Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_000913 4,497,953 A→T 6.4% intergenic (+13/‑319) intB → / → insC‑6 KpLE2 phage‑like element; putative integrase/KpLE2 phage‑like element; IS2 insertion element repressor InsA

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009134,497,9530AT 6.4% 219.1 / 6.7 79intergenic (+13/‑319)intB/insC‑6KpLE2 phage‑like element; putative integrase/KpLE2 phage‑like element; IS2 insertion element repressor InsA
Reads supporting (aligned to +/- strand):  ref base A (41/32);  new base T (2/3);  total (43/36)
Fisher's exact test for biased strand distribution p-value = 6.52e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.97e-01

CATAAAGCAGAGCATCTGGAAGAACGGCGATTGATGCTACAGTGGTGGGCCGATTTTCTGGATGTAAACAGAGAAAGGTTTATCAGTCCATTTGAATATGCAAAGATTAATAATCCATTAAAACAGTAATCATCCCGGGCAAATGCCCGGGAATTATTCTAGGATTATTTTCTTTGTTAAAAAAGACAAACGGTATTAACTGATGTATTTACTATTTACCGCTCCCTGCAGGGGGGATTATCAGAATCCGCGGTTATTCATTATTTATATACATTCAATAAAAA  >  NC_000913/4497812‑4498095
                                                                                                                                             |                                                                                                                                              
gaTAAGGCAGAGCATCTGGAAGAACGGCGATTGATGCTACAGTGGTGGGCCGATTTTCTGGATGTAAACAGAGAAAGGTTTATCAGTCCATTTGAATATGTAAAGATTAATAATCCATTAAAACAGTAATCATCCCGGGCaaa                                                                                                                                               <  1:1053201/142‑1 (MQ=255)
cATAAAGCAGAGCATCTGGAAGAACGGCGATTGATGCTACAGTGGTGGGCCGATTTTCTGGATGTAAACAGAGAAAGGTTTATCAGTCCATTTGAAAATGCAAAGATTAATAATCCATTAAAACAGTAATCATCCCGGGCaaa                                                                                                                                               >  1:1095844/1‑143 (MQ=255)
 aTAAAGCAGAGCATCTGGAAGAACGGCGATTGATGCTACAGTGGTGGGCCGATTTTCTGGATGTAAACAGAGAAAGGTTTATCAGTCCATTTGAATATGCAAAGATTAATAATCCATTAAAACAGTAATCATCCCGGGCCAAt                                                                                                                                              >  1:532507/1‑143 (MQ=255)
 aTAAAGCAGAGCATCTGGAAGAACGGCGATTGATGCTACAGTGGTGGGCCGATTTTCTGGATGTAAACAGAGAAAGGTTTATCAGTCCATTTGAATATGCAAAGATTAATAATCCATTAAAACAGTAATCATCCCGGGCAAAt                                                                                                                                              >  2:734868/1‑143 (MQ=255)
 aTAAAGCAGAGCATCTGGAAGAACGGCGATTGATGCTACAGTGGTGGGCCGATTTTCTGGATGTAAACAGAGAAAGGTTTATCAGTCCATTTGAATATGCAAAGATTAATAATCCATTAAAACAGTAATCATCCCGGGCAAAt                                                                                                                                              >  1:527270/1‑143 (MQ=255)
  tAAAGCAGAGCATCTGGAAGAACGGCGATTGATGCTACAGTGGTGGGCCGATTTTCTGGATGTAAACAGAGAAAGGTTTATCAGTCCATTTGAATATGCAAAGATTAATAATCCATTAAAACAGTAATCATCCCGGGCAAATg                                                                                                                                             >  1:302124/1‑143 (MQ=255)
       cAGAGCATCTGGAAGAACGGCGATTGATGCTAGAGTGGTGGGCTGATTTTCAGGATGTAGACAGAGAAAGGTTTATCAGTCCATTTGAATATGCAAAGATTAATAATCCATTAAAACAGTAATCATCCCGGGCAAAGGCCCgg                                                                                                                                        >  2:581975/1‑143 (MQ=255)
       cAGAGCATCTGGAAGAACGGCGATTGATGCTACAGTGGTGGGCCGATTTTCTGGATGTAAACAGAGAAAGGTTTATCAGTCCATTTGAATATGCAAAGATTAATAATCCATTAAAACAGTAATCATCCCGGGCAAATGCCCgg                                                                                                                                        <  2:459168/143‑1 (MQ=255)
        agagCATCTGGAAGAACGGCGATTGATGCTACAGTGGTGGGCCGATTTTCTGGATGTAAACAGAGAAAGGTTTATCAGTCCATTTGAATATGCAAAGATTAATAATCCATTAAAACAGTAATCATCCCGGGCAAATGCCCggg                                                                                                                                       >  1:618871/1‑143 (MQ=255)
          agCATCTGGAAGAACGGCGATTGATGCTACAGTGGTGGGCCGATTTTCTGGATGTAAACAGAGAAAGGTTTATCAGTCCATTTGAATATGCAAAGATTAATAATCCATTAAAACAGTAATCATCCCGGGCATTTGCCCGGGat                                                                                                                                     <  1:992391/143‑2 (MQ=255)
           gCACCTGGAAGAACGGCGAGTGCTGCTACAGTGGTGGGCCGAGTTTCTGGATGTAAACAGAGAAAGGTTTATCAGTCCATTTGAATATGCAAAGATTAATAATCCATTAAAACAGTAATCATCCCGGGCATTTGCCCGGGatg                                                                                                                                    <  1:1095202/143‑3 (MQ=255)
              tCTGGAAGAGCGGCGATTGATGCTACAGTGGTGGGCCGGTTTTCTGGATGTAAGCAGAGAAAGGTTTATCAGTCAATTTGAATATGCAAAGATTAATAATCCATTAAAACAGTAATCATCACGGGAAAATGCGCGGGAagtat                                                                                                                                 >  2:1063632/1‑143 (MQ=255)
                 ggAAGAACGGCGATTGATGCTACAGTGGTGGGCCGATTTTCTGGATGTAAACAGAGAAAGGTTTATCAGTCCATTTGAATATGCAAAGATTAATAATCCATTAAAACAGTAATCATCCCGGGCCAATGCCCGGGCATTATTCt                                                                                                                              >  1:204793/1‑143 (MQ=255)
                     caccGGCGATTTATGCTACAGTGGTGGGCCGATTTTCTAGATGTAAACAGAGAAAGGTTTATCAGTCCATTTGAATATGCAAAGATTAATAATCCATTAAAACAGTAATCATCCCGGGCAAATGCCCGGGAATTATTCTAGGa                                                                                                                          <  1:158702/140‑1 (MQ=255)
                        cGGCGATTGATGCTACAGTGGTGGGCCGATTTTCTGGATGTAAACAGAGAAAGGTTTATCAGTCCATTTGAATATGCAAAGATTAATAATCCATTAAAACAGTAATCATCCCGGGCAAATGCCCGGGAATTATTCTAGGatta                                                                                                                       >  2:475933/1‑143 (MQ=255)
                         ggCGATTGATGCTACAGTGGTGGGCCGATTTTCTGGATGTAAACAGAGAAAGGTTTATCAGTCCATTTGAATATGCAAAGATTCATAATCCATTAAAACAGTAATCATCCCGGGCAAATGCCCGGGAATTATTATAGGattat                                                                                                                      >  2:956956/1‑143 (MQ=255)
                               tGATGCTACAGTGGTGGGCCGATTTTCTGGATGTAAACAGAGAAAGGTTTATCAGTCCATTTGAATATGCAAAGATTAATAATCCATTAAAACAGTAATCATCCCGGGCAAATGCCCGGGAATTATTCTAGGATTATTTTCtt                                                                                                                <  1:1014228/143‑1 (MQ=255)
                               tGATGCTACAGTGGTGGGCCGATTTTCTGGATGTAAACAGAGAAAGGTTTATCAGTCCATTTGAATATGCAAAGATTAATAATCCATTAAAACAGTAATCATCCCGGGCAAATGCCCGGGAATTATTCTAGGATTATTTTCtt                                                                                                                <  2:608385/143‑1 (MQ=255)
                               tGAGGCTGCAGTGGTGGGACTATTTTCTGCAGAGAAACAGAGAAAGGTTTATCAGTCCATTTCAACATGCCAAGATTAATAATCTATTAAATCCGTAATCATCCCGGGCATTTGCCCGGGAATTATTCTAGGATTATTTTCtt                                                                                                                <  2:539057/143‑1 (MQ=255)
                                catggcaCAGTTGTGGCCCTATTTTCTTGATGTAAACAGATAAAGGTTTATCAGTCCATATGAATATGCAAAGATTAATAATCCATTAAAACAGTAATCATCTCGGGCAAATGTCCGGGAATTATTCTAGGATTATTTTCttt                                                                                                               <  2:544430/137‑1 (MQ=255)
                                  tGCTACAGTGGTGGGCCGATTTTCTGGATGTAAACAGAGAAAGGTTTATCAGTCCATTTGAATATGCAAAGATTAATAATCCATTAAAACAGTAATCATCCCGGGCAAATGCCCGGGAATTATTCTAGGATTATTTTCTTTGt                                                                                                             >  2:50549/1‑143 (MQ=255)
                                   gCTACAGTGGTGGGCCGATTTTCTGGATGTAAACAGAGAAAGGTTTATCAGTCCATTTGAATACGCAAAGATTAATAATCCATTAAAACAGTAATCATCCCGGGCAAATGCCCGGGAATTATTCTAGGATTATTTTCTTTGtt                                                                                                            <  1:254804/143‑1 (MQ=255)
                                    cTACAGTGGTGGGCGGAGTTGCTGGATGTAAACAGAGAAAGGGTGATCAGTCGATGTGAATATGCAAAGATTAATAATCCATTAAAACAGTAATCATCCCGGGCAAATGCCCGGGAATTATTCTAGGATTATTTTCTTTGTTa                                                                                                           <  1:308340/143‑1 (MQ=255)
                                    cTACAGTGGTGGGCCGATTTTCTGGATGTAAACAGAGAAAGGTTTATCAGTCCATTTGAATATGCAAAGATTAATAATCCATTAAAACAGTAATCATCCCGGGCAAATGCCCGGGAATTATTCTAGGATTATTTTCTTTGTTa                                                                                                           >  1:693802/1‑143 (MQ=255)
                                     tACAGTGGTGGGCCGATTTTCTGGATGTAAACAGAGAAAGGATTCCGAGCACAGTTGAATATGCACAGATTAATAATCCATTAAAACAGTAATCATCACGGACAACTGACAGGGAATTATACTAGGATGACTTTCTTTgctta                                                                                                          >  2:237966/1‑139 (MQ=255)
                                      aCAGTGGTGGGCCGATTTTCTGGATGTGAACAGAGAAAGGTTTATCAGTCCATTTGAATATGCAAAGATTAATAATCCATTAAAACAGTAATCATCCCGGGCAAATGCCCGGGAATTATTCTAGGATTATTTTCTTTGTTaaa                                                                                                         <  2:1023271/143‑1 (MQ=255)
                                      aCAGTGGTGGGCCGATTTTCTGGATGTAAACAGAGAAAGGTTTATCAGTCCATTTGAATATGCAGAGATTAATAATCCATTAAAACAGTAATCATCCCGGGCAAATGCCAGGGAATTATTCTAGGATTATTTTCTGTGTTaaa                                                                                                         >  1:918394/1‑143 (MQ=255)
                                        aGTGGTGGGCCGATTTTCTGGATGTAAACAGAGAAAGGTTTATCAGTCCATTTGAATATGCAAAGATTAATAATCCATTAAAACAGTAATCATCCCGGGCAAATGCCCGGGAATTATTCTAGGATTATTTTCTTTGTTgaaaa                                                                                                       >  1:30860/1‑143 (MQ=255)
                                         gtggtgGGCCGATTTTCTGGATGTAAACAGAGAAAGGTTTATCAGTCCATTTGAATATGCAAAGATTAATAATCCATTAAAACAGTAATCATCCCGGGCAAATGCCCGGGAATTATTCTAGGATTATTTTCTTTGTTaaaaaa                                                                                                      >  1:1079208/1‑143 (MQ=255)
                                          tggtggGCCGATTTTCTGGATGTAAACAGAGAAAGGTTTATCAGTCCATTTGAATATGCAAAGATTAATAATCCATTAAAACAGTAATCATCCCGGGCAAATGCCCGGGAATTATTCTAGGATTATTTTCTTTGTTAAAAAAg                                                                                                     >  2:188723/1‑143 (MQ=255)
                                               ggCCGATTTTCTGGATGTAAACAGAGAAAGGTTTATCAGTCCATTTGAATATGCAAAGATTAATAATCCATTAAAACAGTAATCATCCCGGGCAAATGCCCGGGAATTATTCTAGGATTATTTTCTTTGTTAAAAAAGACaaa                                                                                                >  1:369404/1‑143 (MQ=255)
                                                cccGAATTTCTGGAAGTAAACAGAGAAAGGTTTATCAGTCCATTTGAATATGCAAAGATTAATAATCCATTAAAACAGTAATCATCCCGGGCAAATGCCCGGGAATTATTCTAGGATTATTTTCTTTGTTAAAAAAGACAAAc                                                                                               <  1:854147/142‑1 (MQ=255)
                                                 ccGATTTTCTGGATGTAAACAGAGAAAGGTTTATCAGTCCATTTGAATATGCAAAGATTAATAATCCATTAAAACAGTAATCATCCCGGGCAAATGCCCGGGAATTATTCTAGGATTATTTTCTTTGTTAAAAAAGACAAACg                                                                                              <  1:86441/143‑1 (MQ=255)
                                                  cGATTTTCTGGATGTAAACAGAGAAAGGTTTATCAGTCCATTTGAATATGCAAAGATTAATAATCCATTAAAACAGTAATCATCCCGGGCAAATGCCCGGGAATTATTCTAGGATTATTTTCTTTGTTAAAAAAGACAAACgg                                                                                             <  2:203152/143‑1 (MQ=255)
                                                      tttCTGGATGTAAACAGAGAAAGGTTTATCAGTCCATGTGAATATGCAAAGATTAATAATCCATTAAAACAGTAATCATCCCGGGCAAATGCCCGGGAATTATTCTAGGATTATTTTCTTTGTTAAAAAAGACAAACGGTAtt                                                                                         <  2:916851/143‑1 (MQ=255)
                                                        tCTGGATGTAAACAGAGCAAAGTTTGTCGGTCCATCTTAATAGCCAAAGATTAATAATCCATTAAAACAGTAATCATCCCGGGCAAATGCCCGGGAATTATTCTAGGATTATTTTCTTTGTTAAAAAAGACAAACGGTATTaa                                                                                       <  1:150411/143‑1 (MQ=255)
                                                             aTGTAAACAGATAAAGGTTTATCAGTCCATTTGAATATGCAAAGATTAATAATCCATTAAAACAGTAATCATCCCGGGCAAATGCCCGGGAATTATTCTAGGATTATTTTCTTTGTTAAAAAAGACAAACGGTATTAACTGAt                                                                                  <  2:881920/143‑1 (MQ=255)
                                                               gTAAACAGAGAAAGGTTTATCAGTCCATTTGAATATGCAAAGATTAATAATCCATTAAAACAGTAATCATCCCGGGCAAATGCCCGGGAATTAATCTAGGATTATTTTCTTTGTAAAAAAAGACAAACGGTATTAACTGATGt                                                                                >  2:217294/1‑143 (MQ=255)
                                                                  aaCAGAGAAAGGTTTATCAGTCCATTTGAATATGCAAAGATTAATAATCCATTAAAACAGTAATCATCCCGGGCAAATGCCCGGGAATTATTCTATGATTATTTTCTTTGTTAAAAAAGACAAACGGTATTAACTGATGtatt                                                                             <  1:1057236/143‑1 (MQ=255)
                                                                      gagaAAGGGTGATCAGTCCATTTGAATATGCAAAGATTAGTAATCCATTAAAACAGTAATCATCCCGGGCAAATGCCCGGGAATTATTCTAGGATTATTTTCTTTGTTAAAAAAGACAAACGGTATTAACTGATGtatttact                                                                         <  1:38365/143‑1 (MQ=255)
                                                                       agaAAGGTTTATCAGTCCATTTGAATATGCAAAGATTAATAATCCATTAAAACAGTAATCATCCCGGGCAAATGCCCGGGAATTATTCTAGGATTATTTTCTTTGTTAAAAACGACAAACGGTATTAACGGATGtatttacta                                                                        >  1:1011395/1‑143 (MQ=255)
                                                                        gaAAGGTTTATCAGTCCATTTGAATATGCAAAGATTAATAATCCATTAAAACAGTAATCATCCCGGGCAAATGCCCGGGAATTATTCTAGGATTATTTTCTTTGTTAAAAAAGACAAACGGTATTAACTGATGtatttactat                                                                       >  1:219769/1‑143 (MQ=255)
                                                                         aaaGGTTTATCAGTCCATTTGAATATGCAAAGATTAATAATCCATTAAAACAGTAATCATCCCGGGCAAATGCCCGGGAATTATTCTAGGATTATTTTCTTTGTTAAAAAAGACAAACGGTATTAACTGATGtatttactatt                                                                      >  1:196945/1‑143 (MQ=255)
                                                                            ggTTTATCAGTCCATTTGAATATGCAAAGATTAATAATCCATTAAAACAGTAATCATCCCGGGCAAATGCCCGGGAATTATTCTAGGATTATTTTCTTTGTTAAAAAAGACAAACGGTATTAACTGATGtatttactatttac                                                                   >  1:1050705/1‑143 (MQ=255)
                                                                            ggTTTATCAGTCCATTTGAATATGCAAAGATTAATAATCCATTAAAACAGTAATCATCCCGGGCAAATGCCCGGGAATTATTCTAGGATTATTTTCTTTGTTAAAAAAGACAAACGGTATTAACTGATGtatttactatttac                                                                   >  2:900810/1‑143 (MQ=255)
                                                                              tttATGAGTCCATTTGAAGATGCAAAGATTAATAATCCATTAAAACAGTAATCATCCCGGGCAAATGCCCGGGAATTATTCTAGGATTATTTTCTTTGTTAAAAAAGACAAACGGTATTAACTGATGTATTTACTATTTACCg                                                                 <  1:216356/143‑1 (MQ=255)
                                                                                  tCAGTCCATTTGAATTTGCAAAGATTAATAATCCATTAAAACAGTAATCATCCCGGGCAAATGCCCGGGAATTATTCTAGGATTATTTTCTTTGTTAAAAAAGACAAACGGTATTAACTGATGTATTTACTATTTACCGCTcc                                                             <  1:1044503/143‑1 (MQ=255)
                                                                                      tCCATTTGAATATGCAAAGATTAATAATCCATTAAAACAGTAATCATCCCGGGCAAATGCCCGGGAATTATTCTAGGATTATTTTCTTTGTTAAAAAAGACAAACGGTATTAACTGATGTATTTACTATTTACAGATCCCTGc                                                         >  2:743152/1‑143 (MQ=255)
                                                                                        cagttGAATATGCAAAGATTAATAATCCATTAAAACAGTAATCATCCCGGGCAAATGCCCGGGAATTATTCTAGGATTATTTTCTTTGTTAAAAAAGACAAACGGTATTAACTGATGTATTTACTATTTACCGCTCCCTGCAg                                                       <  1:927113/140‑1 (MQ=255)
                                                                                        cagtggAAGATGCAAAGATTAATAATCCATTAAAACAGTAATCATCGCGGGCAAATGCCCGGGAATTATTCTAGGATTATTCTCTTTGTTAAAAAAGACAAACGGTATTAACTGATGTATTTACTATTTACCGCTCCCTGCAg                                                       <  1:829454/138‑1 (MQ=255)
                                                                                        cATTTGAATATGCAAAGATTAATAATCCATTAAAACAGTAATCATCCCGGGCAAATGCCCGGGAATTATTCTAGGATTATTTTCTTTGTTAAAAAAGACAAACGGTATTAACTGATGTATTTACTATTTACCGCTACCTGCAg                                                       >  1:1105554/1‑143 (MQ=255)
                                                                                           ttGAATATGCAAAGATTAATAATCCATTAAAACAGTAATCATCCCGGGCAAATGCCCGGGAATTATTCTAGGATTATTTTCTTTGTTAAAAAAGACAAACGGTATTAACTGATGTATTTACTATTTACCGCTCCCTGCAgggg                                                    <  2:1060138/143‑1 (MQ=255)
                                                                                            ttattttGCAAAGATTAATAATCCATTAAAACAGTAATCATCCCGGGCAAATGCCCGGGAATTATTCTAGGATTATTTTCTTTGTTAAAAAAGACAAACGGTATTAACTGATGTATTTACTATTTACCGCTCCCTGCAggggg                                                   <  2:947366/137‑1 (MQ=255)
                                                                                            tGAATATGCAAAGATTAATAATCCATTAAAACAGTAATCATCCCGGGCAAATGCCCGGGAATTATTCTAGGATTATTTTCTTTGTTAAAAAAGACAAACGGTATTAACTGATGTATTTACTATTTACCGCTCCCTGCAggggg                                                   <  1:615862/143‑1 (MQ=255)
                                                                                             gAATATGCAAAGATTAATAATCCATTAAAACAGTAATCATCCCGGGCAAATGCCCGGGAATTATTCTAGGATTATTTTCTTTGTTAAAAAAGACAAACGGTATTAACTGATGTATTTACTATTTACCGCTCCCTGCAgggggg                                                  <  2:297333/143‑1 (MQ=255)
                                                                                               atatGCAAAGATTAATAATCCATTAAAACAGTAATCATCCCGGGCAAATGCCCGGGAATTATTCTAGGATTATTTTCTTTGTTAAAAAAGACAAACGGTATTAACTGATGTATTTAGTATTTACCGCTCCCTGCATGGGGGAt                                                >  1:243002/1‑143 (MQ=255)
                                                                                                   gCAAAGATTAATAATCCATTAAAACAGTAATCATCCCGGGCAAATGCCCTGGAATTATTCTAGGATTATTTTCTTTGTTAAAAAAGACAAACGGTATTAACTGATGTATTTACTATTTACCGCTCCCTGCAGGGGGGATTATc                                            <  2:959935/143‑1 (MQ=255)
                                                                                                   gCAAAGATTAATAATCAATTAAAACAGTAATCATCCCGGGCAAATGCCCGGGAATTATTCTAGGATTATTTTCTTTGTTAAAAAAGACAAACGGTATTAACTGATGTATTTACTATTTACCGCTCCCTGCAGCGGGGATTATc                                            >  2:1042454/1‑143 (MQ=255)
                                                                                                    cAAAGATTAATAATCCATTAAAACAGTAATCATCCCGGGCAAATGCCCGGGAATTATTCTAGGATTATTTTCTTTGTTAAAAAAGACAAACGGTATTAACTGATGTATTTACTATTTACCGCTCCCTGCAGGGGGGATTATCa                                           <  1:642731/143‑1 (MQ=255)
                                                                                                    cAAAGATTAATAATCCATTAAAACAGTAATCATCCCGGGCAAATGCCCGGGAATTATTCTAGGATTATTTTCTTTGTTAAAAAAGACAAACGGTATTAACTGAGGTATTTACTATTTACCGCTCCCTGCAGGGGGGATTATCa                                           >  1:1029764/1‑143 (MQ=255)
                                                                                                     aaaGATTAATAATCCATTAAAACAGTAATCATCCCGAGCAAATGCCCGGGAATTATCCTAGGATTATCTTCTTTGTTAAAAAAGACAAACGGTATTAACTGATGTATTTACTATTTACCGCTCCCTGAAGGGGGGGTTATctg                                          >  2:833206/1‑141 (MQ=255)
                                                                                                      aaGATTAATAATCCAATAAAACAGTAAGCATCCCGGGCAAATGCCCGGGAATTACTCTAGGATTATTTTCTTTGTTAAAAAAGACAAACGGTATTAACTGATGTATTTACTATTTACCGCTCCCTGCAGGGGGGATTATCAGa                                         <  1:864214/143‑1 (MQ=255)
                                                                                                          ttAATAATCCATTAAAACAGTAATCATCCCGGGCAAATGCCCGGGAATTATTCTAGGATTATTTTCTTTGTTAAAAAAGACAAACGGTATTAACTGATGTATTTACTATTTACCGCTCCCTGCAGGGGGGATTATCAGAATcc                                     >  2:450140/1‑143 (MQ=255)
                                                                                                            agtagtCCAGTAAGACAGTAATCATCCCGGGGAAATGCCCGGGAATTATTCTAGGATTATTTTCTTTGTTAAAAAAGACAAACGGTATTAACTGATGTATTTACTATTTACCGCTCCCTGCAGGGGGGATTATCAGAATCcgc                                   <  1:775757/138‑1 (MQ=255)
                                                                                                             ataatCCATTAAAACAGTAATCATCCCGGGCAAATGCCCGGGAATTATTCTAGGATTATTTTCTTTGTTAAAAAAGACAAACGGTATTAACTGATGTATTTACTATTTACCGCTCCCTGCAGGGGGGATTATCAGAATCcgcg                                  >  1:737367/1‑143 (MQ=255)
                                                                                                                    aTTAAAACAGTAATCATCCCGGGCAAATGCCCGGGAATTATTCTAGGATTATTTTCTTTGTTAAAACAGACAAACGTTATTAACCGATGTATTTACTATTTACCGCTACCTGCAGGGGGGATTATCAGACTCCGCGGTTGTTc                           >  2:274267/1‑143 (MQ=255)
                                                                                                                    aTTAAAACAGTAATCATCCCGGGCAAATGCCCGGGAATTATTCTAGGATTATTTTCTTTGTTAAAAAAGACAAACGGTATTAACTGATGTATTTACTATTTACAGCTCCCTGAAGGGGGGATTATCAGAATCAGCGGTTAtta                           >  2:138645/1‑142 (MQ=255)
                                                                                                                    aTTAAAACAGTAATCATCCCGGGCAAATGCCCGGGAATTACTCTAGGATTATTTTCTTTGTTAAAAAAGACAAACGGTATTAACTGATGTATTTACTATTTACCGCTCCCTGCAGGGGGGGTTATCAGAATCAGCGTTTATTc                           >  1:1077024/1‑143 (MQ=255)
                                                                                                                      tAAAACAGTAATCTTCCCCGTCACATTCCCGGGAATTATTCTAGGATTATTTTCTTTGTTAAAAAAGACAAACGGTATTAACTGATGTATTTACTATTTACCGCTCCCTGCAGGGGGGATTATCAGAATCCGCGGTTATTCat                         <  1:1037178/143‑1 (MQ=255)
                                                                                                                       aaaaCAGTAATCATCCCGGGCAAATGCCCGGGAATTATTCTAGGATTATTTTCTTTGTTAAAAAAGACAAACGGTATTAACTGATGTATTTACTATTTACCGCTCCCTGCAGGGGGGATTATCAGAATCCGCGGTTATTCatt                        >  1:314406/1‑143 (MQ=255)
                                                                                                                        aaaCAGTAATCATCCCGGGCAAATGCCCGGGAATTATTCTAGGATTATTTTCTTTGTTAAAAAAGACAAACGGTATTAACTGATGTATTTACTATTTACCGCTCCCTGCAGGGGGGATTATCAGAATCCGCGGTTATTCatta                       >  2:888073/1‑143 (MQ=255)
                                                                                                                            aGTAATCATCCCGGGCAAATGCCCGGGAATTATTCTAGGATTATTTTCTTTGTTAAAAAAGACAAACGGTATTAACTGATGTATTTACTATTTACCGCTCCCTGCAGGGGGGATTATCAGAATCCGCGGTTATTCAttattta                   >  1:900604/1‑143 (MQ=255)
                                                                                                                            aGTAATCATCCCGGGCAAATGCCCGGGAATTATTCTAGGATTATTTTCTTTGTTAAAAAAGACAAACGGTATTAACTGATGTATTTACTATTTACCGCTCCCTGCAGGGGGGATTATCAGAATCCGCGGTTATTCAttattta                   <  2:302124/143‑1 (MQ=255)
                                                                                                                            aGTAATCATCCCGGGCAAATGCCCGGGAATTATTCTAGGATTATTTTCTTTGTTAAAAAAGACAAACGGTATTAACTGATGTATTTACTATTTACCGCTCCCTGCAGGGGGGATTATCAGAATCCGCGGTTATTCAttattta                   <  1:50549/143‑1 (MQ=255)
                                                                                                                              taataaTCCCGGGCAAATGCCAGGGAATGATTTTAGGATTATTTTCTTTGTTACAAAAGACAAACGGTATTAACTGATGTATTTACTATTTAGCGCTTCCTGCAGGGGGGATTATCAGAATCTGCGGTTATTCATTATTtata                 <  2:53966/143‑1 (MQ=255)
                                                                                                                              tAATCATCCCGGGCAAATGCCCGGGAATTATTCTAGGATTATTTTCTTTGTTAAAAAAGACAAACGGTATTAACTGATGTATTTACTATTTACCGCTCCCTGCAGGGGGGATTATCAGAATCCTCGGTTATTCCTTATTgata                 >  2:1104376/1‑143 (MQ=255)
                                                                                                                                 tcatcCCGGGCAAATGCCCGGGAATTATTCTAGGATTATTTTCTTTGTTAAAAAAGACAAACGGTATTAACTGATGTATTTACTATTTACCGCTCCCTGCAGGGGGGATTATCAGAATCCGCGGTTATTCATTATTTATATAc              >  2:140976/1‑143 (MQ=255)
                                                                                                                                   ttcCCGGGCATTTGCCCGGGAATTATTCTAGGATTATTTTCTTTGTTAAAAAAGACAAACGGTATTAACTGAGGTATTTACTATTTACCGCTCCCTGCAGGGGGGATTATCAGAATCCGCGGTTATTCATTATTTATATACAt            >  1:228549/2‑143 (MQ=255)
                                                                                                                                   ttcCCGGGCATTTGCCCGGGAATTATTCTAGGATGATTTTCTTTGTTAAAAAAGACAAACGGTATTAACTGATGTATTTACTATTTACCGCTCCCTGCAGGGGGGATTATCAGAATCCGCGGTTATTCATTATTTATATACAt            >  1:700734/2‑143 (MQ=255)
                                                                                                                                    tcCCGGGCAAATGCCCGGGAATTATGCTAGGATTATTTTCTTTGTTAAAAAAGACAAACGGTATTTACTGATGTATTTACTATTTACCGCTCCCTGCAGGGGGGATTATAAGAGTGGGCGGTGACTAACTATTTATATAAAtt           >  1:723778/1‑143 (MQ=255)
                                                                                                                                       cGGGCAAATGCCCGGGAATTATTCTAGGATTATTTTCTTTGTTAAAAAAGACAAACGGTATTAACTGATGTATTTACTATTTACCGCTCCCTGCAGGGGGGATTATCAGAATCCGCGGTTATTCATTATTTATATACATTCaa        <  1:188723/143‑1 (MQ=255)
                                                                                                                                             aaTGCCCGGGAATTATTCTAGGATTATTTTCTTTGTTAAAAAAGACAAACGGTATTAACTGATGTATTTACTATTTAACGCTCCCTGCAGGGGAGATTAACAGAATCCGCGGTTATTCATTATTTATATACATTCAATaaaaa  <  2:445959/143‑1 (MQ=255)
                                                                                                                                             |                                                                                                                                              
CATAAAGCAGAGCATCTGGAAGAACGGCGATTGATGCTACAGTGGTGGGCCGATTTTCTGGATGTAAACAGAGAAAGGTTTATCAGTCCATTTGAATATGCAAAGATTAATAATCCATTAAAACAGTAATCATCCCGGGCAAATGCCCGGGAATTATTCTAGGATTATTTTCTTTGTTAAAAAAGACAAACGGTATTAACTGATGTATTTACTATTTACCGCTCCCTGCAGGGGGGATTATCAGAATCCGCGGTTATTCATTATTTATATACATTCAATAAAAA  >  NC_000913/4497812‑4498095

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: