCCAGTGAATCTGT‑TGCCTCATTTTTTACATACTGCGTATTCGACTTCTCCACCTGTTGCGCAAGAGAAACTGGGTTTATTCATTTTTGCGAGGCCGACTTCTTTCTGGACAG > NC_000913/3700283‑3700556 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |