Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_000913 3,309,012 A→G 8.5% intergenic (‑88/+21) nlpI ← / ← pnp lipoprotein NlpI/polynucleotide phosphorylase

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,309,0120AG 8.5% 140.2 / 4.4 60intergenic (‑88/+21)nlpI/pnplipoprotein NlpI/polynucleotide phosphorylase
Reads supporting (aligned to +/- strand):  ref base A (23/30);  new base G (2/3);  total (27/33)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.23e-01

TGCAAGCGTAAGTGCTGTCGCAACGAAACACCAGCGCAAAAAAGGCTTCATTTCCCACTCCCGAAGACCACGGTTGAATGAACGTCCTGTTCCCGGTTGCTAACAAGGCGTCCTGCCCGGTTAAAAGCCCCCCGCCGCAGCGGAGGGCAAATGGCAACCTTACTCGCCCTGTTCAGCAGCCGGAGCTTCCGGTGCTGCAGCAGGTTGAGACTGCTCAGTCGCTTCTTTAATGCTCAGACGGATACGGCCCTGGCGATCAACTTCCAGAACTTTCACCGG  >  NC_000913/3308874‑3309152
                                                                                                                                          |                                                                                                                                            
tGCAAGCGTAAGTGCTGTCGCAACGAAACACCAGCGCAAAAAAGGCTTCATTTCCCACTCCCGAAGACCACGGTTGAATGAACGTCCTGTTCCCGGTTGCTAACACGGCGTCCTGCCCGGTTAAAAGCCCCCCGCCGCAGCgg                                                                                                                                          >  2:89890/1‑143 (MQ=255)
 gCAAGCGTAAGTGCTGTCGCAACGAAACACCAGCGCAAAAAAGGCTTCATTTCCCACTCCCGAAGACCACGGTTGAATGAACGTCCTGTTCCCGGTTGCTAACAAGGCGTCCTGCCCGGTTAAAAGCCCCCCGCCGCAGCGGa                                                                                                                                         <  1:813050/143‑1 (MQ=255)
 gCAAGCGTAAGTGCTGTCGCAACGAAACACCAGCGCAAAAAAGGCTTCATTTCCCACTCCCGAAGACCACGGTTGAATGAACGTCCTGTTCCCGGTTGCTAACAAGGCGTCCTGCCCGGTTAAAAGCCCCCCGCCGCAGCGGa                                                                                                                                         <  1:549209/143‑1 (MQ=255)
    aGCGTAAGTGCTGTCGCAACGAAACACCAGCGCAAAAAAGGCTTCATTTCCCACTCCCGAAGACCACGGTTGAATGAACGTCCTGTTCCCGGTTGCTAACAAGGCGTCCTGCCCGGTTAAAAGCCCTCCGCTGCGGCgggggg                                                                                                                                      <  2:565162/143‑1 (MQ=255)
    aGCGTAAGTGCTGTCGCAACGAAACACCAGCGCAAAAAAGGCTTCATTTCCCACTCCCGAAGACCACGGTTGAATGAACGTCCTGTTCCCGGTTGCTAACAAGGCGTCCTGCCCGGTTAAAAGCCCTCCGCTGCGGCgggggg                                                                                                                                      <  2:585035/143‑1 (MQ=255)
     gCGTAAGTGCTGTCGCAACGAAACACCAGCGCAAAAAAGGCTTCATTTCCCTCTCCCGATGACCACGGTTGAATGAACGTCCTGTTCCCGGTTGCTAACAAGGCGTCCTGCCCGGTTAAAAGCCCTCCGCTGCGGCGGGGGGc                                                                                                                                     <  2:88979/143‑1 (MQ=255)
     gCGTAAGTGCTGTCGCAACGAAACACCAGCGCAAAAAAGGCTTCATTTCCCACTCCCGAAGACCACGGTTGAATGAACGTCCTGTTCCCGGTTGCTAACAAGGCGTCCTGCCCGGTTAAAAGCCCCCCGCCGCAGCGGAGGGc                                                                                                                                     >  1:1050841/1‑143 (MQ=255)
        tacgTGCTGTCGCAACGAAACACCAGCGCAAAAAAGGCTTCATTTCCCACTCCCGAAGACCACGGTTGAATGAACGTCCTGTTCCCGGTTGCTAACAAGGCGTCCTGCCCGGTTAAAAGCCCCCCGCCGCAGCGGAGGGCaaa                                                                                                                                  <  2:635690/140‑1 (MQ=255)
        tAAGTGCTGTCGCAACGAAAAACAAGCGAAAAAAAGGCTTCATTTCCCACTCCCGAAGACCACGGTTGAATGAACGTCCTGTTCCCGGTTGCTAACAAGGCGTCCTGCCCGGTTAAAAGCCCCCCGCCGCAGCGGAGGGCaaa                                                                                                                                  <  2:294894/143‑1 (MQ=255)
                 tCGCAACGAAACACCAGCGCAAAAAAGGCTTCATTTCCCACTCCCGACGACCACGGTTGAATGAACGTCCTGTTCCCGGTTGCTAACAAGGCGTCCTGCCCGGTTAAAGGCCCCCCGCCGCAGCGGCGGGCACATGGCCACCt                                                                                                                         >  2:973558/1‑143 (MQ=255)
                 tCGCAACGAAACACCAGCGCAAAAAAGGCTTCATTTCCCACTACCGAAGACCACGGTTGAATGAACGTCCTGTTCCCGGTTGCTAACAAGGCGTCCTGCCCGGTTAAAAGCCCCCCGCCGCAGCGGAGGGCAAATGGCAACCt                                                                                                                         >  2:901565/1‑143 (MQ=255)
                  cGCAACGAAACACCAGCGCAAAAAAGGCTTCATTTCCCACTCCCGAAGACCACGGTTGAATGAACGTCCTGTTCCCGGTTGCTAACAAGGCGTCCTGCCCGGTTAAAAGCCCCCCGCCGCAGCGGAGGGCAAATGACAGccgt                                                                                                                        >  1:215983/1‑141 (MQ=255)
                     aaCGAAACACCAGCGCAAAAAAGGCTTCATTTCCCACTCCCGAAGACCACGGTTGAATGAACGTCCTGTTCCCGGTTGCTAACAAGGCGTCCTGCCCGGTTAAACGCACCCCGCCGCCGCGGATGGCACATGCTAACCTTAcc                                                                                                                     >  2:438245/1‑142 (MQ=255)
                         aaaCCCCAGCGCAGAACAGTCTTCATTTCTCCCTCCCGAAGACCACGGTTGAATGAACGTCCTGTTCCCGGTTGCTAACAAGGCGTCCTGCCCGGTTAAAAGCCCCCCGCCGCAGCGGAGGGCAAATGGCAACCTTACTCGcc                                                                                                                 <  2:828773/143‑1 (MQ=255)
                           ccacCAGCGCACCACAGGCGTCATTTCCCGCTCCCGAAGCCCACGGTTGAATGAAGGTCCTGTTCCCGGTTGTTAACCAGGCGTCCTGCCCGGTTAAAAGCCCCCCGCCGCAGCGGAGGGCAAATGGCAACCTTACTCGCCCt                                                                                                               <  2:1008411/142‑1 (MQ=255)
                             acgaGCGCAAAAAAGGCTTCATGTCACACTCCCGAGTACCACGGTTCAATGAACGTCCTGTTGCCGGTGGCTAACGAGACGGACTGACCGGGTAAAAGCCCCCGGCCGGAGCGGAGGGCACATGGCACCCTTAACCGCCCAGt                                                                                                             >  2:136156/4‑143 (MQ=255)
                              ccAGCGCAAAAAAGGCTTCATTTCCCACTCCCGAAGACCACGGTTGAATGAACGTCCTGTTCCCGGTTGCTAAAAAGGCGTCCTGCCCGGGTAAAAGCCCCCCGCCGCAGCGGAGGGCAAGGGGCAACCTTACTGGCCCTGtt                                                                                                            >  1:23525/1‑143 (MQ=255)
                                  cgcAAAAAAGGCTTCATTTCCCACTCCCGAAGACCACGGTTGAATGAACGTCCTGTTCCCGGTTGCTAACAAGGCGTCCTGCCCGGTTAAAAGCCCCCCGCCGCAGCGGAGGGCAAATGGCAACCTTACTCGCCCTGTTcagc                                                                                                        >  1:206053/1‑143 (MQ=255)
                                    cAAAAAAGGCTTCATTTCCCACTCCCGAAGACCACGGTTGAATGAACGTCCTGTTCCCGGTTGCTAACAAGGCGTCCTGCCCGGTTAAAAGCCCCCCGCCGCAGCGGAGGGCAAATGGCAACCTTACTCGCCCTGTTcagcag                                                                                                      >  2:766916/1‑143 (MQ=255)
                                     aaaaaaGGCTTCATGTCCCACTCCCGAAGACCACGGTTGAATGAACGTCCTGTTCCCGGTTGCTAACAAGGCGTCCTGCCCGGTTAAAAGCCCCCCGCCGCAGCGGAGGGCAAATGGCAACCTTACTCGCCCTGTTCagcagc                                                                                                     <  2:1006876/143‑1 (MQ=255)
                                      agagtggCTTCCTTTCCCCCTCCCGAAGACCACGGTGGCATGAACGTCCTGTGCCCGGTTGCTAACAAGGCGCCCTGCCCGGTTAAAAGCCCCCCGCCGCAGCGGAGGGCAAGTGGCAACCTTACTCGCCCTGTTCAGCAGcc                                                                                                    <  2:378786/138‑1 (MQ=255)
                                      aaaaaTGCTTCATTTCCCACTCCCGAAGACCACGGTTGAATGAACGTCCTGTTCCCGGTTGCTAACAAGGCGTCCTGCCCGGTTAAAAGCCCCCCGCCGCAGCGGAGGGCAAATGGCAACCTTACTCGCCCTGTTCAGCAGcc                                                                                                    <  2:979517/143‑1 (MQ=255)
                                       aaaaGGCTTCATTTCCCCCTCCCGAAGACCACGGTTGAATGAACGTCCTGTTCCCGGTTGCTAACAAGGCGTCCTGCCCGGTTAAAAGCCCCCCGCCGCAGCGGAGGGCAAATGGCAACCTTACTCGCCCTGTTCAGCAGCCg                                                                                                   <  1:1038129/143‑1 (MQ=255)
                                        aaaGGCTTCATTTCCCACTCCCGAAGACCACGGTTGAATGAACGTCCTGTTCCCGGTTGCTAACAAGGCGTCCTGCCCGGTTAAAAGCCCCCCGCCGCAGCGGAGGGCAAATGGCAACCTTACTCGCCCTGTTCAGCAGCCgg                                                                                                  <  1:436346/143‑1 (MQ=255)
                                               tCATTTCCCACTCCCGAAGACCACGGTTGAATGAACGTCCTGTTCCCGGTTGCTAACAAGGCGTCCTGCCCGGTTCAAAGCCCCCCGCCGCAGCGGAGGGCCAGTGGCCACCTTACTCGCCCGGTTCAGCAGCCGGAGccccc                                                                                           >  1:295679/1‑139 (MQ=255)
                                                   ttCCCACTCCCGAAGACCACGGTTGAATGAACGTCCTGTTCCCGGTTGCTAACAAGGCGTCCTGCCCGGTTAAAAGCCCCCCGCCGCAGCGGAGGGCAAATGGCAACCTTACTCGCCCTGTTCAGCAGCCGGAGCTTCCGGtg                                                                                       <  2:1085534/143‑1 (MQ=255)
                                                    tCCCACTCCCGAAGACCACGGTTGAATGAACGTCCTGTTCCCGGTTGCTAACAAGGCGTCCTGCCCGGTTAAAAGCCCCCCGCCGCAGCGGAGGGCAAATGGCAACCTTACTCGCCCTGTTCAGCAGCCGGAGCTTCCGGtgc                                                                                      <  2:841580/143‑1 (MQ=255)
                                                      ccACTCCCGAAGACCACGGTTGAATGAACGTCCTGTTCCCGGTTGCTAACAAGGCGTCCTGCCCGGTTAAAAGCCCCCCGCCGCAGCGGAGGGCAAATGGCAACCTTACTCGCCCTGTTCAGCAGCCGGCGCTTCCGGtgccg                                                                                    >  1:679557/1‑141 (MQ=255)
                                                       cACTCCCGAAGACCACGGTTGAATGAACGTCCTGTTCCCGGTTGCTAACAAGGCGTCCTGCCCGGTTAAAAGCCCCCCGCCGCAGCGGAGGGCAAATGGCAACCTTACCCGCCCTGTTCAGCAGCCGGAGCCTCCGGtgctgc                                                                                   >  2:959313/1‑143 (MQ=255)
                                                        aCTCCCGAAGACCACGGTTGAATGAACGTCCTGTTCCCGGTTGCTAACAAGGCGTCCTGCCCGGTTAAAAACCCCCCGCCGCAGCGGAGGGCAAATGGCAACCTTACTCGCCCTGTTCAGCAGCCGGAGCTTCCGGTGCTgca                                                                                  >  2:1056939/1‑143 (MQ=255)
                                                            ccGAACACCACAGCAGAATGAACGACCTGTCTCCGGTTGCAAACAAGGAGTCCAGCCCGGTTAAAAGCCCCCCGCCGCAGCGGAGGGCAAATGGCAACCTTACTCGCCCTGTTCAGCAGCCGGAGCTTCCGGTGCTGcagcag                                                                              <  1:590323/143‑1 (MQ=255)
                                                             cGAAGACCACGGTTCAATGCACCTCCTGTTCCCGGTGGCTAACAAGGCGTCCTGCCCGGTTAAAAGCCCCCCGCCGCAGCGGAGGGCAAATGGCAACCTTACTCGCCCTGTTCAGCAGCCGGAGCTTCCGGTGCTGCAGCAgg                                                                             <  2:927956/143‑1 (MQ=255)
                                                                cctctaCGGCTGCATGAACGTCGCGTTCCCGGTTGCTAACAAGGCGTCCTGCCGGGTTAAAGGCCCCCCGCCGCAGCGGAGGGCAAATGGCATCCTTACTCGCTCTCTTCAGCAGCCGGAGCTTCCGGTGCTGCAGCAGGTTg                                                                          <  2:216647/138‑1 (MQ=255)
                                                                       ggTTGAATGAACGTCCTGTTCCCGGTTGCTAACAAGGCGTCCTGCCCGGTTAAAAGCCCCCCGCCGCAGCGGAGGGCAAATGGCAACCTTACTCGCCCTGTTCAGCAGCCGGAGCTTCCGGTGCTGCAGCAGGTTGAGACTGc                                                                   >  1:116598/1‑143 (MQ=255)
                                                                              tgaaCGTCCTGTTCCCGGTTGCTAACAAGGCGTCCTGCCCGGTTAAAAGCCCCCCGCCGCAGCGGAGGGCAAATGGCAACCTTACTCGCCCTGTTCAGCAGCCGGAGCTTCCGGTGCTGCAGCAGGTTGAGACTGCTCAGCCg                                                            >  1:771705/1‑143 (MQ=255)
                                                                                 aCGTCCTGTTCCCGGTTGCTAACAAGGCGTCCTGCCCGGTTAAAAGCCCCCCGCCGCCGCGGAGGGCACATGGCGACCTTACTCGCCCTGTTCACCAGCAGGAGCTTCGGGTGCAGCAGCAGGCTGAGACTGCACAGTCGcgt                                                         >  2:595456/1‑141 (MQ=255)
                                                                                       tgtcctcGGTTGCTCACGAGGCGTCCTGCCCGGTTAACAGCCCCCCGNCGCAGCGGAGGGCAAATGGCACCCTTACTCGCCCTGTTCAGCAGCCGGAGCTTCCGGTGCTGCAGCAGGTTGAGACTGCTCAGTCGCTTCTTTaa                                                   <  2:215983/137‑1 (MQ=255)
                                                                                        gtgcccGGTTGCTAACAAGGCGTCCTGCCCGGTTAAAAGCCCCCCGCCGCAGCGGAGGGCAAATGGCAACCTTACTCGCCCTGTTCAGCAGCCGGACCTTCCGGCGCTGCAGCAGGTAGAGACTGCTCAGTCGCCTCCTTAAt                                                  >  2:1060545/4‑143 (MQ=255)
                                                                                        gTTCCCGGTTGCTAACAAGGCGTCCTGCCCGGTTAAAAGCCCCCCGCCGCAGCGGAGGGCAAATGGCAACCTTACTCGCCCTGTTCAGCAGCCGGAGCTTCCGGTGCTGCAGCAGGTTGAGACTGCTCAGTCGCTTCTTTAAt                                                  <  2:217177/143‑1 (MQ=255)
                                                                                         ttgccGGTTGCGAACAAGGCGCCCCGCCCGGTCAAAAGCCCCCCGCCGCAGCGGAGGGCAAATGGCACCCTTACTCGCCCTGTTCAGCAGCCGGAGCTTCCGGTGCTGTAGCAGGTTGAGACTGCTCAGTCGCTTCTTTAATg                                                 <  1:111739/140‑1 (MQ=255)
                                                                                         ttCCCGGTTGCTAACAAGGCGTCCTGCCCGGTTAAAAGCCCCCCGCCGCAGCGGAGGGCAAACAGCGCCGGTGCTCTGCCTATTTTGATTTCAGGCCTGCCGGTGCTGCAGCAGGTTGAGACTGCTCAGTCGCTTCTTTAATg                                                 <  1:811292/143‑1 (MQ=255)
                                                                                           cccGGTTGCTAACAAGGCGTCCTGCCCGGTTAAAAGCCCCCCGCCGCAGCGGAGGGCAAATGGCAACCTTACTCGCCCTGTTCAGCAGCCGGAGCTTCCGGTGCTGCAGCAGGTTGAGACTGCTCAGTCGCTTCTTTAATGCt                                               <  2:943314/143‑1 (MQ=255)
                                                                                           cccGGTTGCTAACAAGGCGTCCTGCCCGGTTAAAAGCCCCCCGCCGCAGCGGAGGGCAAATGGCAACCTTACTCGCCCTGTTCAGCAGCCGGAGCTTCCGGTGCTGCAGCAGGTTGAGACTGCTCAGTCGCTTCTTTAATGCt                                               <  1:707244/143‑1 (MQ=255)
                                                                                                   cTAACAAGGCGTCCTGCCCGGTTAAAAGCCCCCCGCCGCAGCGGAGGGCAAATGGCAACCTTACTCGCCCTGTTCAGCAGCCGGAGCTTCCGGTGCTGCAGCAGGTTGAGACTGCTCAGTCGCTTCTTTAATGCTCAGACGGa                                       <  1:1059273/143‑1 (MQ=255)
                                                                                                    tAACAAGGCGTCCTGCCCGGTTAAAAGCCCCCCGCCGCAGCGGAGGGCAAATAGCAACCTTACTCGCCCTGTTCAGCAGCCGGAGCTTCCGGTGCTGCAGCAGGTTGAGACTGCTCAGTCGCTTCTTTAATGCCGAGACGGAt                                      >  1:628072/1‑143 (MQ=255)
                                                                                                       cAAGGCGTCCTGCCCGGTTAAAAGCCCCCCGCCGCAGCGGAGGGCAAATGGCAACCTTACTCGCCCTGTTCAGCAGCCGGAGCTTCCGGTGCTGCAGCAGGTTGAGACTGCTCAGTCGCTTCTTTAATGCTCAGACGGATACg                                   >  2:955310/1‑143 (MQ=255)
                                                                                                       aaaGGCAGCCTGCCGGGTAAAAAGCCCACCGCCGCAGCGGAGGGCAAATGGCGTACTTTCTCTCTTTGTTCAGCAGCCGGAGCTTCCGGTGCTGCAGCAGGTTGAGACTGCTCAGTCGCTTCTTTAATGCTCAGACGGATACg                                   <  1:252968/142‑1 (MQ=255)
                                                                                                          ggCGTCCTGCCCGGTTAAAAGCCCCCCGCCGCAGCGGAGGGCAAATGGCAACCTTACTCGCCCTGTTCAGCAGCCGGAGCTTCCGGTGCTGCAGCAGGTTGAGACTGCTCAGTCGCTTCTTTAATGCTCAGACGGATACGGcc                                <  2:147890/143‑1 (MQ=255)
                                                                                                            cGTCCTGCCCGGTTAAAAGCCCCCCGCCGCAGCGGAGGGCAAATGGCAACCTTACTCGCCCTGTTCAGCAGCCGGAGCTTCCGGTGCTGCAGCAGGTTGAGACTGCTCAGTCGCTTCTTTAATGCTCAGCCGGATACGGCCCt                              >  2:60798/1‑143 (MQ=255)
                                                                                                             gTCCTGCACGGTTAAAAGCCCCCCGCCGCAGCGGAGGGCAAATGGCAACCTTACTCGCCGTGTTCAGCAGCCGGAGCTTCCGGTGCTGCAGCAGGTTGAGTCTGCTCAGTCGCTTCTTTAATGCTCAGACGGATACGGCCCTg                             >  1:4116/1‑143 (MQ=255)
                                                                                                                 tGCCCGGTTAAAAGCCCCCCGCCGCAGCGGAGGGCAAATGGCAACCTTACTCGCCCTGTTCAGCAGCCGGAGCTTCCGGTGCTGCAGCAGGTTGAGACTGCTCAGTCGCTTCTTTAATGCTCAGACGGATACGGCCCTGGCGa                         <  1:901565/143‑1 (MQ=255)
                                                                                                                   tccGGTTAAAAGCCTCTCGCGGCAGGGGATGTCAAATGGCATCCTTAGTCGCCCTGTTCAGCAGCCGGAGCTTCCGGTGCTGCAGCAGGTTGAGACTGCTCAGTTGCTTCTTTAATGCTCAGACGGATACTGCCCTGGCGATc                       <  2:935478/142‑1 (MQ=255)
                                                                                                                   cccGGTTAAAAGCCCCCCGCCGCAGCGGAGGGCAAATGGCAACCTTACTCGCCCTGTTCAGCAGCCGGAGCTTCCGGTGCTGCAGCAGGTTGAGACTGCTCAGTCGCTTCTTTAATGCTCAGACGGATACGGCCCTGGCGATc                       >  1:898017/1‑143 (MQ=255)
                                                                                                                         catttgCCCTCCGCTGCGGCGGGGGGCAAATGGCAACCTTACTCGCCCTGTTCAGCAGCCGGAGCTTCCGGTGCTGCAGCAGGTTGAGACTGCTCAGTCGCTTCTTTAATGCTCAGGCGGCTACGGCCCTGGCGAGCAACTTc                 >  1:46026/6‑143 (MQ=255)
                                                                                                                         caacaGCCCCCCGCCGCAGCGGAGCGCAAATGGCAACCTTACTCGCCCTGTTCAGCAGCCGGAGCTTCCGGTGCTGCAGCAGGTGGAGACTGCTCAGTCGCTTCTTTAATGCTCAGACGGATACGGCCCTGGCGATCAACTTc                 <  2:813574/139‑1 (MQ=255)
                                                                                                                           aaaGCCCCCCGCCGCAGCGGAGGGCAAATGGCAACCTTACTCGCCCTGTTCAGCAGCCGGAGCTTCCGGTGCTGCAGCAGGTTGAGACTGCTCAGTCGCTTCTTTAATGCTCAGACGGATACGGCCCTGGCGATCAACTTCCa               >  1:41456/1‑143 (MQ=255)
                                                                                                                             aGCCCCCCGCCGCAGCGGAGGGCAAATGGCAACCTTACTCGCCCTGTTCAGCAGCCGGAGCTTCCGGTGCTGCAGCAGGTTGAGACTGCTCAGTCGCTTCTTTAATGCTCAGACGGATACGGCCCTGGCGATCAACTTCCAGa             <  1:766916/143‑1 (MQ=255)
                                                                                                                               ccctccGCTGCGGCGGGGGGCAAATGGCAACCTTACTCGCCCTGTTCAGCAGCCGGAGCTTCCGGTGCTGCAGCAGGTTGAGACTGCTCAGTCGCTTCTTTAATGCTCAGACGGATACGGCCCTGGCGATCAACTTCCCGAAc           >  1:908457/1‑143 (MQ=255)
                                                                                                                                  cccGCCGCAGCGGAGGGCAAATGGCAACCTTACTCGCCCTGTTCAGCAGCCGGAGCTTCCGGTGCTGCAGCAGGTTGAGACTGCTCAGCCGACTCTTTAATGCTCAGGCGGCACCGGCCCCGGCCATCCACCTCCAGACCttc        >  2:952578/1‑142 (MQ=255)
                                                                                                                                        gcAGCGGAGGGCAAATGGCAACCTTACTCGCCCTGTTCAGCAACCGGAGCTTCCGGTGCTGCAGCAGGTTGAGACTGCTCAGTCGCTTCTTTAATGCTCAGACGGATACGGCCCTGGCGATCAACTTCCAGAACTTTCACCgg  <  1:526971/143‑1 (MQ=255)
                                                                                                                                          |                                                                                                                                            
TGCAAGCGTAAGTGCTGTCGCAACGAAACACCAGCGCAAAAAAGGCTTCATTTCCCACTCCCGAAGACCACGGTTGAATGAACGTCCTGTTCCCGGTTGCTAACAAGGCGTCCTGCCCGGTTAAAAGCCCCCCGCCGCAGCGGAGGGCAAATGGCAACCTTACTCGCCCTGTTCAGCAGCCGGAGCTTCCGGTGCTGCAGCAGGTTGAGACTGCTCAGTCGCTTCTTTAATGCTCAGACGGATACGGCCCTGGCGATCAACTTCCAGAACTTTCACCGG  >  NC_000913/3308874‑3309152

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: