| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_000913 | 681,694 | A→G | 9.0% | intergenic (+31/+29) | djlC → / ← hscC | co‑chaperone DjlC/chaperone protein HscC |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 681,694 | 0 | A | G | 9.0% | 127.3 / 3.5 | 57 | intergenic (+31/+29) | djlC/hscC | co‑chaperone DjlC/chaperone protein HscC |
| Reads supporting (aligned to +/- strand): ref base A (27/23); new base G (4/2); total (32/25) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 6.82e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 4.85e-01 | |||||||||||
AAAATGATGAGGGTGAAAAACCACAGAGCATTACCAGCATTATCAAAATCAGTTTAACGGTGCTGGTGATAGGTTATGCTCTCGGCAAAATCGCGATGTTGTTTAGCTGACGATGTGTTTTTTGCGCCGATGCCGGATGCAGCGTTTACGCCGCATCCGGCAGCCGTGTTTATGGGATCTCAATGGCTAAATAATCGCTCGCCCGCCGCCGAACTTCATCCACGCGGGCCATATCGTTTGACTGCAACGCCGCATCAAAATCGGTGATCACCCGGCC > NC_000913/681554‑681830 | aaaaTGATGAGGGTGAAAAACCACAGAGCATTACCAGCATTATCAAAATCAGTTTAACGGTGCTGGTGATAGGTTATGCTCTCGGCAAAATCGCGATGTTGTTTAGCTGACGATGTGTTTTTTGCGCCGATGCCGGATGCAGc < 1:430766/143‑1 (MQ=255) aaaTGATGAGGGTGAAAAACCACAGAGCATTACCAGCATTATCAAAATCAGTTTAACGGTGCTGGTGATAGGTTATGCTCTCGGCAAAATCGCGATGTTGTTTAGCTGACGATGTGTTTTTTGCGCCGATGCCGGATgcggcg > 1:123353/1‑143 (MQ=255) gaGGGTGAAAAACCACAGAGCATTACCAGCATTATCAAAATCAGTTTAACGGTGCTGGTGATAGGTTAGGCTCTCGGCAAAATCGCGATGTTGTTTAGCTGACGAGGTGGTTCTTGCGACGATGCCGGATGCCGCGGTTAcgg > 1:1013938/1‑142 (MQ=255) gaGCGTGAAAAACCACAGAGCATTACCAGCATTATCAAAATCAGTTTAACGGTGCTGGTGATAGGTTATGCTCTCGGCAAAATCGCGATGTTGTTTAGCTGACGATGTGTTTTTTGCGCCGATGCCGGATGCAGCGTTTAcgc < 1:706069/143‑1 (MQ=255) ggggTGAAAAGCCACAGGGCATTACCAGCATTATCAACATCAGTTTAACGTTGCTGGTGATAGTTTATGCTCTCGGCAAAATCGCGATGTTGTTTAGCTGACGATGTGTTTTTTGCGCCGATGCCGGATGCAGCGTTTAcgcc < 2:1034850/142‑1 (MQ=255) aagaCCACAGAGCATTACCAGCATTATCAAAATCAGTTTAACGGTGCTGGTGATAGGTTATGCTCTCGGCAAAATCGCGATGTTGTTTAGCTGACGATGTGTTTTTTGCGCCGATGCCGGATGCGGCGTAAACGCTGCATCCg < 1:339523/140‑1 (MQ=255) aaaCCACAGAGCATTACCAGCATTATCAAAATCAGTTTAACGGTGCTGGTGATAGGTTATGCTCTCGGCAAAATCGCGATGTTGTTTAGCTGACGATGTGTTTTTTGCGCCGATGCCGGATGCAGCGTTTACGCCGCATCCgg > 2:13021/1‑143 (MQ=255) tccgcaGAGCTTTCCTAGCATCACCCAAGTCAGTTTAACGGTGCTGGTGATAGGTTATGCTCTCGGCAACAGCGCGATTTTGTTTAGCTGACGATGTGTTTTTTGCGCCGATGCCGGATGCAGCGTTTACGCCGCATCCGGCa < 2:38695/139‑1 (MQ=255) agagCATTACCGGCATTATCAAAATCAGTTTAACGGTGCTGGTGATAGGTTATGCTGTCGACAAAATCGCGATGTTGTTTAGCTGACGATGTGTTTTTTGCGCCGATGCCGGCTGCAGTGTTTACGCCGCATCCGGGAGCCgt > 2:614195/1‑143 (MQ=255) tgaCCCGCATTATCAAAATCAGTTTAACGGTGCTGGTGATAGGTGATGCTCTCGGCAAAATCGCGATGTTGGTTAGCGGACTAGGTGTTGTTTGCTCCGATTCCGGAGGCAGCGTTTACGCCGCATCCGGCAGCCGTGTTTAt < 1:840530/141‑1 (MQ=255) ccAGCATTATCAAAATCAGTTTAACGGTGCTGGTGATAGGTTATGCTCTCGGCAAAATCGCGATGTTGTTTAGCTGACGATGTGTTTTTTGCGCCGATGCCGGATGCAGCGTTTACGCCGCATCCGGCAGCCGTGTTTATggg > 1:840922/1‑143 (MQ=255) ccAGCATTATCAAAATCAGTTTAACGGTGCTGGTGATAGGTTATGCTCTCGGCAAAATCGCGATGTTGTTTAGCTGACGATGTGTTTTTTGCGCCGATGCCGGATGCAGCGTTTACGCCGCATCCGGCAGCCGAGTTTATggg > 2:306731/1‑143 (MQ=255) cAGCATTATCAAAATCAGTTTAACGGTGCTGGTGATAGGTTATGCTCTCGGCAAAATCGCGATGTTGTTTAGCTGACGATGTGTTTTTTGCGCCGATGCCGGATGCAGCGTTTACGCCGCAACCGCAATCCGTGTTTATGGGa > 1:146882/1‑143 (MQ=255) cATTATCAAAATCAGTTTAACGGTGCTGGTGATAGGTTATGCTCTCGGCAAAATCGCGATGTTGTTTAGCTGACGATGTGTTTTTTGCGCCGATGCCGGATGCAGCGTTTACGCCGCATCCGGCAGCCGCGTTTATGGGAtct > 2:98061/1‑143 (MQ=255) tATCAAAATCAGTTTAACGGTGCTGGTGATAGGTTATGCTCTCGGCAAAATCGCGATGTTGTTTAGCTGACGATGAGTACTATGCGTCGATGCCGGATGCAGCGTTTACGCCGCATCCGGCAGCCGTGTTTATGGGATCTCaa < 1:303792/143‑1 (MQ=255) aaaTCAGTTTAACGGTGCTGGTGATAGGTTATGCTCTCGGCAAAATCGCGATGTTGTTTAGCTGCCGATGTGTTTTTTGCGCCGATCCCGGATGCGGCGTTTACGCCGCATCCGGCAGCCGTGTTTATGGGATCTCACTGGCt > 1:578097/1‑143 (MQ=255) tttAACGGTGCTGGTGATAGGTTATGCTCTCGGCAAAATCGCGATGTTGTTTAGCTGACGATGTGTTTTTTGCGCGGATGCCGGATGCAGCGTTTACGCCGCATCCGGCAGCCGTGTTTATGGGATCTCAATGGCTAaataat < 1:991545/143‑1 (MQ=255) tttAACGGTGCTGGTGATAGGTTATGCTCTCGGCAAAATCGCGATGTTGTTTAGCTGACGATGTGTTTTTTGCGCCGATGCCGGATGCAGCGTTTACGCGGCATCCGGCAGCCGTGTTTATGGGATCTCAATGGCTAaataat > 2:766681/1‑143 (MQ=255) tttAACGGTGCTGGTGATAGGTTATGCTCTCGGCAAAATCGCGATGTCGTTTAGCTGACGATGTGTTTTTTGCGCCGATGCCGGATGCAGCGTTTACGCCGCATCCGGCAGCCGCGTTTATGGGACCTCAATGGCTCaataat > 2:456544/1‑143 (MQ=255) ttAACGCTGCTGGTGATAGGTTATGCTCTCGGCAAAATCGCGATGGTGTTTAGCTGACGATGTGTTTTTTGCGCCGATGCCGGATGCAGCGTTTACGCCGCATCCGGCAGCCGTGTTTATGGGATCTCAATGGCTAAATAAtc < 1:50034/143‑1 (MQ=255) aaCGGTGCTGGTGATAGGTTATGCTCTCGGCAAAATCGCGATGTTGTTTAGCTGACGATGTGTTTTTTGCGCCGATGCCGGATGCAGCGTTTATGCCGCATCCGCCAGCCGGGGTCATGGGATCTCTATTGCTAAATAAtcgc > 2:290916/1‑143 (MQ=255) aCGGTGCTGGTGATAGGTTATGCTCTCGGCAAAATCGCGATGTTGTTTAGCTGACGATGTGTTTTTTTTTTTGTTTCCGGATGCAGCGTTTACGCCGCATCCGGCAGCCGTGTTTAGGGGATCTCAATGCCTAAATAAtcgct > 2:929811/1‑143 (MQ=255) ggTGCTGTTGATAGGTTATGCGCTCGGCAAAAGCGCGATGTTGTTTAGCTGACGATGTGTTTTTTGCGCCGATGCCGGATGCAGCGTTTACGCCGCATCCGGCAGCCGTGTTTATGGGATCTCAATGGCTAAATAAtcgctcg < 2:299798/143‑1 (MQ=255) gggtgTGATGGGTTATGCGTTCGGCAAAATCGCGAGGTGGACGAGCTGACTATGTGTTTTGTGCGCCGATGGCGGATGCAGCGTTTGCGCCGCATCCGGCAGCCGTGTTTATGGGATCTCAATGGCTAAATAATCGCTcgccc < 2:779630/139‑1 (MQ=255) gCTGGTGATAGGTTATGCTCTCTGCAAAATCGCGATGTTGTTTATCTGACTATGTTTTTTTTGCGCCGATGCCGGATGCAGCGTTTACGCCGCAGCCGGCAGCCGTGTTTATGGGATCTCAATGGCTAAATAATCGCTcgccc < 1:185413/143‑1 (MQ=255) cTGGTGATAGGTTATGCTCTCGGCAAAATCGCGATGTTGTTTAGCTGACGATGTGTTTTTTGCGCCGATGCCGGATGCAGCGTTTACGCCGCATCCGGCAGCCGTGTTTCTGGCACCTCACCGGCTTATTACTAGctcgctcg > 1:744190/1‑143 (MQ=255) cTGGTGATAGGTTATGCTCTCGGCAAAATCGCGATGTTGTTTAGCTGACGACGTGATAATCGCGCTGATGCCCGTAGCAGCGGTTACGCCGCATCCGGCAGCCGTGTTTATGGCATCTCAACGGCTAAACAATCgcccgcccc > 2:492912/1‑142 (MQ=255) tGGTGATAGGTTATGCTCTCGGCACAATCGCGATGTGGTTTAGCTGACGATGTGGTGTCTGCGCCGATGCCGGATGCAGCGTTCACGCCGCCTCCGGCAGCCGTGTTTCTGGGATCTCACTGGCGAAATCATCGCTcgcccgc > 1:137488/1‑143 (MQ=255) tGGTGATAGGTTATGCTCTCGGCAAAATCGCGATGTTGTTTAGCTGACGATGTGTTTTTTGCGCCGATGCCGGATGCAGCGTTTACGCCGCATCCGGCAGCCGTGTTTATGGGATCTCAATGGCTAAATAATCGCTcgcccgc > 1:964807/1‑143 (MQ=255) tGGTGATAGGTTATGCTCTCGGCAAAATCGCGATGTTGTTTAGCTGACGATGTGTTTGTTTAGACGATGCTGGATGCAGCTGTGACGCCGCATCCGGCAGGCGTGTGTCTGGGATCTCAATGGCGAAATAAGCGTCcgcccgg > 2:142267/1‑142 (MQ=255) tGATAGGTTATGCGCTCGGCAAAATCGGGATGTTGTTTAGCTGACGATGTGTTTTTTGCGCCGATGCCGGATGCAGCGTTTACGCCGCATCCGGCAGCCGTGTTTATGGGATCTCAATGGCTAAATAATCGCTCGCccgccgc < 1:231061/143‑1 (MQ=255) gATAGGTTATGCTCTCGGCAAAATCGCGATGTTGTTTAGCTGACGATGTGTTTTTTGCGCCGATGCCGGATGCAGCGTTTACGCCGCATCCGGCAGCCGTGTTTATGGGATCTCAATGTCTAAATAATCGCTCGCccgccgcc > 1:855863/1‑143 (MQ=255) aTAGGTTATGCTCTCGGCAAAATCGCGATGTTGTTTAGCTGACGATGTGTTTTTTGCGCCGATGCCAGATGCAGCGTTTACGCCGCATCCGGCAGCCGTGTTTATGGGATCTCAATGGCTAAATAATCGCTCGCccgccgccg > 1:630951/1‑143 (MQ=255) ggTTATGCTCTCGGCTAAATCGCGATGTTGTTTAGCTGACGATGTGTTTTTTGCGCCGATGCCGGGTGCAGCGTTTACGCCGCATCCGGCAGCCGTGTTTATGGGATCTCAATGGCTAAATAATCGCTCGCCCGCCGCCGAAc < 2:958802/143‑1 (MQ=255) ttATGCTCTCGGCAAAATCGCGATGTTGTTTAGCTGACGATGTGTTGTTTGCGCCGATGCCGGATGCAGCGGGTTCGCCGCATCCGGCAGCCGTGTTTATGGGGCCGCAACTGCGAACTAGTCGCTCGCCCGCCGCCGAACtt > 2:282726/1‑143 (MQ=255) aTGCTCTCGGCAAAATCGCGATGTTGTTTAGCTGACGATGTGATTTTTGCGCCGATGCCGGATGCAGCGTTTACGCCGCATCCGGCAGCCGTGTTTATGGGATCTCAATCGCTAAGTAATCGCTCGCCCGCCGCCGAACttaa > 2:901845/1‑141 (MQ=255) gCTCTCGGCAAAATCGCGATGTTGTTTAGCTGACGATGTGTTTTTTGCGCCGATGCCGGATGCAGCGTTTACGCCGCATCCGGCAGCCGTGTTTATGGGATCTCAATGGCTAAATAATCGCTCGACCGCCGCCGAACTTCAtg > 2:352599/1‑142 (MQ=255) cAAAATCGCGATGTTGTTTAGCTGACGATGTGTTTTTTGCGCCGATGCCGGATGCAGCGTTTACGCCGCATCCGGCAGCCGTGTTTATGGGATCTCAATGGCTAAATAATCGCTCGCCCGCCGCCGAACTTCATCACCGCggg > 1:365365/1‑143 (MQ=255) aaaTCGCGATGTTGTTTAGCTGACGATGTGTTTTTTGCGCCGATGCCGGATGCAGCGTTTACGCCGCATCCGGCAGCCGTGTTTATGGGAACAAACACACTTTTGTAGCGCTAGCCCGCCGCCGAACTTCATCCACGCGGGcc > 1:1093208/1‑143 (MQ=255) gcgATGTTGTTTAGCTGACGATGTGTTTTTTGCGCCGATGCCGGATGCAGCGTTTACGCCGCATCCGGCAGCCGTGTTTATGGGATCTCAATGGCTAAATAATCGCTCGCCCGCCGCAGAACTTCATTCACGAGGGCCAGATc > 2:912847/1‑143 (MQ=255) gATGTTGTTTAGCTGACGATGTGTTTTTTGCGCCGATGCCGGATGCAGCGTTTACGCCGCATCCGGCAGCCCTGTTTATGGGATCTCACTGGCTAAATAATCGCTCGCCCGCCGCCGACCTTCCTCCACCCGGGccccctccg > 2:196874/1‑136 (MQ=255) aTGTTGTTTAGCTGACGATGTGTTTTTTGCGCCGATGCCGGATGCAGCGTTTACGCCGCATCCGGCAGCCGTGTTTATGGGATCTCAATGGCTAAATAATCGCTCGCCCGCCGCCGAACTTCATCCACGCGGGCCATATCGtt < 2:600392/143‑1 (MQ=255) ttgttTAGCTGACGATGTGTTTTTTGCGCCGATGCCGGATGCAGCGTTTACGCCGCATCCGGCAGCCGTGTTTATGGGATCTCAATGGCTAAATAATCGCTCGCCCGCCGCCGAACTTCATCCACGCGGGCCATATCGTTTGa < 2:855388/143‑1 (MQ=255) tgttGAGCGGACGATGTGTTTTTTGCGCCGATGCCGGAGGCAGCGCTTACGCCGCATCCGGCAGCCGTGTTTATGGGATCTCAATGGCTAAATAATCGCTCGCCCGCCGCCGAACTTCATCCACGCGGGCCATATCGTTTGAc < 1:925120/143‑1 (MQ=255) tttAGCTGACGATGTGTTTTTTGCGCCGATGCCGGATGCAGCGTTTACGCCGCATCCGGCAGCCGTGTTTATGGGATCTCAATGGCTAAATAATCGCTCGCCCGCCGCCGAACTTCATCCACGCGGGCCATATCGTTTGACTg < 2:851757/143‑1 (MQ=255) gaggtgtTGTGTGCGCCGATGGTGGATGGAGCGTTTACGCCGCATGCGGCAGCCGTGTTTATGGGATCTGAATGGCTAAATAATGGCTCGCCCGCCGCCGAACTTCATCCACGCGGGCCATATCGTTTGACTGCAACGCCGCa < 1:948003/140‑1 (MQ=255) gtgtTTTTTGCGCCGATGCCGGATGCAGCGTTTACGCCGCATCCGGCAGCCGTGTTTATGGGATCTCAATGGCTAAATAATCGCTCGCCCGCCGCCGAACTTCATCCACGCGGGCCCTATCGTTTGACTGCACCGCCGCATCa > 1:495805/1‑143 (MQ=255) gtgtTTTTTGCGCCGATGCCGGATGCAGCGTTTACGCCGCATCCGGCAGCCGTGTTTATGGGATCTCAATGGCTAAATAATCGCTCGCCCGCCGCCGAACTTCATCAACGCGGGCCATAAAGTTTGACTACAACGCCGCATCa > 1:159605/1‑143 (MQ=255) ttttgGCGCCGATGCCGGATGCGGCGTTGACGCCGCCGCAGGCAGCTGTGTTTATTGGATCTCAATGGCTAAATAATCGCTCGCCCGCCGCCGAACTTCATCCACGCGGGCCATATCGTTTGACTGCAACGCCGCATCAAAAt < 2:230896/143‑1 (MQ=255) ttttgGCGCCGATGCCGGAGGCAGCGTTTCCGCCGCATCCGGCAGCCGTGTTTATGGGATCTCAATGGCTAAATAATCGCTCGCCCGCCGCCGAACTTCATCCACGCGGGCCATATCGTTTGACTGCAACGCCGCATCAAAAt < 1:349502/143‑1 (MQ=255) gttgtGCGCGGAGGCCGCATGCAGCGTTGAGGCCGCATCGGGCAGCAGTGTTTATGGGATCTCAATGGCTAAATAATCGCTCGCCCGCCGCCGAACTTCATCCACGCGGGCCATATCGTTTGACTGCAACGCCGCATCAAAAt < 2:159912/139‑1 (MQ=255) tctGCCCCGATGCCGGATGCAGCTTTTACGCCCCACCCGGCAGCCGTGTTTATGGGATCTCAATGGCTAAATCATCGCTCGCCCGCCGCCCAACTTCATCCACGCGGGCCATATCGTTTGACTGCAACGCCGCATCAAAATCg < 2:375396/141‑1 (MQ=255) cgcgcCGATGTCGGATGCAGCGTTTACGCCGCAGCCGGCAGCCGGGTTTATGGGATCTCAATGGCTAAATAATCGCTCGCCCGCCGCCGAACTTCATCCACGCGGGCCATATCGTTTGACTGCAACGCCGCATCAAAATCGGt < 2:677207/142‑1 (MQ=255) gcCGATGCCGGATGCAGCGTTTACGCCGCCTCCGGCAGCCGTGTGTATGGGATCTCAATGGCGAAATGATCGCTCGCCCGCCGCCGAACTTCATCCACGCGGGCCCTATCGTTTCGCCGCAACCCCACCTCAAAACCGGTGAt > 2:244287/1‑143 (MQ=255) tGCCGGATGCGGCGTAAACGCTGCATCCGGCAGCCGTGTTTATGGGATCTCAATGGCTAAATAATCGCTCGCCCGCCGCCGAACTTCATCCACGCGGGCCATATCGTTTGCCTGCAACGCCGCA‑CCAAATCGGTGATCACCCg > 2:799810/1‑143 (MQ=255) gCCGGATGCAGCGTTTACGCCGCATCCGGCAGCCGTGTTTATGGGATCTCAATGGCTAAATAATCGCTCGCCCGCCGCCGAACTTCATCCACGCGGGCCATATCGTTTGACTGCAACGCCGCATCAAAATCGGTGATCACCCg < 1:1009389/143‑1 (MQ=255) cGGATGCGGCGTAAACGCTGCATCCGGCAGCCGTGTTTATGGGATCTCAATGGCTAAATAATCGCTCGCCCGCCGCCGAACTTCATCCACGCGGGCCATATCGTTTGACTGCAACGCCGCATCAAAATCGGTGATCCCCCGGc > 2:347402/1‑143 (MQ=255) ggATGCGGCGTAAACGCTGCATCCGGCAGCCGTGTTTATGGGATCTCAATGGCTAAATAATCGCTCGCCCGCCGCCGCACTTCATCCCCGCGGGCCATATCGTTTGACTGCAACACAACATAAAAATCGGTGATGACCCGGcc > 1:1038272/1‑143 (MQ=255) aGCGTTTACGCCGCATCCGGCAGCCGTGTCTATGGGATCTCAATGGCTAAATAATCGCTCGCCCGCCGCCGAACTTCATCCACGCGGGCCATATCGTTTGACTGCAAcgc > 2:697517/1‑110 (MQ=255) aGCGTTTACGCCGCATCCGGCAGCCGTGTCTATGGGATCTCAATGGCTAAATAATCGCTCGCCCGCCGCCGAACTTCATCCACGCGGGCCATATCGTTTGACTGCAAcgc < 1:697517/110‑1 (MQ=255) | AAAATGATGAGGGTGAAAAACCACAGAGCATTACCAGCATTATCAAAATCAGTTTAACGGTGCTGGTGATAGGTTATGCTCTCGGCAAAATCGCGATGTTGTTTAGCTGACGATGTGTTTTTTGCGCCGATGCCGGATGCAGCGTTTACGCCGCATCCGGCAGCCGTGTTTATGGGATCTCAATGGCTAAATAATCGCTCGCCCGCCGCCGAACTTCATCCACGCGGGCCATATCGTTTGACTGCAACGCCGCATCAAAATCGGTGATCACCCGGCC > NC_000913/681554‑681830 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |