Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_000913 | 2,902,100 | G→A | 7.2% | A69T (GCC→ACC) | ygcE → | putative sugar kinase YgcE |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_000913 | 2,902,100 | 0 | G | A | 7.2% | 164.1 / 2.9 | 65 | A69T (GCC→ACC) | ygcE | putative sugar kinase YgcE |
Reads supporting (aligned to +/- strand): ref base G (33/26); new base A (3/2); total (36/29) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 6.66e-01 |
CTGGAAGGTAACGTGGTTTGCGAAGGCAAAGGCTTATTACAGCCGATGCACACGCCAGATGCCGATACTGCAGAACATCCTGACGACGATTTATGGGCATCATTATGTTTTGCCGGTCACGATTTGATGAGTCAGTTTGCCGGGAATAAAGAAGATATTGTCGGTATTGGTCTGGGATCCATCCGTTGCTGCCGTGCGTTATTGAAAGCCGATGGCACGCCTGCTGCGCCGTTGATTAGCTGGCAGGATGCACGCGTTACACGCCCTTACGAACA > NC_000913/2901962‑2902236 | cTGGAAGGTAACGTGGTTTGCGAAGGCTAAGGCTTTTTACAGCCGGTGCACACGCCAGATGCCGATACTGCAGAACATCCTGACGACGATTTATGGGCATCATTATGTTTTGCCGGTCACGATTTGATGAGTCAGTTTGCCgg < 2:122708/143‑1 (MQ=255) cTGGAAGGTAACGTGGTTTGCGAAGGCAAAGGCTTATTACAGCCGATGCACACGCCAGATGCCGATACTGCAGAACATCCTGACGACGATTTATGGGCATCATTATGTTTTGCCGGTCACGATTTGATGAGTCAGTTTGCCgg < 2:143379/143‑1 (MQ=255) gAAGGTAACGTGGTTTGCGAAGGCAAAGGCTTATTACAGCCGATGCACACGCCAGATGCCGATACTGCAGAACATCCTGACGACGATTTATGGGCATCATTATGTTTTGCCGGTCACGATTTGATGAGTCAGTTTGCCGGGaa > 1:261409/1‑143 (MQ=255) gAAGGTAACGTGGTTTGCGAAGGCAAAGGCTTATTACAGCCGATGCACACGCCAGATGCCGATACTGCAGAACATCCTGACGACGATTTATGGGCATCATTATGTTTTGCCGGTCACGATTTGATGAGTCAGTTTGCCGGGaa < 1:742259/143‑1 (MQ=255) aaCGTGGTTTGCGAAGGCAAAGGCTTATTACAGCCGATGCACACGCCAGATGCCGATACTGCAGAACATCCTGACGACGATTTATGGGCATCATTATGTTTTGCCGGTCACGATTTGATGAGTCAGTTTGCCGGGaagctaga > 2:1005353/1‑137 (MQ=255) gTTTGCGAAGGCAAAGGCTTATTACAGCCGATGCACACGCCAGATGCCGATACTGCAGAACATCCTGACGACGATTTATGGGCATCATTATGTTTTGCCGGCCACGATTTGATGAGTCAGTTTGCCGGGAATAAAGAAGctat > 2:858146/1‑143 (MQ=255) gAAGGCAAAGGCTTATTACAGCCGATGCACACGCCAGATGCCGATACTGCAGAACATCCTGACGACGATTTCTGGGCATCATTATGTTTTGATGCTCACGATTTGATGAGTCAGTTTGCCGGGAATAAAGAAGATATTGTCgg > 1:567040/1‑143 (MQ=255) gAAGGCAAAGGCTTATTACAGCCGATGCACACGCCAGATGCCGATACTGCAGAACATCCTGACGACGATTTATGGGCATCATTATGTTTTGCCGGTCACGATTTGATGAGTCAGTTTGCCGGGAATAAAGAAGATATTGTCgg < 1:920018/143‑1 (MQ=255) aaGGCAAAGGCTTATTACAGCCGATGCACACGCCAGATGCCGATACTGCAGAACATCCTGACGACGATTTATGGGCATCATTATGTTTTGCCGGTCACGATTTGATGAGTCAGTTTGCCGGGAATAAAGAAGATATTGTCGGt > 2:904730/1‑143 (MQ=255) cAAAGGCTTATTACAGCCGATGCACACGCCAGATGCCGATACTGCAGAACATCGGGACGACGATTTATGGGCATCATTATGTTTTGCCGGTCACGATTTGATGAGTCAGTTTGCCGGGAATAAAGAAGATATTGTCGGTATTg < 1:17595/143‑1 (MQ=255) aaGGCTTATTACAGCCGATGCACACGCCAGATGCCGATACTGCAGAACATCCTGACGACGCTTTATGGGCCTCATTCTGTTTTGCCGGTCACGATTTGCTGAGTCAGTTTGCCGGGCATAAAGACGACATTGTCGGTATTCGt > 2:1089475/1‑143 (MQ=255) gCTTAGTGCAGCCGATGCACACGCCAGTTGCCGATACTGCAGACCATCCTGACGACGATTTATGGGCATCATTATGTTTTGCGGGTCACGATTTGATGAGTCAGTTTGCCGGGAATAAAGAAGATATTGTCGGTATTGGTCTg < 2:114903/143‑1 (MQ=255) ttattaCAGCCGATGCACACGCCAGATGCCGATACTGCAGAACATCCTGACGACGATTTATGGGCATCATTATGTTTTGCCGGTCACGATTTGATGCGTCAGTTTGCCGGGAATAAAGAAGATATTGGCGGTATTGGTCgggg > 2:930683/1‑143 (MQ=255) tatgaCAGCGGATGCACACGCGAGATGCCGATACTGCAGAACATCCTGACGACGATTTATGGGCATCATTATGTTTTGCCGGTCACGATTTGATGAGTCAGTTTGCCGGGAATAAAGAAGATATTGTCGGTATTGGTCTGGGa < 1:427485/143‑1 (MQ=255) aTGCACACGCCAGATGCCGATACTGGAGAATCTCCCGACGACGATTTATGGGCATCATTATGTTTTGCCGGTCACGATTTGATGAGTCAGTTTGCCGGGAATAAAGAAGATATTGTCGGTATTGGTCTGGGATCCATCCGTtg < 1:464070/143‑1 (MQ=255) acacGCCAGATGCCGATACTGCAGAACATCCTGACGACGATTTATGGGCATCATTCTGTTTTGCCGGTCACGATTTGATGAGTCAGTTTGCCGGGAATAAAGAAGATATTGGCGGTATTGGTCTGGGCTCCATCCGTtgctgc > 2:350689/1‑143 (MQ=255) acacGCCAGATGCCGATACTGCAGAACATCCTGACGACGATTTATGGGCATCATTATGTTTTGCCGGTCACGATTTGATGAGTCAGTTTGCCGGGAATAAAGAAGATATTGTCGGTATTGGTCTGGGATCCATCCGTtgctgc > 1:347203/1‑143 (MQ=255) cacGCCAGATGCCGATACTGCAGAACATCCTGACGACGATTTATGGGCATCATTATGTTTTGCCGGTCACGATTTGATGAGTCAGTTTGCCGGGCATAAAGAAGACATTGTCGGTATTGGTCGGGGATCCATCCGTTGCTGcc > 2:256791/1‑143 (MQ=255) acGCCAGATGCCGATACTGCAGAACATCCTGACGACGATTTATGGGCATCATTATGTTTTGCCGGTCACGATTTGATGAGTCAGTTTGCCGGGAATAAAGACGATATGGTCGGTATTGGTCTGGGATCCATCCGTTGCTGCCg > 1:449994/1‑143 (MQ=255) cGCTAGATGCCGATACTGCAGAACATCCTTACGACGATTTATGGGCATCATTATGTTTTGCCGGTCACGATTTGATGAGTCAGTTTGCCGGGAATAAAGAAGATATTGTCGGTATTGGTCTGGGATCCATCCGTTGCTGCCGt < 1:866548/143‑1 (MQ=255) gCCGATGGTTCAGTACATCCTGATGACGATTTATGGTGATCATTATGTTTTGCCGGTCACGATTTGATGAGTCAGTTTGCCGGGAATAAAGAAGATATTGTCGGTATTGGTCTGGGATCCATCCGTTGCTGCCGTGCGTTAtt < 2:741428/143‑1 (MQ=255) ccGATACTGCAGAACATCCTGACGACGATTTATGGGCATCATTATGTTTTGCCGGTCACGCTTTGATGAGTCAGTTTGCCGGGAATAAAGAAGATATTGTCGGTATTGGTCCGGGCTCCATCCGTTGCTGCCGTGCGTTAtcg > 2:1039634/1‑141 (MQ=255) cGATACTGCAGAACATCCTGACGACGATTCATGGGCATCATTATGTTTTGCCGGTCACGATTTGATGAGTCAGTTTGCCGGGAATAAAGAAGATATTGCCGGTACCAGTCTGGGAACCACCCCGTGCAGCCGTCCGTGATGGa > 2:989846/1‑143 (MQ=255) aTACTGCAGAACATCCTGACGACGATTTATGGGCATCATTATGTTTTGCCGGTCACGATTTGATTATTCAGTTTTCTGTGAATAAAGAAGAAATTGTCGGTATTGGTCTGGGATGCATCCGTTGCTGCCGTGCGTTATTGaaa < 1:308966/143‑1 (MQ=255) aTACTGCAGAACATCCTGAAGACGATTTATGGGCATCATTATGTTTTGCGGGTCACGATTTGATGATTCAGTTTGCCGGGAATAAAGAAGATATTGTCGGTATTGGTCTGGGATCCATCCGTTGCTGCCGTGCGTTATTGaaa < 2:232829/143‑1 (MQ=255) gCAGAACATCCTGACGACGATTTATGGGCATCATTATGTTTTGACGGTCGCGATTTCATGGTTCAGGTTGGCGGGAATAAAGAAGATATTGTCGGTGTTGGTCTGGGGTCGATCCGTTGATGGCGTGCGCAATTGaagccgga > 2:153611/1‑137 (MQ=255) cAGATCGTCCGGACTACGATGTATGGGCATGATTATGTTTTGCCGGTCACGATTTGCTGAGTCAGTTTGCCGGGAATAAAGAAGATATGGTCGGTATTGGTCTGGGATCCATCCGTTGCTGCCGTGCGTTATTGAAAGCCGAt < 2:298763/143‑1 (MQ=255) cAGAACATCCTGACGACGATTTATGGGCATCATTATGTTTTGCCGGTCACGATTTGATGAGTCAGTTTGCCGGGAATAAAGAAGATATTGTCGGTATTGGTCTGGGATCCATCCGTTGCTGCCGTGCGTTATTGAAAGCCGAt > 2:43625/1‑143 (MQ=255) cAGAACATCCTGACGACGATTTATGGGCATCATTATGTTTTGCCGGTCACGATTTGATGAGTCAGTTTGCCGGGAATAAAGAAGATATTGTCGGTATTGGTCTGGGATCCATCCGTTGCTGCCGTGCGTTATTGAAAGCCGAt > 2:860820/1‑143 (MQ=255) cAGAACATCCTGACGACGATTTATGGGCATCATTATGTTTTGCCGGTCACGATTTGATGAGTCAGTTTGCCGGGAATAAAGAAGAAAATGTAGCCATCGGTCTGGGATACATCCGTTGATGCCGTGCGATATTGAAAGCCGAt > 2:722293/1‑143 (MQ=255) aaCCTCCTGACGGCGATTTATGGGCCTCATTATGTTTTGCCGGTCACGATTTGATGAGTCAGTTTGCCGGGAATAAAGAAGATATTGTCGGTATTGGTCTGGGATCCATCCGTTGCTGCCGTGCGTTATTGAAAGCCGATGGc < 1:609293/143‑1 (MQ=255) tCCTGACGACGATTTATGGGCATCATTATGTTTTGCCGGTCACGATTTGATGAGTCAGTTTGCCGGGAATAAAGAAGATATTGTCGGTATTGGTCTGGGATCCATCCGTTGCTGCCGTGCGTTATTGAAAGCCGATGGCACGc > 2:375745/1‑143 (MQ=255) cggacgtTTGATGGCCTTCATTATGTTGTGCCGTTGACGATTTGATTAGTCAGTTTGCCGGGAATAAAGCAGATATTGTCGGTATTGGTCTGGGATCCATCCGTTGCTGCCGTGCGTTATTGAAAGCCGATGGCACGCctgct < 2:195961/141‑1 (MQ=255) cgacgaTTTATGGGCATCATTATGTTTTGCCGGTCACGATTTGATGAGTCAGTTTGTCGGGAACAAAGAAGATATTGTCGGTATTGGTCTGGGATCCATCCGTTGCTGCCGTGCGTTATTGAAAGCCGATGGCACGCctgctg < 1:807560/143‑1 (MQ=255) cggtttGTGGGCATGATTAGGTTTTGCGGGTCACGATGTGGTGAGTCAGTTTGCCGGGAATAAGGAAGGTGTTGTCGGTATTGGTCTGGGATCCATCCGTTGCTGCCGTGCGTTAATGAAAGCCGATGGCACGCCTGCTgcgc < 2:276776/140‑1 (MQ=255) gaTTTATGGGCATCATTATGTTTTGCCGGTCACGCTTTGATGAATCAGTTTACCGGGAATAAAGAAGATATTGTCGGTATTGGTCTGGGAACCATCAGTTGCTACCGTGCGTTATAAAAAGCCGATGGCCAGCCtgctgcaca > 2:608001/1‑140 (MQ=255) gaTTTATGGGCATCATTATGTTTTGCCGGTCACGATTTGATGAGTCAGTTTGCCGGGAATAAAGAAGATATTGTCGGTATTGGTCTGGGATCCATCCGTTGCTGCCGTGCGTTATTGAAAGCCGATGGCACGCCTGCTGCGcc > 1:912838/1‑143 (MQ=255) tttATGGGCATCATTATGTTTTGCCGGTCACGATTTGATGAGTCAGTTTGCCGGGAATAAAGAAGATATTGTCGGTATTGGTCTGGGATCCATCCGTTGCTGCCGTGCGTTATTGAAAGCAGATTGCACGCCTGCTGCTCCGt > 1:421188/1‑143 (MQ=255) ttATGGGGATCATTATGTTTTGCCGGTCACGATTTGATGAGTCAGTTTGCCGGGAATAAAGAAGATATTGTCGGTATTGGTCTGGGATCCATCCGTTGCTGCCGTGCGTTATTGAAAGCCGATGGCACGCCTGCTGCGCCGtt < 2:986656/143‑1 (MQ=255) ttATGGGCATCATTATGTTTTGCCGGTCACGATTTGATGAGTCAGTTTACCGGGAATAAAGAAGATATTGTCGGTATTGGTCTGGGatccatc > 2:973640/1‑93 (MQ=255) ttATGGGCATCATTATGTTTTGCCGGTCACGATTTGATGAGTCAGTTTACCGGGAATAAAGAAGATATTGTCGGTATTGGTCTGGGatccatc < 1:973640/93‑1 (MQ=255) ttATGGGCATCATTATGTTTTGCCGGTCACGATTTGATGAGTCAGTTTACCGGGAATAAAGAAGATATTGTCGGTATTGGTCTGGGatccatc < 1:966313/93‑1 (MQ=255) ttATAGCCATGATTACGTAGTGCCGGGCACAACTTGATGAGTCAGTTTGCCGGAAATAAAGAAGATATTCTCGGTATTGGTCTGGGATCCATCCGTTGCTGCCGTGCGTTATTGAAAGCCGATGGCACGCCTGCTGCGCCGtt < 2:284767/143‑1 (MQ=255) ttACGGGCATCATTATGTTTTGCCGGTCACGATTTGATGAGTCAGTTTACCGGGAATAAAGAAGATATTGTCGGTATTGGTCTGGGatccatc > 2:966313/1‑93 (MQ=255) gCATCATTATGTTTTGCCGGTCACGATTTGATGAGTCAGTTTGCCGGGAATAAAGAAGATATTGTCGGTATTGGTCTGGGATCCATCCGTTGCTGCCGTGCGTTATTGAAAGCCGATGGCACGCCTGCTGCGCCGTTGGTTAg > 2:541075/1‑143 (MQ=255) gCATCATTATGTTTTGCCGGTCACGATTTGATGAGTCAGTTTGCCGGGAATAAAGAAGATATTGTCGGTATTGGTCTGGGATCCATCCGTTGCTGCCGTGCGTTATTGAAAGCCGATGGCACGCCTGCTGCGCCGTTGATTAg > 1:426503/1‑143 (MQ=255) catTATGTGTTGCCGGTCACGATTTGCTGAGTCAGTTTGCCGGGAATAAAGAAGATATTGTCGGTATCGGTCTGTGAGCCATCCGTTGCTGCCGTGCGTTATTGAAAGCCGATGGCACGCCTGCTGCGCCGTTGATTAGCTgg < 1:102940/143‑1 (MQ=255) ttATGTTTTGCCGGTCACGATTTGATGAGTCAGTTTGCCGGGAATAAAGAAGATATTGTCGGTATTGGTCTGGGATCCATCCGTTGCTGCCGTGCGTTATTGAAAGCCGATGGCACGCCTGCTGCGCCGTTGATTCGCTGGCa > 1:961486/1‑143 (MQ=255) ttttGCCGGTCACGATTTGATGAGGCAGTTTGCCGGGAATAAAGAAGATATTGTCGGTGTTGGTCTGGGATCCATCCGTTGCTGCCGTGCGTTATTGAAAGCCGATGGCACGCCTGCTGCGCCGTTGATTAGCTGGCAGGATg > 2:424345/1‑143 (MQ=255) tttGCCGGTCACGATTTGATGAGTCAGTTTGCCGGGAATAAAGAAGATATTGTCGGTATTGGTCTGGGATCCATCCGTTGCTGCCGTGCGTTATTGAAAGCCGATGGCACGCCTGCTGCGCCGTTGATTAGGTGGCCGGATGc > 1:681022/1‑143 (MQ=255) tttGCCGGTCACGATTTGATGAGTCAGTTTGCCGGGAATAAAGAAGATATTGTCGGTATTGGTCTGGGATCCATCCGTTGCTGCCGTGCGTTATTGAAAGCCGATGGCACGCCTGCTGCGCCGTTGATTAGCTGGCAGGATGc > 2:636854/1‑143 (MQ=255) gCCGGTCACGATTTGATGAGTCAGTTTGCCGGGAATAAAGAAGATATTGTCGGTATTGGTCTGGGATCCATCCGTTGCTGCCGTGCGTTATTGAAAGCCGATGGCACGCCTGCTGCGCCGTTGATTAGCTGGCAAGAAGCAcg > 2:931083/1‑143 (MQ=255) cctgTCACGATTTGATGAGTCAGTTTGCCGGGAATAAAGAAGATATTGTCGGTATTGGTCTGGGATCCATCCGTTGCTGCCGTGCGTTATTGAAAGCCGATGGCACGCCTGCTGCGCCGTTGATTAGCTGGCAGGATGCAcgc < 2:27221/140‑1 (MQ=255) ccGGTCACGATTTGATGAGTCAGTTTGCCGGGAATAAAGAAGATATTGTCGGTATTGGTCTGGGATCCATCCGTTGCTGCCGTGCGTTATTGAAAGCCGATGGCACGCCTGCTGCGCCGGTGATTAGCTCGCAGGATGCCcgc > 1:71142/1‑143 (MQ=255) ccGGTAACGATTTGATGAGTCAGTTTGCCGGGAATAAAGAAGATATTGTCGGTATTGGTCTGGGATCCATCCGTTGCTGCCGTGCGTTATTGAAAGCCGATGGCACGCCTGCTGCGCCGTTGATTAGCTGGCAGGATGCAcgc < 1:626491/143‑1 (MQ=255) caggTCCCGATTTGATGGGTCAGTGGGCCGGGAAGAAAGAAGATATTGTCGGTATTGGTCTGGGATCCATCCGTTGCTGCCGTGCGTTATTGAAAGCCGATGGCACGCCTGCTGCGCCGTTGATTAGCTGGCAGGATGCAcgc < 1:994035/141‑1 (MQ=255) cGGTCACGATTTGATGAGTCAGTTTGCTGGGAATAAAGAAGATATTGTCGGTATTGGTCTGGGAGCCATCCGTTGCTGCCGTGCGTTATTGAAAGCCGATGGCCCGCGTGCTGCGCCGTTGATTAGCTGCCGGCATGCAcgcg > 2:189438/1‑143 (MQ=255) gTCACGATTTGATGAGTCAGTTTGCCGGGCATAAAGAAGATATTGTCGGTATTGGTCTGGGATCCATCCGTTGCTGCCGTTCGTTATTGAAAGCCGATGGCACGCCTGCTGCGCCGTTGATTAGCTGGCAGGATGCACGCGtt > 2:334163/1‑143 (MQ=255) tttGATGAGTCAGTTTGCCGGGAATAAAGAAGATATTGTCGGTATTGGTCTGGGATCCATCCGTTGCTGCCGTGCGTTATTGAAAGCCGATGGCACGCCTGCTGCGCCGTTGATTAGCTGGCAGGATGCACGCGTTACACGcc > 1:178657/1‑143 (MQ=255) tgatgaGTCAGTTTGCCGGGAATAAAGAAGATATTGTCGGTATTGGTCTGGGATCCATCCGTTGCTGCCGTTCGTTATTGAAAGCCGATGGCACGCCTGCTGCGCCGTTGATTAGCTGGCAGGATGCACGCGTTACACGCCCt < 2:714278/143‑1 (MQ=255) atgaGTCAGGCTGCCGGCAACAAAGAAGATATTGTCGGTATTGTTCTTGGATCCATCCGTTGCTGCCGTCCGTTATTGAAAGCCGATGGCACGCCTGCTGCGCCGTTGATTAGCTGGCAGGATGCACGCGTTACACGCCCTTa < 2:567040/143‑1 (MQ=255) attcggTTTGCCGGGAATACAGATGATATTGGCGGTATTGGTCTGGGATCCATCCGTTGCTGCCGTGCGTTATTGAAAGCCGATGGCACGCCTGCTGCGCCGTTGATTAGCTGGCAGGATGCACGCGTTACACGCCCTTACGa < 1:7924/138‑1 (MQ=255) aGTCAGTTTGCCGGGAATAAAGAAGATATTGTCGGTATTGGTCTGGGATCCATCCGTTGCTGCCGTGCGTTATTGAAAGCCGATGGCACGCCTGCTGCGCCGTTGATTAGCTGGCAGGATGCACGCGTTACACGCCCTTACGa > 1:174597/1‑143 (MQ=255) tCAGTTTGCCGGGAATAAAGAAGATATTGTCGGTATTGGTCTGGGATCCATACGTTGCTGCCGTGCGTTATTGAAAGCCGATGGCACGCCTGCTGCGCCGTTGATTAGCTGGCAGGATGCACGCGTTACACGCCCTTACGAac > 2:180270/1‑143 (MQ=255) cAGTGTGCCGGGAATAGCGAGGAGATTGTCGGTATTGGTCTGGGCGCCATCCGTTGCTTCCGTGCGTTATTGAAAGCTGATGGGACGCATGCTGCGCCGTTGATTAGCTGGCAGGATGCACGCGTTACACGCCCTTACGAaca < 2:271569/143‑1 (MQ=255) | CTGGAAGGTAACGTGGTTTGCGAAGGCAAAGGCTTATTACAGCCGATGCACACGCCAGATGCCGATACTGCAGAACATCCTGACGACGATTTATGGGCATCATTATGTTTTGCCGGTCACGATTTGATGAGTCAGTTTGCCGGGAATAAAGAAGATATTGTCGGTATTGGTCTGGGATCCATCCGTTGCTGCCGTGCGTTATTGAAAGCCGATGGCACGCCTGCTGCGCCGTTGATTAGCTGGCAGGATGCACGCGTTACACGCCCTTACGAACA > NC_000913/2901962‑2902236 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |