| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 1207790 = | 2 (0.050) | 38 (1.010) | 31/248 | 0.2 | 92.9% | coding (290/630 nt) | ycfK | e14 prophage; protein StfP |
| ? | NC_000913 | 1209619 = | 4 (0.110) | pseudogene (37/537 nt) | stfE | e14 prophage; putative side tail fiber protein fragment | |||||
ATAAGCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAACGTAATGCGCTGAA > NC_000913/1209482‑1209752 | tgcttttgcggcattccacccccactgaatgattactgattgctcaataccaccaatcataaccggtatagctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTa < 2:224008‑M2/6‑1 (MQ=255) ggcattccacccccactgaatgattactgattgctcaataccaccaatcataaccggtatagctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTCATGAAAATga > 2:529356‑M2/129‑143 (MQ=255) tccacccccactgaatgattactgattgctcaataccaccaatcataaccggtatagctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccgtctcccaaaccaaCGTTTATGAAAATGAAGaaa < 1:719126‑M2/20‑1 (MQ=255) ccccccactgaatgattactgattgctcaatgccaccaatcataaccggtatagctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATaa < 2:533790‑M2/23‑1 (MQ=255) gggTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACa < 2:701710/143‑1 (MQ=255) ccgcgaatgattactgattgctcaacaccaccaatcataaccggtatagctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGc < 1:601447‑M2/28‑1 (MQ=255) tgaatgattactgattgctcaataccaccaatcataaccggtatagctatgaaaccggtgcgtcctaatatagccgttgatgaattgagttttgctccttctcccaaaccaaAGTTTATGAAATTGAAGAAATAACAAGCaaa > 2:196600‑M2/113‑143 (MQ=255) aatgattactgattgctcaataccaccaatcataaccggtatagctatgaaaccggtgcgtcctaatgtagccgttgctgcatcgagttttcctccttctcccaaaccaaAGTTTATGAAAATGAAGAAATAACAAGCAAATg < 2:408670‑M2/33‑1 (MQ=255) aatgatgactggttgctcaatacccacaatcagagccggtatagcgatgaacccggtgcttcctaatgtagccgttgctgcattgagttttgcaccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATg < 2:243065‑M2/33‑1 (MQ=255) gattactgattgctcaataccaccaatcgtaaccggtatagctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTCATGAACATGAAGAACTAACAAGCAACTCGca > 2:642748‑M2/108‑143 (MQ=255) agtactgattgctcaataccaccaatcataaccggtatagctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGcat < 1:233315‑M2/37‑1 (MQ=255) tactgattgctcaataccaccaatcataaccggtatagctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGcatca > 1:724380‑M2/105‑143 (MQ=255) attgctcaataccaccaatcataaccggtatagctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCt < 1:373783‑M2/44‑1 (MQ=255) ttgctcaataccaccaatcataaccggtatagctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAGATAACAAGCAAATGGCATCATTCCTg < 1:760182‑M2/45‑1 (MQ=255) ctgcccaataccaccaatcataaccggtatagctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTg < 1:298614‑M2/45‑1 (MQ=255) tgctcaataccaccaatcataaccggtatagctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAGAATGAAGAAATAACAAGCAAATGGCATCATTCCtgg > 1:636260‑M2/98‑142 (MQ=255) ataccaccaatcatatccgggatatctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTAc < 2:39317‑M2/52‑1 (MQ=255) cctcaccgttatagctatgaaaccggtgcgtcctaatgtagccgttgccgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAATTAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGAttt < 1:67581‑M2/63‑1 (MQ=255) cataaccggtatagctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATACCAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGAttt > 1:165664‑M2/81‑143 (MQ=255) ataaccggtatagctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCCTtaaccaggggcgataa > 2:206886‑M2/80‑137 (MQ=255) gcccgccGGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCCACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTaa < 1:34901/143‑1 (MQ=255) cggtatagctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctcattctcccaaacgaaCGTTTATGACAATGAAGAAATAACAAGCAAATGGCACCATTCGTGCTTGTACCAGGGGGatgtaaactg > 2:663907‑M2/75‑139 (MQ=255) cggtatagctatgaaaccggcgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATg > 1:414551‑M2/75‑143 (MQ=255) ttagctatgataccggtggtccctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAGCAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTa < 2:505511‑M2/73‑1 (MQ=255) atagctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGATTa < 2:318255‑M2/73‑1 (MQ=255) agctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGCAGAAATAACAAGCAAATGGCATCATTCCTACTTTTACCAGTGGGATTTAACACGcttctt > 1:654778‑M2/69‑143 (MQ=255) cgtgcgttctaatgtggcccttgctgcattgagtttttctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAATAAGCAAATGGCATCATTCCTGCTTTTACAAGCGAAAATTAACATGCTTATTGGCTATGTAcgc < 2:475724‑M2/87‑1 (MQ=255) ggtcACGGAGGCGGGACACCAAGAGGTAGTGCAGAGCTTTGTCCGAAGCGAACGTGTATGAAAGTGAAGAAATAGCAAGCAAATGGCATCATTCCTGCGTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTAt < 2:19351/140‑1 (MQ=255) tcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATca > 1:523446‑M2/51‑143 (MQ=255) ccACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTACCAAACCAACGTATATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCAGTTACCAGGGGGCTGTAACATGCCTATTGGCTATGCACGCGTAGca > 2:742848/1‑143 (MQ=255) aatgtagccgttgcttcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATcaacaa < 1:763440‑M2/97‑1 (MQ=255) tgtagccgttgctgcattgagttttgctccttctcccaatccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAAt < 1:93936‑M2/99‑1 (MQ=255) tgtagccgttgctgcattgaggtttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAAt < 2:231330‑M2/99‑1 (MQ=255) agccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGAc < 2:500591‑M2/102‑1 (MQ=255) agccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGAc < 1:441619‑M2/102‑1 (MQ=255) ctgttgcttcattgagtttttctccttcccccaaaccagCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCa < 2:695523‑M2/104‑1 (MQ=255) ttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCCTCATTCCTGCTTTTACCAGGGGGATTTAAAATGGCTACATGCGATGTACGCGTATCAACAAATGACCAGaa > 2:341776‑M2/37‑143 (MQ=255) gctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAGTGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCGATGTACGCGTATCAACACATGACCAGAaca > 2:75750‑M2/35‑143 (MQ=255) ttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACaa > 2:774707‑M2/24‑143 (MQ=255) tttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAAc < 1:774707‑M2/121‑1 (MQ=255) tttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAAc < 2:356172‑M2/121‑1 (MQ=255) ttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTAGGTACGCGTATCAACAAATGACCAGAACACAGAACTACAACg > 1:407363‑M2/22‑143 (MQ=255) tccTTCTCCCAAACCAACGTTTCTGCAAATGAAGAAATAACACGCAACTGCCATGATGCGTGCCCTCACGCCGATTTTTTAACCTGCTTATTGGCTCGGTACGCGTGTGAACAAATGACAAGAACACAGATCTACCACGTAAt > 2:681405/2‑143 (MQ=255) cccaaaccaaCGATTAAGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATATACAACGTAATGCGCAGa > 2:765122‑M2/11‑143 (MQ=255) ccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAACGTAATGCGCTGaa > 2:724138‑M2/10‑143 (MQ=255) | ATAAGCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAACGTAATGCGCTGAA > NC_000913/1209482‑1209752 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |