Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_000913 | 2,407,898 | A→C | 11.9% | Q113P (CAG→CCG) ‡ | alaA → | glutamate‑‑pyruvate aminotransferase AlaA |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_000913 | 2,407,898 | 0 | A | C | 11.9% | 107.7 / 10.8 | 51 | Q113P (CAG→CCG) ‡ | alaA | glutamate‑‑pyruvate aminotransferase AlaA |
Reads supporting (aligned to +/- strand): ref base A (22/23); new base C (3/3); total (25/26) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 4.73e-03 |
AAGGGTATTGCGATTCCAAAGGTCTTTACTCCGCGCGTAAAGCCATCATGCAGCACTACCAGGCTCGTGGCATGCGTGATGTTACCGTGGAAGATATTTACATCGGCAATGGTGTATCGGAGCTTATCGT‑TCAGGCAATGCAGGCATTG‑CTGAACAGCGGGGACGAAATGTTGGTTCCTGCACCAGATTACCCACTCTGGACCGCGGCGGTTTCGCTTTCCAGCGGTAAAGCGGTGCATTATCTTTGCGATGAATCCTCTGACTGGTTCCCGGACCTCGATGAT > NC_000913/2407757‑2408040 | atgggTATAGCGAGTCGGAAGTGCTGTAGTCCGTGCGTAAAGCCATCATGGAGCACTACCTGGCTTGTGTCATGCTTGATGTTACCGTGGAAGATATTTACATCGTCAATGGTGTATCGGAGCTTATCGT‑TCAGGCAATGCAg < 2:630563/141‑1 (MQ=255) ggTATTGCGATTCCAAAGGTCTTTACTCCGCGCGTAAAGCCATCATGCAGCACTACCAGGCTCGTGGCATGCGTGATGTTACCGTGGAAGATATTTACATCGGCAATGGTGTATCGGAGCTTATCGT‑TCAGGCAATGCAGGCa > 1:921726/1‑143 (MQ=255) gTATTGCGATTCCAAAGGTCTTTACTCCGCGCGTAAAGCCATCATGCAGCACTACCAGGCTCGTGGCATGCGTGATGTTACCGTGGAAGATATTTACATCGGCAATGGTGTATCGGAGCTTATCGT‑TAAGGCAATGCAGGCAt > 2:620679/1‑143 (MQ=255) ttGCGATTCCAAAGGTCTTTACTCCGCGCGTAAAGCCATCATGCAGCACTACCAGGCTCGTGGCATGCGTGATGTTACCGTGGAAGATATTTACATCGGCAATGGCGTATCGGACCTTATCGT‑TCAGGCAATGCACGCATCG‑c > 2:207189/1‑143 (MQ=255) tGCGATTCCAAAGGTCTTTACTCCGCGCGTAAAGCCATCATGCAGCACTACCAGGCTCGTGGCATGCGTGATGTTACCGTGGAAGATATTTACATCGGCAATGGTGTATCGGAGCTTATCGT‑TCAGGCAATGCCTGCATTG‑cc < 1:772639/143‑2 (MQ=255) tGCGATTCCAAAGGGCAGTACGGCGCGCGTAAAGCCAGCATGCAGCACTGCTAGGCTCGTGGCATGCGTTATGTTACCGTGGAAGATATTTACATCGGCAATGGTGTATCGGAGCTTATCGT‑TCAGGCAATGCAGGCATTG‑Ct < 2:590931/143‑1 (MQ=255) tGCGAGTCCAAAGGTCTTTACTCCGCGCGTAAAGCCATCATGCAGCACTACCAGGCTCGTGGCATGCGTGATGTTACCGTGGAAGATATTTACATCGGCAATGGTGTATCGGAGCTTATCGT‑TCAGGCAATGCCTGCATTG‑cc < 1:910417/143‑2 (MQ=255) gCGATGCCAAAGGTCTTTACTCCGCGCGTAAAGCCATCATGCAGCACTACCAGGCTCGTGGCATGCGTGATGTTACCGTGGAAGATATTTACATCGGCAATGGTGTATCGGAGCTTATCGT‑TCAGGCAATGCAGGCATTG‑CTg < 1:964982/143‑1 (MQ=255) gATTCCAAAGGTCTTTACTCCGCGCGTAAAGCCATCATGCAGCACTACCAGGCTCGTGGCATGCGTGATGTTACCGTGGAAGATATTTACATCGGCGATGGTGTATCGGAGCTTATCGT‑TCAGGCAATGCAGGCATTG‑CTGaa > 1:997652/1‑143 (MQ=255) ttCCAAAGGTCTTTACTCCGCGCGTAAAGCCATCATGCAGCACTACCAGGCTCGTGGCATGCGTGATATTACCGTGGAAGATATTTACATCGGCAATGGTGTATCGGAGCTTATCGT‑TCAGGCAATGCAGGCATTG‑CTGAACa > 2:556754/1‑143 (MQ=255) ttCCAAAGGTCTGTCCTCCGCGCGCAAAGCCATCATGCAGCACTACCAGGCTCGTGGCATGCGTGATGTTACCGTGGAAGATATTTACATCGGCAATGGTGTATCGGAGCTTATCGT‑TCAGGCAATGCCTGCATTGCCTGAAc < 1:918330/143‑1 (MQ=255) tCCAAAGGTCTTTACTCCGCGCGTAAAGCCATCATGCAGCACTACCAGGCTCGTGGCATGCGTGATGTTACCGTGGAAGATATTTACATCGGCAATGGTGTATCGGAGCTTATCGT‑TCAGGCAATGCAGGCATTG‑CTGAACAg < 1:680905/143‑1 (MQ=255) aaaGGTCTTTACTCCGCGCGTAAAGCCATCATGCAGCACTACCAGGCTCGTGGCATGCGTGATGTTACCGTGGCAGATATTTACATCGGCACTGGTGTATCGGAGCTTATCGT‑TCCGGCAATGCAGGCATTG‑CTGAACAGCgg > 2:361559/1‑143 (MQ=255) aaaGGTCGTTGCTCCGGGCGTAAAGCCATCGTGCAGCACTACCAGGCTCGTGGCATGCGGGATGTTACCGTGGAAGATATTTACATCGGCAATGGTGTATCGGAGCTTATCGT‑TCAGGCAATGCAGGCATTG‑CTGAACAGCgg < 2:762768/143‑1 (MQ=255) aaGGCCTGTCCTCCCCGCGTAAAGCCATCATGCAGCACTACCAGGCTCGTGGCAGGCGTGATGTTACCGTGGAAGATATTTACATCGGCAATGGTGTATCGGAGCTTATCGT‑TCAGGCAATGCAGGCATTG‑CTGAACAGCggg < 1:178572/143‑1 (MQ=255) ggTCTTTACTCCGCGCGTAAAGCCATCATGCAGCACTACCAGGCTCGTGGCATGCGTGATGTTACCGTGGAAGATATTTACATCGGCAATGGTGTCTCGGAGCTTATCGT‑TCAGGCAATGCAGGCATTG‑CTGAACAGCGGGGa > 2:574602/1‑143 (MQ=255) gTCTTTACTCGGCGCGTAAAGCGATCATGCAGCACTACCAGGCTCGTGGCATGCGTGATGTTGCCGTGGGCGCTATTTCCATCGGCAATGGGGTATCGGAGCTTATCGT‑CCAGGCGATGGAGGCAGTG‑CTGGAGTGCGGGCAc > 2:764097/1‑143 (MQ=255) tcgttACTCCGCGCGTAAAGCCATCATGCAGCACTACCAGGCTCGTGGCATGCGTGATGTTACCGTGGAAGATATTTACATCGGCAATGGTGTATCGGAGCTTATCGT‑TCAGGCAATGCAGGCATTG‑CTGAACAGCGGGGACg < 2:649924/140‑1 (MQ=255) cTTTAAGCCGGGCGTAAAGCCATCATGCAGCACTACCAGGCTCGTGGCATGCGTGATGTTACCGTGGAAGATATTTACATCGGCAATGGTGTATCGGAGCTTATCGT‑TCAGGCAATGCAGGCATTG‑CTGAACAGCGGGGACGa < 1:730576/143‑1 (MQ=255) tCCGCGCGTAAAGCCATCATGCAGCACTACCAGGCTCGTGGCATGCGTGATGTTACCGTGGAAGATATTTACATCGGCAATGGTGTATCGGAGCTTATCGT‑TCAGGCAATGCAGGCATTG‑CTGAACAGCGGGGACGAAATGtt > 1:729129/1‑143 (MQ=255) tagaGCCAGCATGCAGCACTCCCAGGCTCGTGGCATGCGTGATGTTACCGTGGAAGATATTTACATCGGCAATGGTGTATCGGAGCTTATCGT‑TCAGGCAATGCAGGCATTG‑CTGAACAGCGGGGACGAAATGTTGGTTCCTg < 1:270178/140‑1 (MQ=255) tAACGCCATCATGCAGTACGACCAGGCTCGTGGCATGCGGGATGGTACCGTGGAAGATATGTACATCGGCAATGGTGTATCGGAGCTTAGCGT‑TCAGGCAATGCAGGCATTG‑CTGAACAGCGGGGACGAAATGTTGGTTCCTg < 2:308745/143‑1 (MQ=255) aaaGCCATCATGCAGCACTACCAGGCTCGTGGCATGCGTGATGTTACCGTGGAAGATATTTACATCGGCAATGGTGTATCGGAGCTTATCGT‑TCAGGCAATGCAGGCATTG‑CTGAACAGCGGGGACGAAATGTTGGTTCCTGc > 1:995376/1‑143 (MQ=255) ccATCATGCAGCACTACCAGGCTCGTGGCATGCGTGATGTTACCGTGGAAGATATTTACATCGGCAATGGTGTATCGGAGCTTATCGT‑TCAGGCAATGCAGGCATTG‑CTGAACAGCGGGGACGAAATGTTGGTTCCTGCACCa < 1:798345/143‑1 (MQ=255) agtctgcaCGAGCAGGCTCGTGGCATGCGTGATGGTACCGTGGAAGAGATGTACATCGGCAATGGCGTCTGGTACCTTATCCTATCA‑TCATTGTATGCATTG‑CTGAACAGCGGGGACGAAATGTTGGTTCCTGCACCAGATTa < 2:392245/138‑1 (MQ=255) gcagcaCTACCCGGCTCGTGGCATGCGGGATGTTACCGTGGAAGATATTTACAGCGGCAATGGTGTATCGGAGCTTATCGT‑TCAGGCAATGCAGGCATTG‑CTGAACAGCGGGGACGAAATGTTGGTTCCTGCACCAGATTAcc < 2:295189/143‑1 (MQ=255) tACCAGGCTCTTGGCTTGCGTGATGTTACCGTGGAAGATATTTACATCGGCAATGGTGTATCGGAGCTTATCGT‑TCAGGCAATGCATGCATTG‑CTGAACAGCGGGGACGAAATGTTGGTTCCTGCACCAGATTACCCACTCTg < 2:440107/143‑1 (MQ=255) caagCTCGTGGCATGCGTGATGTTACCGTGGAAGATATTTACATCGGCAATGGTGTATCGGAGCTTATGGT‑TAAGGCAACACAGGCATTG‑CTGAACAGCGGGGGCGAAATGTTGGATGCGGGAGCCGATTACCCACACCGGag > 2:311134/4‑142 (MQ=255) gTGATGTTACCGTGGAAGATATTTACATCGGCAATGGTGTATCGGAGCTTATCGT‑TCAGGCAATGCAGGCATTG‑CTGAACAGCGGGGACGAAATGTTGGTTCCTGCACCAGATTACCCACTCTGGACCGCGGCGGTTTCGCtt > 1:797711/1‑143 (MQ=255) gtgtgtACCGTGTAAGATATCTACATCGGGAAGGGTGGATGGGAGCTTATCGT‑TCAGGCAATGCAGGCATTG‑CGGAACAGCGGGGACGAAATGTTGGTTGCTGCACCAGAGTACCCACTCTGGACCGCGGCGGTTTCGCTTTc < 2:339747/138‑1 (MQ=255) gTTACCGTGGAAGATATTTACATCGGCAAGGGTGTATCGGAGCTTATCGT‑TCAGGCAATGCAGGCATTG‑CTGAACAGCGGGGACGAAATGTTGGTTCCTGCACCAGATTACCCACTCTGGACCGCGGCGGTTTCGCTTTCCAg < 1:255140/143‑1 (MQ=255) gaCCGTGTAACATATTTACATGGGCAGTGGTGTATCGGAGCTTATCGT‑TCAGGCACTGCAGGCATTG‑CTGAACAGCGGGGACGAAATGTTGGTTCCTGCACCAGATTACCCACTCTGGACCGCGGCGTTTTCGCTTTCCAGCg < 2:102097/142‑1 (MQ=255) aCCGTGGAAGATATTTACATCGGCAATGGTGTATCGGAGCTTATCGT‑TCAGGCAATGCAGGCATTG‑CTGAACAGCGGGGACGAAATGTTGGTTCCTGCACCAGATTACCCACTCTGGACCGCGGCGGTTTCGCTTTCCAGCgg > 1:559033/1‑143 (MQ=255) ccGTGGAAGATATTTACATCGGCAATGGTGTATCGGAGCTTATCGT‑TCAGGCAATGCAGGCATTG‑CTGAACAGCGGGGACGAAATGTTGGTTCCTGCACCAGATTACCCACTCTGGACCGCGGCGGTTTCGCTTTCCAGCGGt > 1:728154/1‑143 (MQ=255) cGTGGAAGATATTTACATCGGCAATGGTGTATCGGAGCTTATCGT‑TCAGGCAATGCAGTCATTG‑CTGAACAGCGGGGACGAAATGTTGGTTCCTGCACCAGATTACCCACTCTGGACCGCGGCGGTTTCGCTTTCCAGCGGTa > 1:530571/1‑143 (MQ=255) atTTGCATCTGCAATCTGGTATCGGAGCTTGTCGT‑TCATGTATGTCAGGCATTG‑CTGAACAGCGGGGACGAAATGTTGGTTCCTGCATTAGATCACCCACTCTGGTCCTCGGCGGTTTCGCTTTTCACCGGTAAAGCGGTGCa < 2:837790/143‑1 (MQ=255) ttACATCGGCAATGGTGTATCGGAGCTTATCGT‑TCAGGCAATGCAGGCATTG‑CTGAACAGCGGGGACGAAATGTTGGTTCCTGCACCAGATTACCCACTCTGGACCGCGGCGGTTTCGCTTTCCAGCGGTAAAGCGGTGCAtt > 1:45420/1‑143 (MQ=255) ttACATCGGCAATGGTGTATCGGAGCTTATCGT‑TCAGGCAATGCAGACATTC‑ATGAACATGTGGGCCGACCCGTCGGGCCCGTCACCAGATTACCCACTCTGGACCGCGGCGGTTTCGCTTTCCAGCGGTAACGCGCTGCAta > 1:1101756/1‑142 (MQ=255) ttACACCGGCAATGGTGTATCGGAGCTTATCGT‑GCAGGCAATGCAGGCATTG‑CTGAACAGCGGGGACGAAATGTTGGTTCCTGCACCAGATTACCCACTCTGGACCGCGGCGGTTTCGCTTTCCAGCGGTAAAGCGGTGCAtt < 1:598203/143‑1 (MQ=255) tcacgtCGGCAATGGTGTATCGGGGCTTATCGT‑TCAGGCAATGCAGGCATTG‑CTGAACAGCGGGGACGAAATGTTTGTTCCTGCACCAGATTACCCACTCTGGACCGCGGCGGTTTCGCTTTCCAGCGGTAAAGCGGTGCAtt < 2:347403/138‑1 (MQ=255) cataccGGCAGTTGTGTGACGGAGCTTATCGT‑TCAGGCAATGCAGGCATTG‑CTGAACAGCGGGGACGAAATGTTGGTTCCTGCACCAGATTACCCACTCTGGACCGCGGCGGTTTCGCTTTCCAGCGGTAAAGCTGTGCATTa < 2:1065436/138‑1 (MQ=255) cGGCAATGGTGTATCGGAGCTTATCGT‑TCAGGCAATGCAGGCATTG‑CTGAACAGCGGGGACGAAATGTTGGTTCCTGCACCAGATTACCCACTCTGGACCGCGGCGGTTTCGCTTTCCAGCGGTAAAGCGGTGCATTATCttt > 2:901796/1‑143 (MQ=255) gtcAATGGTGTAGCGGAGCTTATCGT‑TCAGGCAATGCAGGCATTG‑TTGAACAGCGGGGACGAAATGTTGGTTCCTGCACCAGATTACCCACTCTGGACCGCGGCGGTTTCGCTTTCCAGCGGTAAAGCGGTGCATTATCTTTg < 1:445490/141‑1 (MQ=255) gCAATGGTGTATCGGAGCTTATCGT‑TCAGGCAATGCAGGCATTG‑CTGAACAGCGGGGACGAAATGTTGGTTCCTGCACCAGATTACCCACTCTGGACCGCGGCGGTTTCGCTTTCCCGCGGTAACGCGGTGCATTATCtttcc > 2:995760/1‑141 (MQ=255) gAGCTTAACGT‑TCAGGCAATGCAGGCATTG‑CTGAACAGCGGGGACGAAATGTTGGTTCCTGCACCAGATTACCCACTCTGGACCGCGGCGGTTTCGCTTTCCAGCGGTAAAGCGGTGCATTATCTTTGCGATGAATCCTCTGa < 1:264205/143‑1 (MQ=255) gT‑TCA‑GCAATGCCTGCATTGCCTGAACAGCGGGGACGAAATGTTGGTTCCTGCACCAGATTACCCACTCTGGACCGCGGCGGTTTCGCTTTCCAGCGGTAAAGCGGTGCATTATCTTTGCGATGAATCCTCTGACTGGTTccc > 1:604104/1‑143 (MQ=255) cagCAATGCCTGCATTGCCTGAACGGCGGGGACGAAATGTTGGTTCCTGCACCAGATTACCCACTCTGGACCGCGGCGGTTTCGCTTTCCAGCGGTAAAGCGGTGCATTATCTTTGCGGTGAATCCTCTGACTGGTTCCCGGa > 1:817684/3‑143 (MQ=255) cagCAATGCCTGCATTGCCTGAACAGCGGGGACGAAATGTTGGTTCCTGCACCAGATTACCCACTCTGGACCGCGGCGGTTTCGCTTTCCAGCGGTAAAGCGGTGCATTCTCTTTGCGATCAATCCTCTGCATGGGTCCCGGa > 2:157254/3‑143 (MQ=255) aGGCAATGCAGGCATTG‑CTGAACAGCGGGGACGAAATGTTGGTTCCTGCACCAGATTACCCACTCTGGACCGCGGCGGTTTCGCTTTCCAGCGGTAAAGCGGTGCATTATCTTTGCGCTGAATCCTCTGACTGGTTCCAGGAc > 2:203612/1‑143 (MQ=255) ggCAATGCAGGCATTG‑CTGAACAGCGGGGACGAAATGTTGGTTCCTGCACCAGATTACCCACGCTGGACCGCGGCGGTTTCGCTTTCCAGCGGTCAAGCGGTGCATTATCTTTGCGATGAATCCTCTGACTGGTTCCCGGccc > 2:559924/1‑143 (MQ=255) cAGGCATTG‑CTGAACAGCGGGGACGAAATGTTGGTTCCTGCACCAGATTACCCACTCTGGACCGCGGCGGTATCGCTTTCCCGCGGGAAAGCGGTGCATTATCTTCGCGATGAATCCTCTGACTGGCTCCCGGACCTCgatgc > 2:148984/1‑142 (MQ=255) aGGCATTG‑CTGAACAGCGGGGACGAAATGTTGGTTCCTGCAGTAGATTACCCACTCTGGACCGCGGCGGTTTCGCTTTCCAGCGGTAAAGCGGTGCATTATCTTTGCGATGTATCCTCTGACTGGTTCCCGGACCTCgatgat > 1:701512/1‑143 (MQ=255) aGGCATTG‑CTGAACAGCGGGGACGAAATGTTGGTTCCTGCACCAGATTACCCACTCTGGACCGCGGCGGGTTCGCTTTCCAGCGGCAAAGCGGTGCATTACCTTTGCGACGAATCCTCTGACCGCTTCCCCGACCTCgatgat > 2:1108539/1‑143 (MQ=255) | AAGGGTATTGCGATTCCAAAGGTCTTTACTCCGCGCGTAAAGCCATCATGCAGCACTACCAGGCTCGTGGCATGCGTGATGTTACCGTGGAAGATATTTACATCGGCAATGGTGTATCGGAGCTTATCGT‑TCAGGCAATGCAGGCATTG‑CTGAACAGCGGGGACGAAATGTTGGTTCCTGCACCAGATTACCCACTCTGGACCGCGGCGGTTTCGCTTTCCAGCGGTAAAGCGGTGCATTATCTTTGCGATGAATCCTCTGACTGGTTCCCGGACCTCGATGAT > NC_000913/2407757‑2408040 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |