New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	3995709 =	49 (0.870)	3 (0.060)	3/250	NT	6.4%	coding (127/708 nt)	yigA	conserved protein YigA
	?	NC_000913	3995732 =	42 (0.790)					coding (150/708 nt)	yigA	conserved protein YigA

AACCAGGGGAAGAACTGCAGGAAACACTCACGGAGCTTGATGACCGGGCGGTTGTCGATTATCTGATTAAAAATCCTGAGTTTTTTATCCGTAATGCGCGCGCAGTAGAAGCGATACGTGTGC‑CGCATCCGGTACGCGGCACCGTTTCGTTGGTCGAGTGGCACATGGCCCGCGCACGTAATCATATTCATGTTCTGGAAGAGAACATGGCGCTGTTGATGGAACAGGCTATCGCCAACGAAGGCCTGTTTTATCGCCTACTCTACCTGCAGCGCAGTCTCA  >  NC_000913/3995590‑3995871                                                                                                                                                |                                                                                                                                            aaCCAGGGGAAGAACTGCAGGAAACACTCACGGAGCTTGATGACCGGGCGGTTGTCGATTATCTGATTAAAAATCCTGAGTTTTTTATCCGTAATGCGCGCGCAGTAGAAGCGATACGTGTGC‑CGCATCCGGTACGCGGCAcc                                                                                                                                             >  1:217805/1‑143 (MQ=255)  aCCAGGGGAAGAACTGCAGGAAACACTCACGGAGCTTGATGACCGGGCGGTTGTCGATTATCTGATTAAAAATCCTGAGTTTTTTATCCGTAATGCGCGCGCCGTAGACGCGATACGTGTGC‑CGCATCCGGTACGCGGCACCg                                                                                                                                            >  2:401178/1‑143 (MQ=255)        ggAAGAACTGCAGGAAACACTCACGGAGCTTGATGACCGGGCGGTTGTCGATTATCTGATTAAACATCCTGAGTTTTTTATCCGTAATGCGCGCGCAGTAGAAGCGATACGTGTGC‑CGCATCCGGTACGCGGCACCGTTTCGt                                                                                                                                      >  1:328556/1‑143 (MQ=255)          aagaaCTGCAGGAACCACTCACGGACCTTGATGACCGGGCGGTTGTCGATTATCTGATTAAAAATCCTGAGTTTTTTATCCGTAATGCGCGCGCAGTAGAAGCGATACGTGTGC‑CGCATCCGGTACGCGGCACCGTTTCGTTg                                                                                                                                    <  1:951085/143‑1 (MQ=255)          aaacaggccttcgttggcgatagcctgttccatcaacagcgccatgttctcttccagaacatgaatatgattacgtgcgcgggccatgtgccactcgaccaacgatacgtGTGC‑CGCATCCGGTACGCGGCACCGTTTCGTTg                                                                                                                                    >  2:503223‑M1/111‑143 (MQ=255)            gaaCTGCAGGAAACACTCACGGAGCTTGATGACCGGGCGGTTGTCGATTATCTGATTAAAAATCCTGAGTTTTTTATCCGTAATGCGCGCGCAGTAGAAGCGATACGTGTGC‑CGCATCCGGTACGCGGCACCGTTTCGTTGGt                                                                                                                                  >  1:945520/1‑143 (MQ=255)            caaCTGGAGGAAACACTCACGGAGCTTGATGACCGGGCGGTTGTCGATTATCTGCGTAAAAATCCTGAGTTTTTTATCCGTAATGCGCGCGCAGTAGAAGCGATACGTGTGC‑CGCATCCGGTACGCGGCACCGTTTCGTTGGt                                                                                                                                  <  1:527409/142‑1 (MQ=255)             gcaggccctcgttgggtacagcctgttcactcaaccgcgcgatgttctcttccagaacatgaatatgattacgtgcgcgggccatgtgccactcgaccaacgaaacgGTGC‑CGCATCCGGTACGCGGCACCGTTTCGTTGGTc                                                                                                                                 >  1:201970‑M1/108‑143 (MQ=255)             aaCTGCAGGAAACACTCACGGAGCTTGATGACCGGGCGGTTGTCGATTATCTGATTAAAAATCCTGAGTTTTTTATCCGTAATGCGCGCGCAGTAGAAGCGATACGTGTGC‑CGCATCCGGTACGCGGCACCGTTTCGTTGGTc                                                                                                                                 >  1:53025/1‑143 (MQ=255)                tGCAGGAAACACTCACGGAGCTTGATGACCGGGCGGTTGTCGATTATCTGATTAAAAATCCTGAGTTTTTTATCCGTAATGCGCGCGCAGTAGAAGCGATACGTGTGC‑CGCATCCGGTACGCGGCACGGTTTCGTTGGGCGAg                                                                                                                              >  2:199601/1‑143 (MQ=255)                tGCAGGAAACACTCACGGAGCTTGATGACCGGGCGGTTGTCGATTATCTGATTAAAAATCCTGAGTTTTTTATCCGTAATGCGCGCGCAGTAGAAGCGATACGTGTGC‑CGCATCCGGTACGCGGCACCGTTTCGTTGGTGGAg                                                                                                                              >  1:780366/1‑143 (MQ=255)                   aGGACACACTCACGGAGCTTGATGACCGGGCGGTTGTCGATTATCTGATTAAAAATCCTGAGTTTTTTATCCGTAATGCGCGCGCAGTAGAAGCGATACGTGTGC‑CGCATCCGGTACGCGGCACCGTTTCGTTGGTCGAGTgg                                                                                                                           <  2:1036215/143‑1 (MQ=255)                    ttcgttggcgatagcctgttccatcaacagcgccatgttctcttccagaacatgaatatgattacgtgcgcgggcgatgtgccactcgaccaacgaaacgGTGC‑CGCATCCGGTACGCGGCACCGTTTCGTTGGTCGAGTGGc                                                                                                                          >  1:719435‑M1/101‑143 (MQ=255)                       atcacTCCCCGCGCTTGACGACCGGGCGGTTGTCGATCATCTGATTAAAAATCCTGAGTTTTTTATCCGTAGTGCGCGCGTAGTAGAAGCGATACGTGTGC‑CGCATCCGGTACGCGGCACCGTTTCGTTGGTCGAGTGGcaca                                                                                                                       <  1:1078761/141‑1 (MQ=255)                          acTCACGGAGCTTGATGACCGGGCGGTTGTCGATTATCTGATTAAAAATCCTGAGTTTTTTATCCGTAATGCGCGCGCAGTAGAAGCGATACGTGTGC‑CGCATCCGGTACGCGGCACCGTTTCGTTGGTGGAGTGGCACGTgg                                                                                                                    >  1:90488/1‑143 (MQ=255)                            tCACGGAGCTTGATGACCGGGCGGTTGTCGATTATCTGATTAAAAATCCTGAGTTTTTTATCCGTAATGCGCGCGCAGTAGAAGCGATACGTGTGC‑CGCATCCGGTACGCGGCACCGTTTTGTTGGTCGAGTGGCACATGGcc                                                                                                                  >  2:1087690/1‑143 (MQ=255)                                  aGCTTGATGACCGGGCGGTTGTCGATTATCTGATTAAAAATCCTGAGTTTTTTATCCGTAATGCGCGCGCAGAAGCAACGAGACGTGTGC‑AGAAACAGGCACGCGGCACCGTTTCGTTGAGCGCGTGGCACATGGCCCgcgcc                                                                                                            >  2:233302/1‑142 (MQ=255)                                     ttGATGACCGGGCGGTTGTCGATTATCTGATTAAAAATCCTGAGTTTTTTATCCGTAATGCGCGCGCAGTAGAAGCGATACGTGTGC‑CGCATCCGGCACGCGGCACCGTTTCGTTGGTCGAGTGGCACATGACCCGCGCACgc                                                                                                         >  2:145905/1‑142 (MQ=255)                                       gatgaCCGGGCTGTTGTCGATTATCTGATTAAAAATCCTGAGTTTTTTATCCGTAATGCGCGCGCAGTAGAAGCGATACGTGTGC‑CGCATCCGGTACGCGGCACCGTTTCGTTGGTCGAGTGGCACATGGCCCGCGCACGTaa                                                                                                       <  1:622107/143‑1 (MQ=255)                                       gaggcccGGGGGGCTGCCGATTCTGTGATTAAAAATCCTGAGTTTTTTCTCCGTAATGCGCGCGCAGTAGAAGCGAGACGTGTGC‑CGCATCCGGTACGCGGCACCGTTTCGTTGGTCGAGTGGCACATGGCCCGCGCACGTaa                                                                                                       <  1:1048207/138‑1 (MQ=255)                                            ccGGGCGGTTGTCGATTATCTGATTAAAAATCCTGAGTTTTTTATCCGTAATGCGCGCGCAGTAGAAGCGATACGTGTGC‑CGCATCCGGTACGCGGCACCGTTTCGTTGGTCGAGTGGCACATGGCCCGCGCACGTAATCata                                                                                                  >  1:706938/1‑143 (MQ=255)                                                    ttGTCGATTATCTGATTAAAAATCCTGAGTTTTTTATCCGTAATGCGCGCGCAGTAGAAGCGATACGTGTGC‑CGCATCCGGTACGCGGCACCGTTTCGTTGGTCGAGTGGCACATGGCCCGCGCACGTAATCCTATTCATGtt                                                                                          >  1:1094327/1‑143 (MQ=255)                                                         gATTATCTGATTAAAAATCCTGAGTTTTTTATCCGTAATGCGCGCGCAGTAGAAGCGATACGTGTGC‑CGCATCCGGTACGCGGCACCGTTTCGTTGGTCGAGTGGCACATGGCCCGCGCACGTAATCATATTCATGTTCTgta                                                                                     >  2:3069/1‑141 (MQ=255)                                                          aTTATCTGATTAAAAATCCTGAGTTTTTTATCCGTAATGCGCGCGCAGTAGAAGCGATACGTGTGC‑CGCATCCGGTACGCGGCACCGTTTCGTTGGTCGAGTGGCACATGGCCCGCGCACGTAATCATATTCATGTTCTGGaa                                                                                    <  1:593756/143‑1 (MQ=255)                                                            tATCGGATGAGAAATCCTGAGTTTTTTATCCGTAATGCGCGCGCAGTAGAGGCGATACGTGTGC‑CGCATCCGGTACGCGGCACCGTTTCGTTGGTCGAGTGGCACATGGCCCGCGCACGTAATCATATTCATGTTCTGGAaga                                                                                  <  2:112389/143‑1 (MQ=255)                                                               cTGATTAAAAATCCTGAGTTTTTTATCCGTAATGCGCGCGCAGTAGAAGCGATATGTGTGC‑CGCATCCGGTACGCGGCACCGTTTCGTTGGTCGAGTGGCACATGGCCCGCGCCCGTAATCATATTCCTGTTCTGGCAgagac                                                                               >  2:898822/1‑142 (MQ=255)                                                                 gATTAAAAATCCTGAGTTTTTTATCCGTAATGCGCGCGCAGTAGAAGCGATACGTGTGC‑CGCATCCGGTACGCGGCACCGTTTCGTTGGTCGAGTGGCACATGGCCCGCGCACGTAATCGTATTCATGTTCTGGAAGAGAACa                                                                             >  1:892319/1‑143 (MQ=255)                                                                     aaaaaTCCTGAGTTTTTTATCCGTAATGCGCGCGCAGTAGAAGCGATACGTTTGC‑CGCATCCGGTACGCGGCACCGTTTCGTTGGTCGAGTGGCACATGGCCCGCGCACGTAATCATATTCATGTTCTGGAAGAGAACATGgc                                                                         >  1:1051360/1‑143 (MQ=255)                                                                      aaaaTCCTGAGTTTTTTATCCGTAATGCGCGCGCAGTAGCAGCGATACGTGTGC‑CGCATCCGGTACGCGGCACCGTTTCGTTGGTCGAGTGGCACATGGCCCGCGCACGTAATCCTATTCATCTCCTGGAAGGGCACATGgcg                                                                        >  2:741391/1‑143 (MQ=255)                                                                       aaaTCCTGAGTTTTTTATCCGTAAGGCGCGCGCAGTAGAAGCGATACGTGTGC‑CGCATCCGGTACGCGGCACCGTTTCGTTGGTCGAGTGGCACATGGCCCGCGCACGTAATCATATTCATGTCCTTGAAGAGAACATGgcgc                                                                       <  2:969805/143‑1 (MQ=255)                                                                       aaaTCCTGAGTGTTTTATCCGTAATGCGCGCGCAGTAGAAGCGATACGGGTGC‑CGCATCCGGTACGCGGCACCGTTTCGTTGGTCGAGTGGCACATGGCCCGCGCACGTAATCATATTCATGTTCTGGAAGAGAACATGgcgc                                                                       <  1:485358/143‑1 (MQ=255)                                                                          tCCTGGGGTTTTTATCCGTAATGCGCGCGCAGTAGAAGCGATACGTGTGC‑CGCATCCGGTACGCGGCACCGTTTCGTTGGTCGAGTGGCACATGGCCCGCGCACGTAATCATATTCATGTTCTGGAAGAGAACATGGCGCTGt                                                                    <  1:734309/143‑1 (MQ=255)                                                                             tGAGTTTTTTATCCGTAATGCGCGCGCAGTAGAAGCGATACGTGTGC‑CGCATCCGGTACGCGGCACCGTTTCGTTGGTCGAGTGGCCCATGGCCCGCGCACGTAATCATATTCATGTTCTGGAAAAGAACATGGGGCTGTTGa                                                                 >  2:380077/1‑143 (MQ=255)                                                                             tGAGTTTTTTATCCGTAATGCGCGCGCAGTAGAAGCGATACGTGTGC‑CGCATCCGGTACGCGGCACCGTTTCGTTGGTCGAGTGGCACATGGCCCGCGCACGTAATCATATTCATGTTCTGGAAGAGAACATGGCGCTGTTGa                                                                 <  1:472381/143‑1 (MQ=255)                                                                              gtcttgtttATCCGTAATGCGCGCGCAGTAGAAGCGATACGTGCGC‑CGCATCCGGTACGCGGCACCGTTTCGTTGGTCGAGTGGCACATGGCCCGCGCACGTAATCATATTCATGTTCTGGAAGAGAACATGGCGCTGTTGAt                                                                <  1:196473/137‑1 (MQ=255)                                                                              gggTTTTTTATCGGTACGGCGCGCGCAGTAGAGGCGAGACGTGTGC‑CGCATCCGGTACGCGGCACCGTTTCGTTGGTCGAGTGGCACATGGCCCGCGCACGTAATCATATTCATGTTCTGGAAGAGAACATGGCGCTGTTGAt                                                                <  2:584472/141‑1 (MQ=255)                                                                              gAGTTTTTTATCCGTAATGCGCGCGCAGTAGAAGCGATACGTGTGC‑CGCATCCGGTACGCGGCACCGTTTCGTTGGTCGAGTGGCACATGGCCCGCGCACGTAATCATATTCATGTTCTGGAAGAGAACATGGCGCTGTTGAt                                                                <  1:428283/143‑1 (MQ=255)                                                                               aGTTTTTTCGCGGGAATGCGAGGGCAGTGGAAGGGATACGGGTGC‑GGCAGCCGGTACGCGGCACCGTTTCGTTGGTCGGGTGGCACATGGCCCGCGCACGTAATCATATTCATGTTCTGGAAGAGAACATGGCGCTGTTGATg                                                               <  1:227683/143‑1 (MQ=255)                                                                               aGTTTCTTATCCGTAATGCGCGCGCAGTAGAAGCGATACGTGTGC‑CGCATCCGGTACGCGGCACCGTTTCGTTGGTCGAGTGGCACATGGCCCGCGCACGTAATCATATTCATGTTCTGGAAGAGAACATGGCGCTGTTGATg                                                               <  1:542413/143‑1 (MQ=255)                                                                                 ttttttATCCGTAATGCGCGCGCAGTAGAAGCGATACGTGTGC‑CGCATCCGGTACGCGGCACCGTTTCGTTGGTCGAGTGGCACATGGCCCGCGCACACCAGCATATTCATGTTCTTGAAGAGAACATGGCGCCGTTGATGGa                                                             >  2:272715/1‑143 (MQ=255)                                                                                 gtttttATCCGTAATGCGCGCGCAGTAGAAGCGATACGTGTGC‑CGCATCCGGTACGCGGCACCGTATCGTTGGTCGAGTGGCACATGGCCCGCGCACGTAATCATATTCATGTTCTGGAGGAGAACATGGCGCTGTTGATGGa                                                             >  1:540140/2‑143 (MQ=255)                                                                                      tATCCGTAGTGCGCGCGCAGTAGAGGCTATACGTGGGC‑CGCATCCGGTACGCGGCACCGTTTCGTTGGTCGAGTGGCACATGGCCCGCGCACGTAATCATATTCATGTTCTGGAAGAGAACATGGCGCTGTTGATGGAACAgg                                                        <  2:800177/143‑1 (MQ=255)                                                                                      tATCCGTAATGCGCGCGCAGTAGAAGCGATACGTGTGC‑CGCATCCGGTACGCGGCACCGTTTCGTTGGTCGAGTGGCACATGGCCCGCGCACGTAATCATATTCATGTTCTGGAAGAGAACATGGCGCTGTTGATGGAACAgg                                                        >  2:85137/1‑143 (MQ=255)                                                                                          ggTAATGCGCGCGCAGTCGAGGCTGTACTTCAGCACGTTTTC‑GTACTCGTCACCGTTTCGTTGGTCGAGTGGCACATGGCCCGCGGACGTAATCATATTCATGTTCTGGAAGAGAACATGGCGCTGTTGATGGAACAGGCTAt                                                    <  2:1071021/142‑1 (MQ=255)                                                                                                     gccactcgaccaacgaaacggtgccgcgtaccggatgcggcacCGTTTCGTTGGTCGAGTGGCACATCGCCCGCGCACGTAATCATATTCATGTTCTGGAAGAGAACATGGCGCTGTTGATGGAACAGGCTATCGCCAACGaa                                          >  1:719435‑M2/44‑143 (MQ=255)                                                                                                            gaccaacgaaacggtgccgcgtaccggatgcggcacCGTTTCGTTGGTCGAGTGGCACATGGCCCGCGCACGTAATCATATTCATGTTCTGGAAGAGAACATCGCGCGGTTGAGTGAACAGGCTGTACCCAACGAGGGCCtgc                                   >  1:201970‑M2/37‑142 (MQ=255)                                                                                                            gAAGCCATACGCGGGC‑CGCATCCGGTACGCGGCCCCGTTTCGTTGGTCGAGTGGCACATGGCCCGCGCACGTAATCATATTCATGTTCTGGAAGAGAACATGGCGCTGTTGATGGAACAGGCTATCGCCAACGAAGGCCTGtt                                  <  2:911483/143‑1 (MQ=255)                                                                                                              caacgaaacggtgccgcgtaccggatgcggcacaCGTATCGTTGGTCGAGTGGCACATGGCCCGCGCACGTAATCATATTCATGTTCTGGAAGAGAACATGGCGCTGTTGATGGAACAGGCTATCGCCAACGAAGGCCTGttt                                 >  2:503223‑M2/35‑143 (MQ=255)                                                                                                                 gATACGTTTGC‑CGCATCCGGTACGTGGTACCGTTTCGTGTGTCGAGTGGCACATGGCCCGCGTATGTTATCATATTCATGTTCTGGAAGAGAACATGGCGCTGGTGATGGAACAGGCTATCGCCAACGAAGGCCTGTTTTATc                             <  1:122178/143‑1 (MQ=255)                                                                                                                             CGCATCCGGTACGCGGCACCGTTTCGTTGGTCGAGTGGCACATGGCCCGCGCACGTAATCATAGTCATGTTCTGGCAGAGAACATGGCGCGGTTGATGGAACAGGCTATCGCCAACGAAGGCCTGGTTTGTCGCCTACGCTAc                  <  2:18210‑M1/143‑1 (MQ=255)                                                                                                                                   cGGTACGCGGCACCGTTTCGTTGGTCGAGTGGCACATGGCCCGCGCACGTAATCATATTCATGTTCTGGAAGAGAACATGGCGCTGTTGATGGAACAGGCTATCGCCAACGAAGGCCTGTTTTATCGCCTGCTCTACCTGccg            >  1:728306/1‑141 (MQ=255)                                                                                                                                    ggTACGCGGCACCGTTTCGTTGGTCGAGTGGCACATGGCCCGCGCACGTAATCATATTCATGTTCTGGAAGAGAACATGGCGCTGTTGATGGAACAGGCTATCGCCAACGAAGGCCTGTTTTATCTCCTCCTCTACCagcagc           >  2:579173/1‑143 (MQ=255)                                                                                                                                    ggTACGCGGCACCGTTTCGTTGGTCGAGTGGCACATGGCCCGCGCACGTAATCATATTCATGTTCTGGAAGAGAACATGGCGCTGTTGATGGAACAGGCGATCGCCAACGAAGGCCTGTATTATCGCCTACTCTACCTGCAgc           >  2:98760/1‑143 (MQ=255)                                                                                                                                    ggTACGCGGCACCGTTTCGATGGTCGAGTGGCACATGGCCCGCGCACGTAATAAAATTCATGTTCTGGAAGAGAACATGGCGCTGTTGCTGGAACAGGCTATCGACAACGAAGGCCTGTATGATCGCCTACTCTACCGGcgac           >  2:98770/1‑140 (MQ=255)                                                                                                                                         gcggcacCGTTTCGTTGGTCGAGTGGCACATGGCCCGCGCACGTAATCATATTCATGTTCTGGAAGAGAACATGGCGCTGTTGATGGAACAGGCTATCGCCAACGAAGCCCGGTTTTATCGCCCACTCTGCCTgcagagccgc      >  2:977978‑M2/8‑140 (MQ=255)                                                                                                                                           ggcacCGTTTCGGTGTGCGCGTTCCCCGTAGCCCTCGCAGGTACTCATGTGCATGTTCTGGAAGAGAACATGGCGCTGTTGATGGAACAGGCTATCGCCAACGAAGGCCTGTTTTATCGCCTACTCTACCTGCAGCGCAGtct    <  2:1065929‑M2/138‑1 (MQ=255)                                                                                                                                             cacCGTTTCGTTGGTCGAGTGGCACATGGCCCGCGCACGTAATCATATTCATGTTCTGGAAGAGAACATGGCGCCGTTGATGGAACAGGCTATCGCCAACGAAGGCCTGTTTTATCGCCTCCTCTACCTGCAgcccagagcaa  >  2:614171‑M2/4‑138 (MQ=255)                                                                                                                                                |                                                                                                                                            AACCAGGGGAAGAACTGCAGGAAACACTCACGGAGCTTGATGACCGGGCGGTTGTCGATTATCTGATTAAAAATCCTGAGTTTTTTATCCGTAATGCGCGCGCAGTAGAAGCGATACGTGTGC‑CGCATCCGGTACGCGGCACCGTTTCGTTGGTCGAGTGGCACATGGCCCGCGCACGTAATCATATTCATGTTCTGGAAGAGAACATGGCGCTGTTGATGGAACAGGCTATCGCCAACGAAGGCCTGTTTTATCGCCTACTCTACCTGCAGCGCAGTCTCA  >  NC_000913/3995590‑3995871

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.