| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 572471 | 40 (0.940) | 15 (0.470) +TGATCTTACCCAGCAATAGTGGACACGCGGCTAA |
10/212 | 2.1 | 39.8% | coding (6/456 nt) | ybcN | DLP12 prophage; DNA base‑flipping protein |
| ? | NC_000913 | = 2170235 | 20 (0.470) | noncoding (65/1258 nt) | IS3 | repeat region | |||||
GATATTTTTGGCGGTCATTAATCCTTCGGCGATAAGCATTGTCGTACTTCCGCTGTCGAGAATAACGGTCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTA‑AACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCATTCGCCTGAATTTCGCAGTGAAGCCCTGAAGCTTGCTGAACGCATCGGTGTTACTGCCGCAGCCCGTGAACTCAGCCTGTATGAATCACAACTCTAC > NC_000913/2170101‑2170376 | gATATTTTTGGCGGTCATTAATCCTTCGGCGATAAGCATTGTCGTACTTCCGCTGTCGAGAATAACGGTCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTA‑AACTCTCAGTCCGAGGTGACTCACATGACaaa > 1:659835/1‑143 (MQ=255) tatTTTTGCCGGTCATTAATCCTTCGGCGATAAGCATTGTCGTACTTCCGCTGTCGACAATAACGGTCTGATCTTACCCAGCACTCGTGGACACGCGGCTAAGTGAGTA‑AACTCTCAGTCAGAGGTGACTCACCTGCCaagaa > 2:444393/1‑143 (MQ=25) tatTGTCGGCGGTCAATAATCCTTCGGCGATAAGCATTGTCGTACTGCTGCTGTCAACACAAACGGTCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTA‑AACTCTCAGTCAGAGGTGACTCACATGACaaaaa < 2:374670/143‑1 (MQ=18) ttttGGCGGTCATTAATCCTTCGGCGATAAGCATTGTCGTACTTCCGCTGTCGAGAATAACGGTCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTA‑AACTCTCAGTCAGAGGTGACTCACATGACAAAAACAg < 1:718955/143‑1 (MQ=255) tttGGCGGGGATTAATGCTTCGGCGATAAGCATTGTCGTACTTCCGCTGTCGAGAATAACGGTCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTA‑AACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGt < 1:752045/143‑1 (MQ=255) gtgtctgTCATTAGTCCTTCGGCGATAAGCATTGTCGTACTTCCGCTGTCGAGAATGACGGTCTGATCTTACACAGCAATAGTGGACACGCGGCTAAGTGAGTA‑AACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTa < 2:151346/137‑1 (MQ=21) gTCATTAATCCTTCGGCGATAAGCATTGTCGTACTTCCGCTGTCGAGAATAACGGTCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTA‑AACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGGATCAAcc > 1:741211/1‑143 (MQ=255) ttAATCCTTCGGCGATAAGCATTGTCGTACTTCCGCTGTCGAGAATAACGGTCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTA‑AACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTa > 2:315707/1‑143 (MQ=255) ttCGGCGATAAGCATTGTCGTACTTCCGCTGTCGAGAATAACGGTCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTA‑AACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAAcc > 1:196994/1‑143 (MQ=255) tCGGCGATAAGCATTGTCGTACTTCCGCTGTCGAGAATAACGGTCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTA‑AACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAAccc < 2:335992/143‑1 (MQ=255) cGGCGATAAGCATTGTCGTACTTCCGCTGTCGAGAATAACGGTCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTA‑AACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAAcccc < 1:353302/143‑1 (MQ=255) cATTGTCGTACTTCCGCTGTCGAGAATAACGGTCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTA‑AACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGGATCAACCAGTCAAAAACCCCGGAAACAGCa > 1:199740/1‑143 (MQ=255) ttGTCGTACTTCCGCTGTCGAGAATAACGGTCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTA‑AACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCAtt > 1:623522/1‑143 (MQ=255) tCGTACTTCCGCTGTCGAGAATAACGGTCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTA‑AACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCATTCGc < 1:714535/143‑1 (MQ=255) tCGTACCTCCGCTCGCGAGAATACCGGTCTGACCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTA‑AACTCTCAGTCAGACGTCACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCATTCGc < 1:485281/143‑1 (MQ=14) acatgcagaATAGCCGTCGGATCTTGCCCAGCAATAGTGGACACGCGGCTAAGTGAGTA‑AACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCATTCGCCTGAATTTCGc < 2:743762/137‑1 (MQ=11) tggcGAGAATAACGGTCGGATCGTACCCAGCAATAGGGGACAGGCGCTTTAGT‑AGTACAACTCGCAGTCAGAGGTGACGCACATGACAAAACCAGTATCAACCAGTAAAAAACCCCGTAAACAGCATTCGCCTGAATTTCGCa < 1:176995/140‑1 (MQ=14) tCGAGAATAACGGTCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTA‑AACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCATTCGCCTGAATTTCGCAGt > 1:623452/1‑143 (MQ=40) aaTAACGGTCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTA‑AACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAAACCCGTAAACAGCATTCGCCTGAATTTCGCAGTGAAGc > 2:47424/1‑143 (MQ=25) caaCGGTCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTA‑AACTCTCAGTCAGAGGTGCCTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCATTCGCCTGAATTTCGCAGTGAAGctc < 1:408919/142‑3 (MQ=18) tGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTA‑AACTCTCAGTCAGAGGTGACTCACttagccgcgtgtccactattgctgggtaagatcagttcacgcttcccctccgcagaggtcaaacgctagatgcaaaga < 1:430493‑M2/143‑79 (MQ=255) aGCAATAGTGGACACGCGGCTAAGTGAGTA‑AACTCTCAGTCAGAGGTGACTCACttagccgcgtgtccactattgctgggtaagatcagttcacgcttcccctccgcagaggtcaaacgctagatgcaaagaattgcaggtgc < 1:620517‑M2/143‑90 (MQ=255) gCTAAGTGAGTA‑AACTCTCAGTCAGAGGTGACTCACttagc > 2:86808‑M2/1‑36 (MQ=255) gCTAAGTGAGTA‑AACTCTCAGTCAGAGGTGACTCACttagc < 1:86808‑M2/41‑6 (MQ=255) cTAAGTGAGTA‑AACTCTCAGTCAGAGGTGACTCACttagccgcgtgtccactattgctgggtaagatcagttcacgcttcccctccgcagaggtcaaacgctagatgcaaagaattgcaggtgcatttctgcatctgtgacgg < 1:116758‑M2/143‑109 (MQ=255) tAAGTGAGTA‑AACTCTCAGTCAGAGGTGACTCACttagccgcgtgtgcactattgctgggtaagatgagttcacgcttcccctccgcagagggcaaacgctagatgcaaagaattgcaggtggatttctgcatctgtgcaggg < 1:719634‑M2/143‑110 (MQ=255) tAAGTGAGTA‑AACTCTCAGTCAGAGGTGACTCACttagccgcgtgtccactattgctgggtaagatcagttcacgcttcccctccgcagaggtcaaacgctagatgcaaagaattgcaggtgcatttctgcatctgtgaaggg < 2:327304‑M2/143‑110 (MQ=255) aaGTGAGTA‑AACTCTCAGTCAGAGGTGACTCACttagccgcgtgtccactattgctgggtaagatcagttcacgcttcccctccgcagaggtcaaacgctagatgcaaagaattgcaggtgcatttctgcatctgtgaagggc < 2:442496‑M2/143‑111 (MQ=255) aGTGAGTA‑AACTCTCAGTCAGAGGTGACTCACttagccgcgtgtccactattgctgggtaagatcagttcacgcttcccctccgcagaggtcaaacgctagatgcaaagaattgcaggtgcatttctgcatctgtgaagggag < 1:661829‑M2/143‑112 (MQ=255) aGTA‑AACTCTCAGTCAGAGGTGACTCACttagccgcgtgtccactattgctgggtaagatcagttcacgcttcccctccgcagaggtcaaacgctagatgcaaagaattgcaggtgcatttctgcatctgtgaagggagaaga > 1:442496‑M2/1‑28 (MQ=255) tA‑AACTCTCAGTCAGAGGTGACTCACttagccgcgtgtccactattgctgggtaagatcagttcatgcttcccctccgcagaggtcaaacgctagatgcaaagaattgcaggtgcatttctgcatctgtgaagggagaagaga < 1:244737‑M2/143‑118 (MQ=255) tCACttagccgcgtgtccactattgctgggtaagatcagttcacgcttcccctcggccgaggtcaaacgctagatgcaaagaattgcaggtgcatttctgcatctgtgaagggagaagagagtttggattgtatgtgcgcgta < 1:215492‑M2/143‑140 (MQ=255) tCACttagccgcgtgtccactattgctgggtaagatcagttcacgcttcccctccgcagaggtcaaacgctagatgcaaagaattgcaggtgcatttctgcatctgtgaagggagaagacagtttggattgtatgtgcgctta < 2:782342‑M2/143‑140 (MQ=255) tCACttagccgcgtgtccactattgctgggtaagatcagttcacgcttcccctccgcagaggtcaaacgctagatgcaaagaattgcaggtgcagttctgcatctgtggagggagaagagcggttggattgtgtgtgagccta < 2:340703‑M2/143‑140 (MQ=255) aCttagccgcgtgtccactattgctgggtaagatcagttcacgcttcccctccgcagaggtcaaacgctagctgcaaagaatcgcaggtgcatttctgcatctgtgaaggcagaacagagtttggattctacgtgcgcatcaa < 2:504129‑M2/143‑142 (MQ=255) aCttagccgcgtgtccactattgctgggtaagatcagttcacgcttcccctccgcagaggtcaaacgctagatgcaaagaattgcaggtgcatttctgcatctgtgaagggagaagagagtttggattgtatgtgcgcatcaa < 1:287662‑M2/143‑142 (MQ=255) aCttagccgcgtgtccactattgctgggtaagatcagttcacgctgcccctccgcagaggtcaaacgctagatgcacagaattgcaggtgcatttctgcaccggcgaagggagaagaggggttggagtgtatgtgcgcatcaa < 2:306809‑M2/143‑142 (MQ=255) | GATATTTTTGGCGGTCATTAATCCTTCGGCGATAAGCATTGTCGTACTTCCGCTGTCGAGAATAACGGTCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTA‑AACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCATTCGCCTGAATTTCGCAGTGAAGCCCTGAAGCTTGCTGAACGCATCGGTGTTACTGCCGCAGCCCGTGAACTCAGCCTGTATGAATCACAACTCTAC > NC_000913/2170101‑2170376 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |