Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_000913 790,931 C→G 6.1% W33C (TGG→TGC galT ← galactose‑1‑phosphate uridylyltransferase

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_000913790,9310CG 6.1% 146.4 / 2.1 57W33C (TGG→TGCgalTgalactose‑1‑phosphate uridylyltransferase
Reads supporting (aligned to +/- strand):  ref base C (26/27);  new base G (2/2);  total (28/29)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.36e-01

AAAGTCATTAGTGAAAACGTAAGTCCCGGTGTAATCGGGGTTTTTATCGCCTGTCACCCGCACATTACCTGCGCAGAGGAAGCAATCTGGATCGTGCGCAGGTAACACCTGTTTGGCTGGCGTTTCCTGCGCCCCCTGCCAGGGGCGCTTAGCGCGGTGCGGTGAAACCAGAATCCATTGCCCGGTGAGCGGGTTGTAGCGGCGATGTGGATGATCAACGGGATTAAATTGCGTCATGGTCGTTCCTTAATCGGGATATCCCTGTGGATGGCGTGA  >  NC_000913/790793‑791068
                                                                                                                                          |                                                                                                                                          
aaaGTCATTAGTGAAAACGTAAGTCCCGGTGTAATCGGGGTTTTTATCGCCTGTCACCCGCACATTACCTGCGCAGAGGAAGCAATCTGGATCGTGCGCAGGTAACACCTGTTTGGCTGCCGTTTCCTGCGCCCCCAGCCAgg                                                                                                                                       >  1:89410/1‑143 (MQ=255)
aaaGTCATTAGTGAAAACGGAAGTCCCGGTGTAATCGGGGTTTTTATCGCCTGTCACCCGCACATTACCTGCGCAGAGGAAGCAATCTGGATCGTGCGCAGGTAACACCTGTTTGGCTGGCGTTTCCTGCGCCCCCTGCCAgg                                                                                                                                       <  1:920595/143‑1 (MQ=255)
    tCATTAGTGAAAACGTAAGTCCCGGTGTAATCGGGGTTTTTATCGCCTGTCACCCGCACATTACCTGCGCAGAGGAAGCAATCTGGATCGTGCGCAGGTAACACCTGTTTGGCTGGCGTTTCCTGCGCCCCCTGCCAGGGgcg                                                                                                                                   >  2:833281/1‑143 (MQ=255)
      aTTAGTGAAAACGTAAGTCCCGGTGTAATCGGGGTTTTTATCGCCTGTCACCCGCACATTACCTGCGCAGAGGAAGCAATCTGGATCGTGCGCAGGTAACACCTGTTTGGCTGGCGTTTCCTGGGCCCCCTGCGCGGGGCCCt                                                                                                                                 >  2:649024/1‑143 (MQ=255)
       ttAGTGAAAACGTAAGTCCCGGTGTAATCGGGGTTTTTATCGCCTGTCACCCGCACATTACCTGCGCAGAGGAAGCAATCTGGATCGTGCGCAGGTAACACCTGTTTGGCTGGCGTTTCCTGCGCCCCCTGCCAGGGGCGGtt                                                                                                                                >  1:502516/1‑143 (MQ=255)
       ttAGTGAAAACGTAAGTCCCGGTGTAATCGGGGTTTTTATCGCCTGTCACCCGCACATTACCTGCGCAGAGGAAGCAATCTGGATCGTGCGCAGGTAACACCTGTTTGGCTGGCGTTTCCTGCGCCCCTGGCAgggggcgcag                                                                                                                               <  1:870153/143‑7 (MQ=255)
            gAAAACGTAAGTCCCGGTGTAATCGGGGTTTTTATCGCCTGTCACCCGCACATTACCTGCGCAGAGGAAGCAATCTGGATCGTGCGCAGGTAACACCTGTTTGGCTGGCGTTTCCTGCGCCCCCTGCCAGGGGGGCTGAccgc                                                                                                                           >  2:698185/1‑143 (MQ=255)
                 cGTAAGTCCCGGTGTAATCGGGGTTTTTATCGCCTGTCACCCGCACATTACCTGCGCAGAGGAAGCAATCTGGATCGTGCGCAGGTAACACCTGGTTGGCTGGCGTTTCCTGCGCCCCCTGCACGGGGCGCTTAGCgcggtgc                                                                                                                      >  2:856708/1‑143 (MQ=255)
                  gTAAGTCCCGGTGTAATCGGGGTCTTTATCGCCTGTCACCCGCACATTACCTGCGCAGAGGAAGCAACCTGGATCGTGCGCAGGTAACACCTGTTTGGCTGGCGTTTCCTGCGCCCCCTGCCAGGGGCGCTTAGCgcggtgcg                                                                                                                     <  1:378093/143‑1 (MQ=255)
                    aaGTCTCGGTGTAATCGGGTTTTTTATCGACTGTCACGCGCACATTACCCGCGCAGAGGAAGCAATCTGGATCGTGCACAGGTAACACCTGTTTGGCTGGCGTTTCCTGCGCCCCCTGCCAGGGGCGCTTAGCgcggtgcggt                                                                                                                   <  1:18325/143‑1 (MQ=255)
                    aaGTCGCGGTGTGGTCGGGGGTTTTATCGCCTGTGGCCCGCACAGTGGCTGCGCAGAGGAAGCGATCTGGAGCGTGCGCAGGTAACACCTGTTTGGCGGGCGTTTCCTGGGCCCCCTGCCAGGGGCGCTTAGCgcggtgcggt                                                                                                                   <  2:208483/143‑1 (MQ=255)
                         ccGGTGTAATCGGGCCTTTTAACGCCGCTCACCCGCACATTACCTGCGCAGAGGCAGCAATCGGCACCGTGCGCAGGTAACACCTGTTTGGCTGGCGTGTCCTGCGCCCCCTGCCAGGGGCGCTTAGCGCGGTGCGGTGAAAc                                                                                                              <  2:86888/143‑1 (MQ=255)
                          cGGTGTAATCGGGGTTTTTATCGCCTGTCACCCGCACATTACCTGCGCAGAGGAAGCAATCTGGATCGTGCGCAGGTAACACCTGTTTGGCTGGCGTTTCCTGCGCCCCCTGCCAGGCGCGCTTAGCGCGGTGCGGGGGAAcc                                                                                                             >  2:218931/1‑143 (MQ=255)
                           ggtgcgaTCGGGGTGTTTATCGCCTGTCACCCGCACATTACCTGCGCAGAGGGAGCAATCTGGATCGTGCGCAGGTAACACCTGTTTGGCTGGCGTTTCCTGCGCCCCCTGCCAGGGGCGCTTAGCGCGGTGCGGTGAAACCa                                                                                                            <  2:653956/137‑1 (MQ=255)
                                   cGGGGTTTTTATCGCCTGTCACCCGCACATTACCTGCGCAGAGGAAGCAATCTGGATCGTGCGCAGGTAACACCTGTTTGGCTGGCGTTTCCTGCGCCCCCTGCCAGGGGCGCTTAGCGCGGTGCGGTGAAACCAGAATCCAt                                                                                                    <  1:1017246/143‑1 (MQ=255)
                                    ggggTTTTTATCGCCTGTCACCCGCACATTACCTGCGCAGAGGAAGCAATCTGGATCGTGCGCAGGTAACACCTGTTTGGCTGGCGTTTCCTGCGCCCCCTGCCAGGGGCGCTTAGCGCGGTGCGGTGAAACCAGAATCCAtt                                                                                                   >  2:89625/1‑143 (MQ=255)
                                      ggTTTTTATCGCCGGTCACCCGCACATTACCTGCGCAGAGGAAGCAATCTGGATCGTGCGCAGATAAACCCGGGTTGTCTGGCGTTTCCTGCGCCCCCTGCCAGGGGCGCTTAGCGCGGTGCGGTGAAACCAGAATCCATTGc                                                                                                 <  1:362976/143‑1 (MQ=255)
                                        tttttATCTCTTGTCATTCTCACATTATCTTCGCATAGGAAGTAATTTGGATCGTGTGTAGTTATCACCTTTTTGTCTGGCGTTTCCTGCGCTCCCTGCCAGGGGCGCTTAGCGCGGTGCTGTGAAACCAGAATCCATTGccc                                                                                               <  2:609489/143‑1 (MQ=255)
                                           ttATCGCCTGTCACCCGCACATTACCTGCGCAGAGGAAGCAATCTGGATCGTGCGCAGGTAACACCTGTTTGGCTGGCGTTTCCTGCGCCCCCTGCCAGGGGCGCTTAGCGCGGTGCGGTGAAACCAGAATCCATTGCCCGGt                                                                                            <  1:98877/143‑1 (MQ=255)
                                             aTCGCCTGTCACCCGCACATTACCTGCGCAGAGGAAGCAATCTGGATCGTGCGCAGGTAACACCTGTTTGGCTGGCGTGTCCTGCGCCCCCTGCCAGGGGCGCTTAGCGCGGTGCGGTGAAACCAGAATCCATTGCCCGGTGa                                                                                          >  2:275243/1‑143 (MQ=255)
                                               cGCCTGTCACCCGGACCTTTCCTGCGCAGAGGAAGCGATCTGGATCGTGCGCAGGTAACACCTGTTTGTCTGGCGTTTCCTGCGCCCCCTGCCAGGGGCGCTTAGCGCGGTGCGGTGAAACCAGAATCCATTGCCCGGTGAGc                                                                                        <  2:108773/143‑1 (MQ=255)
                                               cGCCTGTCACCCGCACATTACCTGCGCAGAGGAAGCAATCTGGATCGTGCGCAGGTAACACCTGTTTGGCTGGCGTTTCCTGCGCCCCCTGCCAGGGGCGCTTAGCGCGGTGCGGTGAAACCAGAATCCATTGCCCGGTGAGc                                                                                        >  1:670894/1‑143 (MQ=255)
                                                   tGTCACCCGCACATTACCTGCGCAGAGGAAGCAATCTGGCTCGTGCGCAGGTAACACCTGTTTGGCTGGCGTTTCCTGCGCCCCCTGCCAGGGGCGCTTAGCGCGGTGCGGTGAAACCAGAATCCATTGCCCGGTGAGCGGGt                                                                                    <  1:598189/143‑1 (MQ=255)
                                                    gTCACCCGCACATTACCTGCGCAGAGGAAGCAATCTGGATCGTGCGCAGGTAACACCTGTTTGGCTGGCGTTTCCTGCGCCCCCTGCCAGGGGCGCTTAGCGCGGTGCGGTGAAACCAGAATCCATTGCCCGGTGAGCGGGtt                                                                                   <  1:373497/143‑1 (MQ=255)
                                                     tCACCCGCACATTACCTGCGCAGAGGAAGCAATCTGGATCGTGCGCAGGTAACACCTGTTTGGCTGGCGTTTCCTGCGCCCCCTGCCCGGGGCGCTTGGCGCGGCGCGGTGAAACCCGAATCCGTTGCCCGGTGAGCGGGtcg                                                                                  >  2:14176/1‑141 (MQ=255)
                                                      cACCCGCACATTACCTGCGCAGAGGAAGCAATCTGGATCGTGCGCAGGTAACAGCTGTTTGGCTGGCGTTTCCTGCGCCCCCTGCCAGGGGCGCTTAGCGCGGTGCGGTGAAACCAGAATCCATTGCCCGGTGAGCGGGTTGt                                                                                 <  2:205596/143‑1 (MQ=255)
                                                       aCCCGCACATTACCTGCGCAGAGGAAGCAATCTGGATCGTGCGCAGGTAACACCTGTTTGGCTGGCGTTTCCTGCGCCCCCTGCCAGGGGCGCTTAGCGCGGTGCGGTGACACCAGCATCCATTGCCCGGTGAGCGGGTTGTa                                                                                >  1:370637/1‑143 (MQ=255)
                                                         ccGCACATTACCTGCGCAGAGGAAGCAATCTGGATCGTGCGCAGGTAACACCTGTTTGGCTGGCGTTTCCTGCGCCCCCCGCCAGGGGCGCTTAGCGCGGTGCGGTGGAACCGGAATCCATTGCCCGGCGAGCGGGGTGTAgc                                                                              >  2:601326/1‑143 (MQ=255)
                                                          cgccccttACCTGCGCAGAGGAAGCAGTCTGGATCGTGCGCAGGTAACACCTGTTTGGCTGGCGTTTCCTGCGCCCCCTGCCAGGGGCGCTTAGCGCGGTGCGGTGAAACCAGAATCCATTGCCCGGTGAGCGGGTTGTAgcg                                                                             <  2:7620/137‑1 (MQ=255)
                                                                    cTGCGCAGAGGAAGCAATCTGGATCGTGCGCAGGTAACACCTGTTTGGCTGGCGTTTCCTGCGCCCCCTGCCAGGGGCGCTTAGCGCGGCGCGGTGAAACCAGAATCCATTCCGCGGCGCGCGGCTTGTAGCGGCGaagcggc                                                                   >  2:62735/1‑137 (MQ=255)
                                                                      gcgcCGAGGCAGCAATCTGGACCGTGCGCAGGTACCACCTGTTTGGCTGGCGTTTCCTGCGCCCCCTGCCAGGGGCGCTTAGCGCGGTGCGGTGAAACCAGAATCCATTGCCCGGTGAGCGGGTTGTAGCGGCGATGTGgatg                                                                 <  1:489483/143‑1 (MQ=255)
                                                                        gcAGAGGAAGCAATCTGGATCGTGCGCAGGTAACACCTGTTTGGCTGGCGTTTCCTGCGCCCCCTGCCAGGGGCGCTTAGCGCGGTGCGGTGAAACCAGAATCCATTGCCCGGTGAGCAGGTTGTAGCGGCGATGTGgattat                                                               >  2:314383/1‑143 (MQ=255)
                                                                             ggACGCAATCTGGATCGTGCGCAGGTAACACCTGTTTGGCTGGCGTTTCCTGCTCCCCCTGCCAGGGGCGCTTAGCTCGGTGCGGTGAAACCAGAATCCATTGCCCGGTGAGCGGGTTGTAGCGGTGATGTGGATGATCAACg                                                          <  1:785241/143‑1 (MQ=255)
                                                                                 gCAATCTGGATCGTGCGCAGGTAACACCTGTTTGGCTGGCGTTTCCTGCGCCCCCTGCCAGGGACGCTTCAGGTGTTGCGGTGAAACCAGAATCCATTGCCCGGTGAGCGGGTTGTAGCGGCGATGTGGATGATCAACGGGAt                                                      >  1:155632/1‑143 (MQ=255)
                                                                                         gctCGTGAGCAGGTACCCCCTGTCTGGCTGGCGTCTCCTGCGCCCCCCGCTAGGGGCGCTTAGCGCGGTGCGGGGAAACCAGACTCTATTGCCCGGTGAGTGGGTTGTAGCGGCGATGTGGATGATCAACGGGATTAAATTGc                                              <  1:194094/141‑1 (MQ=255)
                                                                                         gATCGTGCGCATGTAACACCAGTGTGGCTGGCGTTTCCTGCGCCCCCTGCCGGAGGCGCTTAGCGCGGTGCGGTGAAACCAGAATCCATTGCCCGGTGAGCGGGTTGTAGCGGCGATGTGGATGATCAACGGGATTAAATTGc                                              <  1:612982/143‑1 (MQ=255)
                                                                                         gATCGGGCGCAGGTAACACCTGTTTGGCTGGCGTTTCCTGCGCCCCCTGCCAGGGGCGCTTAGCGCGGTGCGGTGAAACCAGAATCCATTGCCCGGTGAGCGGGTTGTAGCGGCGATGTGGATGATCAACGGGATTAAATTGc                                              <  1:448634/143‑1 (MQ=255)
                                                                                           tCGGGCGCAGGTAACACCTGTCTGGCTGGCGTTTCCTGCGCCCCCTGCCAGGGGCGCTTCGCGCGGTGCTGTGAAACCAGAATCCATTGCCCGGTGAGCGGGTTGTAGCGGCGATGTGGATGATCAACGGGATTAAATTGCGt                                            <  1:566126/143‑1 (MQ=255)
                                                                                                 gcAGGTAACACCTGTTTGGCTGGCGTTTCCTGCGCCCCCTGCCAGGGGCGCTTAGCGCGGTGCGGTGAAACCAGAATCCATTGCCCGGTGAGCGGGTTGTAGCGGCGCTGAAGATCATCAACGGGACTAAAGGGCGTCATgga                                      >  2:384008/1‑142 (MQ=255)
                                                                                                 gcAGGTAACACCTGTTTGGCTGGCGTTTCCTGCGCCCCCTGCCAGGGGCGCTTAGCGCGGTGCGGTGAAACCAGAATCCATTGCCCGGTGAGCGGGTTGTAGCGGCGATGTGGATGATCAAAGAGATTAAATTGCGTCATGGt                                      >  2:716263/1‑143 (MQ=255)
                                                                                                     gTATCACCTGTTTGGCTGGCGCTTCCTGCGCCCCCTGCCAGGGGCGCTTAGCGCGGTGCGGTGAAACCAGAATCCATTGCCCGGTGAGCGGGTTGTAGCGGCGATGTGGATGATCAACGGGATTAAATTGCGTCATGGTCGtt                                  <  2:621527/143‑1 (MQ=255)
                                                                                                        acacCTGTTTGGCTGGCGTTTCCTGCGCCCCCTGCCAGCGGCGCTTAGCGCGGTGCGGTGAAACCAGAATCCATTGCCCGGTGAGCGGGTCGTAGCGGCGATGTGGAGGCACAGCGAGATTAAATTGCGGCATGGGCGTACCt                               >  2:273095/1‑143 (MQ=255)
                                                                                                             tGTTTGGCTGGCGTTTCCTGCGCCCCCTGCCAGGGGCGCTTAGCGCGGTGAGGTGAAACCAGAATCCGGTGACCACAAGGCGGGTTGTAGCGGCGATGCGGATGATCAACGGGATTAGATTGCGTCATGGTCGTTCCTTAATc                          >  2:392234/1‑143 (MQ=255)
                                                                                                                ttGGCTGGCGTTTCCTGCGCCCCCTGCCAGGGGCGCTTAGCGCGGTGCGGTGAAACCAGAATCCCTTGCCCGGTGCGCGGGTTGTAGCGGCGATGTGGATGATCAACGGGATTAAATTGCGTCATGGTCGTTCCTTAATCggg                       <  1:698185/143‑1 (MQ=255)
                                                                                                                ttGGCGGGCGTTTCCTGCGCCCCCTGCCAGGGGCGCTTAGCGCGGTGCGGTGAAACCAGAATCCATTGCCCGGTGAGCGGGTTGTAGCGGCGATGTGGATGATCAACGGGATTAAATTGCGTCATGGTCGTTCCTTAATCggg                       <  1:744600/143‑1 (MQ=255)
                                                                                                                       gcGTTTCCTGCGCCCCCTGCCAGGGGCGCTTAGCGCGGTGCGGTGAAACCAGAATCCATTGCCCGGTGAGCGGGTTGTAGCGGCGATGTGGATGATCAACGGGATTAAATTGCGTCATGGTCGTTCCTTAATCGGGATATccc                >  1:277911/1‑143 (MQ=255)
                                                                                                                           ttCCTGCGCCTCCGGCCAGGGGCGCTTAGCGGGGGGCTGTGACACCGGAATCCATTGCCCGGTGGGCGGGTTGTAGCGGCGATGTGGATGATCAACGGGATTAAATTGCGTCATGGTCGTTCCTTAATCGGGATATCCCtgtg            <  2:164693/143‑1 (MQ=255)
                                                                                                                           ttCCTGCGCCCCCTGCCAGGGGCGCTTAGCGCGGTGCGGTGAAACCAGAATCCATTGCCCGGTGAGCGGGTTGTAGCGGCGATGTGGATGTTGAACGAGATTAAATTGCGTCATGGTCGTTCCTTAACCGAGATATcaatttg            >  2:945952/1‑137 (MQ=255)
                                                                                                                           tgccTGCGCCCCCTGGCAGGGGCGCTTAGCGCGGTGCGGTGAAACCAGAATCCATTGCCCGGTGAGCGGGTGGTAGCGGCGATGTGGATGATCAACGGGATTAAATTGCGTCATGGTCGTTCCTTAATCGGGATATCCCtgtg            <  2:1088350/141‑1 (MQ=255)
                                                                                                                              gtGCGCCCCCTGCCAGGGGCGCTTAGCGCGGTGCGGTGAAACCAGAATCCATTGCCCGGTGAGCGGGTTGTAGCGGCGATGTGGATGATCAACGGGATTAAATTGCGTCATGGTCGTTCCTTAATCGGGATATCCCTGTGGAt         <  1:722976/142‑1 (MQ=255)
                                                                                                                              cTGCGCCCCCTGCCAGGGGCGCTTAGCGCGGTGCGGTGAAACCAGAATCCATTGCCCGGTGAGCGGGTTGTAGCGGCGATGTGGATGATCAACGGGATTAAATTGCGTCATGGTCGTTCCTTAATCGGGATATCCCTGTGGAt         <  1:993808/143‑1 (MQ=255)
                                                                                                                               tGCGCCCCCTGCCAGGGGCGCTTAGCGCGGTGCGGTGAAACCAGAATCCATTGCCCGGTGAGAGGGGTGTAGCGGCGATGTGGATGATCAACGGGATTAAATTGCGTCCTGGTCGCTCCTTAATCGGGATATCCCTGTGGCTg        >  2:728670/1‑143 (MQ=255)
                                                                                                                                gcgcCCCCTGCCAGGGGCGCTTAGCGCGGTGCGGTGAAACCAGAATCCATTGCCCGGTGAGCGGGTTATAGCGGCGATGTGGATGATCAACGGGGTTAAATTGCGTCATGGTCGTTCCTTAATCGGGAAATCCCCGTggcgtg       >  2:558472/1‑139 (MQ=255)
                                                                                                                                  cgccccTGGCAGGGGGCGCTTAGCGCGGTGCGGTGAAACCAGAATCCATTGCCCGGTGAGCGGGTTGTAGCGGCGATGTGGATGATCAACGGGATTAAATTGCGTCATGGTCGTTCCTTAATCGGGATATCCCTGTGGATGGc      >  2:535721/3‑143 (MQ=255)
                                                                                                                                  cgccccTGGCAGGGGGCGCTTAGCGCGGTGCGGTGAAACCAGAATCCATTGCCCGGTGAGCGGGGTGTAGCGGCGATGTGGATGATCAACGGGATTAAATTGCGTCATGGTCGTTCCTTAATCATGATATCCCTGTGGAAGGc      >  2:458780/3‑143 (MQ=255)
                                                                                                                                   cccccTGCCAGGGGCGCTTAGCGCGGTGCGGTGAACCCAGAATCCATTGCCCGGTGAGCGGGTGGTAGCGGCGATGTGGATGATCAACGGGCTTAAATTGCGTCATGGTCGCGCCGTAATCGGGATATCGCAGTGGATGGAGt    >  2:879233/1‑143 (MQ=255)
                                                                                                                                     cccTGCCAGGGGCGCTTAGCGCGGTGCGGTGAAACCAGAATCCATTGCCCGGTGAGCGGGTTGTAGCGGCGATGTGGATGATCAACGGGATTAAATTGCGTCATGGTCGTTCCTTAATCGGGATATCCCTGTGGATGGCGTGa  >  1:853738/1‑143 (MQ=255)
                                                                                                                                          |                                                                                                                                          
AAAGTCATTAGTGAAAACGTAAGTCCCGGTGTAATCGGGGTTTTTATCGCCTGTCACCCGCACATTACCTGCGCAGAGGAAGCAATCTGGATCGTGCGCAGGTAACACCTGTTTGGCTGGCGTTTCCTGCGCCCCCTGCCAGGGGCGCTTAGCGCGGTGCGGTGAAACCAGAATCCATTGCCCGGTGAGCGGGTTGTAGCGGCGATGTGGATGATCAACGGGATTAAATTGCGTCATGGTCGTTCCTTAATCGGGATATCCCTGTGGATGGCGTGA  >  NC_000913/790793‑791068

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: