Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_000913 | 3,184,219 | A→G | 7.5% | M83T (ATG→ACG) | ribB ← | 3,4‑dihydroxy‑2‑butanone‑4‑phosphate synthase |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_000913 | 3,184,219 | 0 | A | G | 7.5% | 169.3 / 2.5 | 63 | M83T (ATG→ACG) | ribB | 3,4‑dihydroxy‑2‑butanone‑4‑phosphate synthase |
Reads supporting (aligned to +/- strand): ref base A (26/31); new base G (2/3); total (29/34) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.64e-01 |
TGACGGTTTTGCGCCATCGGCAATCGCTGCGCGAACGGTCGTAATACGGTCAGCGGCAGAAACACCGGTAGTCACACCTTCAGCTGCTTCAATGGTCACGGTAAAACCGGTGCCATAGGCGCTGGTGTTATTTTCTACCATCATTGGCAGATCGAGTTGTTTACGGCGATCTTCAGTAATGCACAGGCAAACAATACCGCTACCGTGGCGAATGGTCAGCGCCATCTGCTCAACAGTCATGGTTTCTGCCGGGAAGATCATATCACCTTCGTTTTCACGG > NC_000913/3184080‑3184359 | tGACGGTTTTGCGCCATCGGCAATCGCCGCGCGAACGGTCGTAATACGGTCAGCGGCAGAAACACCGGTAGTCACACCTTCAGCTGCTTCAATGGTCACGGTAAAACCGGTGCCATAGGCGCTGGTGTTATTTTCTACcatca > 1:899343/1‑143 (MQ=255) aCGGTTTTGCGCCCTCGGCAATCGCTGCGCGAACGGTCGTAATACGGTCAGCGGCAGAAACACCGGTAGTCACACCTTCAGCTGCTTCAATGGTCACGGTAAAACCGGTGCCATAGGCGCTGGTGTTATTTTCTACCATCAtt < 1:843084/143‑1 (MQ=255) aCGGCTTTGCGCCCGCGGCAACCGCTGCGCGAACGGTCGTAATACGGTCAGCGGCAGAAACACCGGTAGTCACACCTTCAGCTGCTTCAATGGTCACGGTAAAACCGGTGCCATAGGCGCTGGTGTTATTTTCTACCATCAtt < 1:129995/143‑1 (MQ=255) ggTTTTTCGCCCTCGGCAATCGCGGCGCGGACGGTCGTAATACGGTCAGCGGCAGAAACACCGGTAGTCACACCTTCCGCTGCTTCTATGGTCACGGTAAAACCGGTGCCATAGGCGCTGGTGTTATTTTCTACCATCATTgg < 2:43082/143‑1 (MQ=255) gCAATCGCTGCGCGAACGGTCGTAATACGGTCAGCGGCAGAAACACCGGTAGTCACACCTTCAGCTGCTTAAATGGTCACGGTAAAACCGGTGCCATAGGCGCTGGTGTTCGGTTCTAGCATCATTGGCAGAGCGAGGTGttt > 2:486065/1‑143 (MQ=255) gcgcgGCGCGAACGGTCGTAATACGGTCAGCGGCAGAAACACCGGTAGTCACACCTTCAGCTGCTTCAATGGTCACGGTAAAACCGGTGCCATAGGCGCTGGTGTTATTTTCTACCATCATTGGCAGATCGAGTTGTTTACgg < 1:226168/142‑1 (MQ=255) gCTGCGCGAACGGTCGTAATACGGTCAGCGGCAGAAACACCGGTAGTCACACCTTCAGCTGCTTCAATGGTCACGGTAAAACCGGTGCCATAGGCGCTGGTGTTATTTTCTACCATCATTGGCAGATCGAGTTGTTTACGGCg > 1:738021/1‑143 (MQ=255) gcgAACGGTCGTAATACGGTCAGCGGCAGAAACACCGGTAGTCACACCTTCAGCTGCTTCAATGGTCACGGTAAAACCGGTGCCATAGGCGCTGGTGTTATTTTCTACCGTCATTGGCAGATCGAGTTGTTTACGGCGATCtt > 1:591886/1‑143 (MQ=255) gcgAACGGTCGTAATACGGTCAGCGGCAGAAACACCGGTAGTCACACCTTCAGCTGCTTCAATGGTCACGGTAAAACCGGTGCCATAGGCGCTGGTGTTATTTTCTACCGTCATTGGCAGATCGAGTTGTTTACGGCGATCtt > 1:4151/1‑143 (MQ=255) gAACGGTCGTAATACGGTCAGTGGCATAAACACCGGTAGTCACACCTTAAGGTGCTACAAGGGGCAGGGGAAAACCGAGGCGAGAGGCGCTGGGGGGAGGGTCGACCATCATGGGAAGAGCGAGTTGTGTACGGCGATCTGCa < 1:1080680/143‑1 (MQ=255) gAACGGTCGTAATACGGTCAGCGGCAGAAACACCGGTAGTCACACCTTCAGCTGCTTCAATGGTCACGGTAAAACCGGTGCCATAGGCGCTGGTGTTATTTTCTACCATCATTGGCAGATCGAGTTGTTTACGGCGATCTTCa < 1:991417/143‑1 (MQ=255) cGGTCGTAATACCGTCAGCGGCAGAAACCCCGGTAGTCACACCTTCAGCTGCTTCAATGGTCACGGTAAAACCGGTGCCATAGGCGCTGGTGTTATTTTCTACCATCATTGGCAGATCGAGTTGTTTACGGCGATCTTCAGTa < 1:249786/143‑1 (MQ=255) gTCGTAATACGGTCAGCGGCAGAAACACCGGTAGTCACACCTTCAGCTGCTTCAATGGTCACGGTAAAACCGGTGCCATAGGCGCTGGTGTTATTTTCTACCATCATTGGCAGATCGAGTTGTTTACGGCGATCTTCaataat > 1:573311/1‑143 (MQ=255) aTACGGTCAGCGGCAGAAACACCGGTAGTCACACCTTCAGCTGCTTCAATGGTCACGGTAAAACCGGTGCCATAGGCGCTGGTGTTATTTTCTACCATCATTGGCAGATCGAGTTGTTTACGGCGATCTTCAGTAATGCACAg < 2:37015/143‑1 (MQ=255) aTACGGTCAGCGGCAGAAACACCGGTAGTCACACCTTCAGCTGCTTCAATGGTCACGGTAAAACCGGTGCCATAGGCGCTGGTGTTATTTTCTACCATCATTGGCAGATCGAGTTGTTTACGGCGATCTTCAGTAATGCACAg < 1:1044488/143‑1 (MQ=255) tACGGTCAGCGGCAGAAACACCGGTAGGCACACCTTCAGCTGCTTCAATGGTCCCGGTAAAACCGGTGCCATAGGCGCTGGTGTTATTTTCTACCATCATTGGCAGATCGAGTTGTTTACGGCGATCTTCAGTAATGCACAgg < 1:10674/143‑1 (MQ=255) ggTCAGCGGCAGAAACACCGGTAGTCACACCTTCAGCTGCTTCAATGGTCACGGTAAAACCGGTGCCATAGGCGCTGGTGTTATTTTCTACCATCATTGGCAGATCGAGTTGTTTACGGCGACCTTCAGTAATGCACAGGCaa > 2:1088506/1‑143 (MQ=255) gTCAGCGGCAGAAACACCGGTAGTCACACCTTGAGCTGCTTCAATGGTCACGGTAAAACCGGTGCCATAGGCGCTGGTGTTATTTTCTACCATCATTGGCAGATCGAGTTGTTCACGGCGATCTTCAGTAATGCACAGGCaaa > 2:581157/1‑143 (MQ=255) gTCAGCGGCAGAAACACCGGTAGTCACACCTTCAGCTGCTTCAATGGTCACGGTAAAACCGGTGCCATAGGCGCTGGTGTTATTTTCTACCATCATTGGCAGATCGAGTTGTTTACGGCGATCTTCAGTAATGCACAGGCaaa < 1:767644/143‑1 (MQ=255) cGGCAGAAACACCGGTAGTCACACCTTCAGCTGCTTCAATGCTCACGGTAAAACCGGTGCCATAGGCGCTGGTGTTATTTTCTACCATCATTGGCAGATCGAGTTGTTTACGGCGATCTTCAGTAATGCACAGGCAAACAATa > 1:868804/1‑143 (MQ=255) aaaCACCGGTAGTCACACCTTCAGCTGCTTCAATGGTCACGGTAAAACCGGTGCCATAGGCGCTGGTGTTATTTTCTACCATCATTGGCAGATCGAGTTGTTTACGGCGATCTTCAGTAATGCACAGGCAAACAATACCGCTa < 1:530916/143‑1 (MQ=255) acacCGGTAGTCACACCTTCAGCTGCTTCAATGGTCACGGTAAAACCGGTGCCATAGGCGCTGGTGTTATTTTCTACCATCATTGGCAGATCGAGTTGTTTACGGCGATCTTCAGTAATGCACAGGCGAACAATCCCGCTAcc > 2:356392/1‑143 (MQ=255) acCGGTAGTCACACCTTCAGCTGCTTCAATGGTCACGGTAAAACCGGTGCCATAGGCGCTGGTGTTATTTTCTACCATCATTGGCAGATCGCGTTGTTTACGGCGATCTTCAGTAATGCACAGGCAAACAATACCGCTACAGt > 1:366824/1‑143 (MQ=255) ccGGTAGTCACACCTTCAGCTGCTTCAATGGTCACGGTAAAACCGGTGCCATAGGCGCTGGTGTTATTTTCTACCATCATTGGCAGATCGAGTTGTTTACGGCGATCTTCAGTAATGCACAGGCAAACAATACCGCTACCGTg < 1:877428/143‑1 (MQ=255) cGGTAGTCACACCTTCAGCTGCTTCAATGGTCACGGTAAAACCGGTGCCATAGGCGCTGGTGTTATTTTCTACCATCATTGGCAGATCGAGTTGTTTACGGCGATCTTCAGTAATGCACAGGCAAACAATACCGCTACCGTgg < 2:726200/143‑1 (MQ=255) ggTAGTCACACCTTCAGCTGCTTCAATGGTCACGGTAAAACCGGTGCCATAGGCGCTGGTGTTATTTTCTACCATCATTGGCAGATCGAGTTGTTTACGGCGATCTTCAGTAATGCACAGGCAAACAATACCGCTACCGTGGc < 2:738021/143‑1 (MQ=255) tCACACCTTCAGCTGCTTCAATGGTCACGGTAAAACCGGTGCCATAGGCGCTGGTGTTATTTTCTACCATCATTGGCAGATCGAGTTGTTTACGGCGATCTTCAGTAATGCACAGGCAAACAATACCGCTACCGTGGCGAATg < 1:932922/143‑1 (MQ=255) cacaCCTTCAGCTGCTTCAATGGTCACGGTAAAACCGGTGCCCTAGGCGCTGGTGTTATTTTCTACCATCATTGGCAGATCGAGTTGTTTACGGCGATCTTAACGTAGACAGCGCCAGACCATACCGCTACCGTGGCGAATgg > 2:778519/1‑143 (MQ=255) acacCTTCAGCTGCTTCAATGGTCACGGTAAAACCGGTGCCATAGGCGCTGGTGTTATTTTCTACCATCATTGGCAGAAGGATTAACCATCGTCGTTCTTCAGTAATGCACAGGCAAACAATACCGCTACCGTGGCGAATGGt > 1:253478/1‑143 (MQ=255) acacCTTCAGCTGATTCAATGGTCACGGTAAAACCGGTGCCATAGGCGCTGGTGTTATTTTCTACCATCATTGGCAGATCGAGTTGTTTACGGCGATCTTCAGTAATGCACAGGCAAACAATACCGCTACCGTGGCGACTGGt > 2:1105127/1‑143 (MQ=255) cacCTTCAGCTGCTTCAATGGTCACGGTAAAACCGGTGCCATAGGCGCTGGTGTTATTTTCTACCATCATTGGCAGATCGAGTTGTTTACGGCGATCTTCAGTAATGCACAGGCAAACAATACCGCTACCGTGGCGAATGGTc > 1:763084/1‑143 (MQ=255) tccgctgctTCAATGGTCACGATAAAACCGGTGCCATAGGCGCTGGTGTTATTTTCTCCCATCATTGGCAGATCGAGTTGTTTACGGCGATCTTCAGTAATGCACAGGCAAACAATACCGCTACCGTGGCGAATGGTCAgcgc < 2:994855/140‑1 (MQ=255) ctgctTCAATGGTCACGGTAAAACCGGTGCCATAGGCGCTGGTGTTATTTTCTACCATCATTGGCAGATCGAGTTGTTTACGGCGATCTTCAGTAATGCCCAGGCAAACAATACCGCTACCGTGGCGAATGGTCAGCGCCATc > 1:843432/1‑143 (MQ=255) gctTCAATGGTCACGGTAAAACCGGTGCCATAGGCGCTGGTGTGATTTTCTACCATCATTGGCAGATCGAGTTGTTTACGGCGATCTTCAGTAATGCACAGGCAAACAATACCGCTACCGTGGCGAATGGTCAGCGCCATCTg < 1:568737/143‑1 (MQ=255) ttCAATGGTCACGGTAAAACCGGTGCCATAGGCGCTGGTGTTATTTTCTACCCTCCTTGGCAGATCGAGTTCTTTACGGCGATCTTCAGTAATGCACAAGCAAACAATACCGCTTCCGTGGCCAATCCTCAGCGCCacccgcc > 1:1027745/1‑137 (MQ=255) tCAATGGTCACGGTAAAACCGGTGCCATAGGCGCTGGTGTTATTTTCTACAATAATTGGCAGATCGAGTTGTTTACGGCGATCTTCAGTACTGCCACGGCAAGCAATACCGGTACAGTGGCGATTGGTCAGCGCCATCTGCTc > 1:410399/1‑143 (MQ=255) tGGTCACGGTAACACCGGTGCCATAGGCGCTGGTGTCATTTTCTACCATCATTGGCAGATCGAGTTGTTTACGGCGATCTTCAGTAATGCACAGGCAAACAATACCGCTACCGTGGCGAATGGTCAGCGCCATCTGCTCAACa < 2:560575/143‑1 (MQ=255) aCGGTGAAACCGGTGCCATAGGCGCTGGTGTTATTTTCTACCATCATTGGCAGATCGAGTTGTTTACGGCGATCTTCAGTAATGCACAGGCAAACAATACCGCTACCGTGGCGCAGGGTCAGCGCCATCTGCTCAACAGTCAt > 1:124546/1‑143 (MQ=255) aCGGTAAAACCGGTGCCATAGGCGCTGGTGTTATTTTCTACCATCATTGGCAGATCGAGTTGTTTACGGCGATCTTCAGTAATGCACAGGCAAACAATACCGCTACCGTGGCGACTGGTCAGCGCCATCTGCTCAACAGTCAt > 2:860661/1‑143 (MQ=255) aCGGTAAAACCGGTGCCATAGGCGCTGGTGTTATTTTCTACCATCATTGGCAGATCGAGTTGTTTACGGCGATCTTCAGTAATGCACAGGCAAACAATACCGCTACCGTGGCGAATGGTCAGCGCCATCTGCTCAACAGTCAt < 1:793561/143‑1 (MQ=255) gTAAAACCGGTGCCATAGGCGCTGGTGTTATTTTCTACCATCATTGGCAGATCGAGTTGTTTACGGCGATCTTCAGTAATGCACAGGCAAACAATACCGCTACCGTGGCGAATGGTCAGCGCCATCTGCTCAACAGTCATGGt > 1:1004910/1‑143 (MQ=255) aaaaACGGTGCCATAGGCGCTGGTGTTATTTTCTACCATCATTGGCAGATCGAGTTGTTTACGGCGATCTTCAGTAATGCACAGGCAAACAATACCGCTACCGTGGCGAATGGTCAGCGCCATCTGCTCAACAGTCATGGttt < 1:738453/143‑1 (MQ=255) ggTGCCATAGGCGCGGGTGGTATTTGCTACCGTCAGTGGCAGATCGAGTTGTTTACGGCGATCTTCAGGAATGCACAGGCAAACAAGACCGCGACCGTGGCGAATGGTCAGCGCCATCTGCTCAACAGTCATGGTTTCTGCCg < 2:811923/143‑1 (MQ=255) gTGCCGTAGGCGCTGGTGTTATTTTCTACCATCATTGGCAGATCGAGTTGTTTACGGCGATCTTCAGTAATGCACAGGCAAACAATACCGCTACCGTGGCGAATGGTCAGCGCCATCTGCTCAACAGTCATGGTTTCTGCCgg < 1:52951/143‑1 (MQ=255) gTGCCATAGGCGCTGGTGTTATTTTCTACCATCATTGGCAGATCGAGTTGTTTACGGCGATCTTCAGTAATGCACAGGCAAACGATACTGCTACCCTGGCAAATCGTCAGCGCCATCTGCTCAACAGTCATGGGGTCTGCCgg > 1:804308/1‑143 (MQ=255) ccATAGGCGCTGGTGTTATTTTCTACCATCATTGGCAGATCGAGTTGTTTACGGCGATCTTCAGTAATGCACAGGCAAACAATACCGCTACCGTGGCGAATGGTCAGCGCCATCTGCTCAACAGTCATGGTTTCTGCCGGGaa < 1:164406/143‑1 (MQ=255) aGGCGCTGGTGTTATTTTCTACCGTCATTGGCAGATCGAGTTGTTTACGGCGATCTTCAGTAATGCACAGGCAAACAATACCGCTACCGTGGCGAATGGTCAGCGCCATCTGCTCAACAGTCATGGTTTCTGCCGGGAAGATc < 2:591886/143‑1 (MQ=255) aGGCGCTGGTGTTATTTTCTACCGTCATTGGCAGATCGAGTTGTTTACGGCGATCTTCAGTAATGCACAGGCAAACAATACCGCTACCGTGGCGAATGGTCAGCGCCATCTGCTCAACAGTCATGGTTTCTGCCGGGAAGATc < 2:4151/143‑1 (MQ=255) ggCGCTGGTGTTATTTTCTACCATCATTGGCAGATCGAGTTGTTTACGGCGATCTTCAGTAATGCACCGGCAAACAATACCGCTACCGTGGCGAATGGTCAGCGCCATCTGCGCAACAGTCGTGGTTTCTGCCGGGAAGATCa > 1:337123/1‑143 (MQ=255) gcgcTGGTGTTATTTTCTACCATCATTGGCAGATCGAGTTGTTTACGGCGATCTTCAGTAATGCACAGGCAAACAATACCGCTACCGTGGCGAATGGTCAGCGCCATCTGCTCAACAGTCATGGTTTCTGCCGGGAAGATCat > 1:255788/1‑143 (MQ=255) gcgcTGGTGTTATTTTCTACCATCATTGGCAGATCGAGTTGTTTACGGCGATCTTCAGTAATGCACAGGCAAACAATACCGCTACCGTGGCGAATGGTCAGCGCCATCTGCTCAACAGTCATGGTTTCTGCCGGGAAGATCat < 1:314159/143‑1 (MQ=255) gcgcTGGTGTTATTTTCTACCATCATTGGCAGACCGAGTTGTTTACGGCGATCTTCAGTAATGCACAGGCAAACAATACCGCTACCGTGGCGAATGGTCAGCGCCATCTGCTCACCAGTCATGGTTTCTGCCGGGAAGATCat > 2:645927/1‑143 (MQ=255) cTGGGGTTATTTTCTACCATCTTTGGCAGGTCGAGGTGTTCACGGCGATGTTCGGTAACGCACAGGCAAACAATACCGCTACCGTGGCGAATGGTCAGCGCCATCTGCTCAACAGTCATGGTTTCTGCCGGGAAGATCATATc < 2:957311/143‑1 (MQ=255) gtTATTTTCCACCATCATGGGCAGATCGAGTTGTTTACGGCGATCTTCAGTAATGCACAGGCAAACAATACCGCTACCGTGGCGAATGGTCAGCGCCATCTGCTCAACAGTCATGGTTTCTGCCGGGAAGATCATATCACCtt < 1:108482/143‑1 (MQ=255) cttttCTACCATCATTGGCAGATCGAGTTGTTTACGGCGATCTTCAGTAATGCACAGGCAAACAATACCGCTACCGTGGCGAATGGTCAGCGCCATCTGCTCAACAGTCATGGTTTCTGCCGGGAAGATCATATCACCTTCGt < 2:364450/142‑1 (MQ=255) aTTTTCTACCATCATTGGCAGATCGAGTTGTTTACGGCGATCTTCAGTAATGCACAGGCAAACAATACCGCTACCGTGGCGAATGGTCAGCGCCATCTGCTCAACAGTCATGGTTTCTGCCGGGAAGATCATATCACCTTCGt > 1:1059432/1‑143 (MQ=255) aTTTTCCACCATCATTGCCAGATCGAGTTGTTTACGGCGATCGTCAGTAATGCACAGGCAAACAATACCGCTACCGTGGCGAATGGTCAGCGCCATCTGCTCAACAGTCATGGTTTCTGCCGGGAAGATCATATCACCTTCGt < 1:321217/143‑1 (MQ=255) tttCTACCATCATTGGCAGATCGAGTTGTTTACGGCGATCTTCAGTAATGCACAGGCAAACAATACCg > 2:43558/1‑68 (MQ=255) tttCTACCATCATTGGCAGATCGAGTTGTTTACGGCGATCTTCAGTAATGCACAGGCAAACAATACCg < 1:43558/68‑1 (MQ=255) ttCTACCATCATTGGCAGATCGAGTTGTTTACGGCGATCTTCAGTAATGCACAGGCAAACAATACCGCTACCGTGGCGAATGGTCAGCGCCATCTGCTCAACCGTCATGGTTTCTGCCGGGCAGATCATATCCCCCTCGtttt > 1:27199/1‑143 (MQ=255) tCTACCATCATTGGCAGATCGAGTTGTTTACGGCGATCTTCAGTAATGCACAGGCAAACAATACCGCTACCGTGGCGAATGGTCAGCGCCATCTGCTCAACCGTCATCCCCGCGGCCGGGAAGCTCATATCACCTTCGTTTTc > 1:1041538/1‑143 (MQ=255) tCTACCATCAGTGGCAGATCGAGTTGCTTACGGCGATCTTCAGTAATGCACAGGCAAACAATACCGCTACCGTGGCGAATGGTCAGCGCCATCTGCTCAACAGTCATGGTTTCTGCCGGGAAGATCATATCACCTTCGTTTTc < 1:500947/143‑1 (MQ=255) tACCATCATGGGCAGATCGAGGTGTTCACGGCGAGCTTCAGTAATGCACAGGCAAACAATACCGCTACCGTGGCGAATGGTCAGCGCCATCTGCTCAACAGTCATGGTTTCTGCCGGGAAGATCATATCACCTTCGTTTTCAc < 1:1017832/143‑1 (MQ=255) ccATCATTGGCAGATCGAGTTGTTTACGGCGATCTTCAGTAATGCACAGGCAAACAATACCGCTACCGTGGCGAATGGTCAGCGCCATCTGCTCAACAGTCATGGTTTCTGCCGGGAAGATCATATCACCTTCGTTTTCACgg > 1:804028/1‑143 (MQ=255) | TGACGGTTTTGCGCCATCGGCAATCGCTGCGCGAACGGTCGTAATACGGTCAGCGGCAGAAACACCGGTAGTCACACCTTCAGCTGCTTCAATGGTCACGGTAAAACCGGTGCCATAGGCGCTGGTGTTATTTTCTACCATCATTGGCAGATCGAGTTGTTTACGGCGATCTTCAGTAATGCACAGGCAAACAATACCGCTACCGTGGCGAATGGTCAGCGCCATCTGCTCAACAGTCATGGTTTCTGCCGGGAAGATCATATCACCTTCGTTTTCACGG > NC_000913/3184080‑3184359 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |