| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 566777 = | NA (NA) | 1768 (42.040) | 264/278 | 0.0 | 97.8% | noncoding (1/1258 nt) | IS3 | repeat region |
| ? | NC_000913 | = 572471 | 40 (0.940) | coding (6/456 nt) | ybcN | DLP12 prophage; DNA base‑flipping protein | |||||
CGAAGATCGCAGAAATTAAAGCTAAGTTCGGACTGAAAGGAGCAAGTGTATGACGGGCAAAGAGGCAATTATTCATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCATTCGCCTGAATTTCGCAGTGAAGC > NC_000913/566635‑566909 | cGAAGATCGCAGAAATTAAAGCTAAGTTCGGACTGAAAGGAGCAAGTGTATGACGGGCAAAGAGGCAATTATTCATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCt > 1:101288/1‑143 (MQ=255) gAAGATCGCAGAAATTAAAGCTAAGTTCGGACTGAAAGGAGCAGGTGTATGACGGGCAAAGAGGCAATTATTCATCACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTg < 2:389197/143‑1 (MQ=255) gAAGATCGCAGAAATTAAAGCTAAGTTCGGACTGAAAGGAGCAAGTGTATGACGGGCAAAGAGGCAATTATTCATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCACCCGTAATCTg > 1:278155/1‑143 (MQ=255) gATCGCAGAAATTAAAGCTAAGTTCGGACTGAAAGGAGCATGTGTATGACGGGCAAAGAGGCAAGTGTTCATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATc > 1:189100/1‑143 (MQ=255) agaTTAAATCTAAGTTCGGACTGAAGGGGGCAAGTGTAGGACGGGCAAAGAGGCAAGTATTCATTACCTGGGGACGCATACGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAg < 2:484737/141‑1 (MQ=255) gCTAAGTTCGGACGGAAAGGAGCAGGTATATGCCGGGCAAAGAGGCAATTATTCATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTg < 1:724300/143‑1 (MQ=255) cGGACTGAAAGGAGCAAGTGTATGACGGGCAAAGAGGCAATTATTCATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACAcgcg > 1:124537/1‑143 (MQ=255) ggACTGAAAGGAGCAAGTGTATGACGGGCAAAGAGGCAATTATTCATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTTGACACGCgg > 1:398175/1‑143 (MQ=255) tGAAAGGAGCAAGTGTATGACGGGCAAAGAGGCAATTATTCATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGCACTCTGATCTTACCCAGCAATAGTGGACACGCGGCTaa > 1:335163/1‑143 (MQ=255) aaaGGAGCAAGTGTATGACGGGCAAAGAGGCAATTATTCATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCCGCAATAGTGGACCCGCGGCGAAGt > 2:455132/1‑143 (MQ=255) aaaGGACCAAGTGTATGGCGGGAAAAGAGGCAATGATGCATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGt < 1:428123/143‑1 (MQ=38) cAAGTGTATGACGGGCAAAGAGGCAATTATTCATTACCTGGGGACGCATAAGAGCTTCTGTCCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAAACTGATCTTACCCAGCAAGAGAGGACGCGCGGCTAAAGGAATaaa > 2:5601/1‑143 (MQ=255) cAAGGGCATGACGGGCAAAGAAGCAATTATTCATTACCTGGGGACGCATAAGCGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTaaa < 1:132909/143‑1 (MQ=255) aggtgtATGACGGGAAAGGAGTCAATTATTCATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAGCCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAAc < 2:27768/141‑1 (MQ=255) aagttgaTGACGGGCAAAGAGGCAATTGTTCGTTCCCTGGGGCCGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAAc < 2:750408/137‑1 (MQ=37) gtATGACGGGCAAAGAGGCAATTATTCATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACcctc > 1:729823/1‑143 (MQ=255) gaTGACGGGCAACGAGGCAATCATTCATTACCTGGGGACGCATAAGAGCTGCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCGACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCtca < 2:386221/142‑1 (MQ=255) ccGGGCAAAGAGGCAATTATTCCTTACCTCGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCCCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAATTGAGTAAACTCtcagtca < 2:686402/142‑1 (MQ=255) agCAAAGAGGCAATTATTCATTACCTGGGGACGCATAAGAGCTTCTGTCCACAGGACGTTGCCGCGGTAACAGCCGCAACCTTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCagag < 1:348308/142‑1 (MQ=255) aaaGAGGCAATTATTCATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTg > 1:664791/1‑143 (MQ=255) aaaGAGGCAATTATTCATTACCTGGGGACGCATAAGAGCTTCTGTGAACAGGACGTTGACGAGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAGTAGTGGACACGCGGCTAAGTGAATAAAATCTCAGTCagagata > 2:734224/1‑140 (MQ=37) aaTTATTCATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACAt > 1:417478/1‑143 (MQ=255) tattCATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAGCAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGAc < 1:697996/143‑1 (MQ=255) actACCTGCGGACGCAGAAGAGCGTCTGTGCACAGGACGTGGCCGCGGTAACAGGCGCAACCGTAATCGGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACaaaaa < 1:38936/141‑1 (MQ=21) aTTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGAGACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACaaaaa > 1:357730/1‑143 (MQ=255) ccTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGt > 1:308148/1‑143 (MQ=255) tGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGGGACTCACATGACAAAAGCAGTac > 2:655538/1‑142 (MQ=255) gACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCTATAGTTGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAAc < 1:371311/143‑1 (MQ=255) cGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCa < 1:94201/143‑1 (MQ=255) agagCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGa > 1:750508/1‑73 (MQ=255) agagCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGa < 2:750508/73‑1 (MQ=255) agCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTaaaaaa < 1:287429/143‑1 (MQ=255) gCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAAc < 1:62548/143‑1 (MQ=255) ttCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCGGCAATAGTGGACACGCGGCTAAGTGAGGAAACTCTCAGTCAGAGGTGACTGGCAGGACGAGAACAGTGTCAACCAGGaagacagcc > 2:500113/1‑136 (MQ=18) tCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCCATCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAAcccc < 2:551426/143‑1 (MQ=255) aGGACGTTGCCGCGGTAACAGGCACAACCGTAATCTGATCACACCCAGCAATAGAGGAAACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTAACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGc < 2:281401/143‑1 (MQ=17) ggACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAACACCCCGTAAACAGCa > 1:42445/1‑143 (MQ=255) ccGTTGCCGCGCTAACCGGCGCATCCGTAATCTGATCTTACCCCGCAATCGTGGACCCGCGGCTAAGTCAGTAAACTCTCAGTCAGAGGTGACTCACATGAATAAACCAGCATTAACCTGTAAAAAACCCCGTAAACAGCAtt < 2:198224/142‑1 (MQ=14) gTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGCGGTGACTCACATGACAAAAACAGCATCAACCATTAAAAAACACCGAAAAAAGCaaaag > 1:59367/1‑139 (MQ=17) ttGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCATTCGc < 1:669201/143‑1 (MQ=255) tGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCAGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGATTTCgtc < 2:729823/143‑3 (MQ=255) gCCCCGGTAACAGGCGCAACCGTAATCTCATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCGCGTAAACAGCATTCGCCt < 1:574964/143‑1 (MQ=255) cgcgGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCAGTAAACAGCATTCGCCTGa > 1:634035/1‑143 (MQ=255) gcgGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCGAAGTGAGTAAACGCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCATTCGCCTGaa < 2:149056/143‑1 (MQ=255) ctggCGCACCCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCATTCGCCTGAATTTCGCa < 1:438824/141‑1 (MQ=21) aGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCATTCGCCTGAATTTCGCAg > 2:443540/1‑143 (MQ=38) tgaaCCGTGATCTGATGTTACCCAGCAGTAGTGGACACGCGGCTAAGTGAGGAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCATTCGCCTGAATTTCGCAGTGaa < 2:765/141‑1 (MQ=255) ggtcGTAATCTGATCTTACCCAGCAATAGTGGACCCGCGGCTAAGTGAGTAACCTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCATTCGCCTGAATTTCGCAGTGAAGc < 1:542212/140‑1 (MQ=0) aaCCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCATTCGCCTGAATTTCGCAGTGaaac > 1:579047/1‑141 (MQ=17) | CGAAGATCGCAGAAATTAAAGCTAAGTTCGGACTGAAAGGAGCAAGTGTATGACGGGCAAAGAGGCAATTATTCATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCATTCGCCTGAATTTCGCAGTGAAGC > NC_000913/566635‑566909 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |