| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 3,473,614 | C→T | W156* (TGG→TGA) | rpsG ← | 30S ribosomal subunit protein S7 |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 3,473,614 | 0 | C | T | 97.6% | 120.8 / NA | 42 | W156* (TGG→TGA) | rpsG | 30S ribosomal subunit protein S7 |
| Reads supporting (aligned to +/- strand): ref base C (0/0); major base T (25/16); minor base G (1/0); total (26/16) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
CCGATGTTACGGTAGCGTGCGATGGGTGTTGTACGAGCCATTTGTTTCCTCGTTTATCTTTTAGGCGTTCAATTTAAGTAGCCCAAAGCGGGCTGCTTACTGGAAGCGCCCGCCTGGTGACTAAAACTCCGAAGGGATAACCAACGGTAGTGTGCGAACGCCTTGTTGGCTTCGGCCATACGGTGAACGTCTTCACGTTTCTTAACTGCAGTACCTTTGTTTTCTGCAGCATCAGAAAGTTCGTTCGCCAGGCGCAGAGCCATGGATTTATCACCGC > NC_000913/3473474‑3473750 | ccGATGTTACGGTAGCGTGCGATGGGTGTTGTACGAGCCATTTGTTTCCTCGTTTATCTTTTAGGCGTTCAATTTAAGTAGCCCAAAGCGGGCTGCTTACTGGAAGCGCCCGCATGGTGACTAAAACTCCGAAGGGATAATCa > 2:739330/1‑143 (MQ=255) tGTTACGGTAGCGTGCGATGGGTGTTGTACGAGCCATTTGTTTCCTCGTTTATCTTTTAGGCCTTCAATTTAAGTAGCCCAAAGCGGGCTGCTTACTGGAAGCGCCCGCCTGGTGACTAAAACTCCGAAGGGATAATCAACgg < 1:391566/143‑1 (MQ=255) gTTACGGTAGCGTGCGATGGGTGTTGTACGAGCCATTTGTTTCCTCGTTTATCTTTTAGGCGTTCAGTTTAAGTAGCCCAAAGCGGGCTGCTTACTGGAAGCGCCCGCCTGGTGACTAAAACTCCGAAGGGATAATCAACGGt > 1:167688/1‑143 (MQ=255) gcGGTAGCGTTCTATGGGTGTTGTACGAGCCATTTGTTTCCTCGTTTATCTTTTAGGCGTTCAATTTAAGTAGCCCAAAGCGGGCTGCTTACTGGAAGCGCCCGCCTGGTGACTAAAACTCCGAAGGGATAATCAACGGTAgt < 2:368630/142‑1 (MQ=255) tAGCGTGCGATGGGTGTTGTACGAGCCATTTGTTTCCTCGTTTATCTTTGAGGCGTTCAAGTTAAGTAGCCCAAAGCGGGCTGCTTACTGGAAGTGCCCGCCTGGCGACTAAAACTCCGACGGGATAATCACCGGTAGTGTGc > 2:309348/1‑143 (MQ=255) gCGTGCGATGGGTGTTGTACGAGCCATTTGTTTCCTCGTTTATCTTTTAGGCGTTCAATTTAAGTAGCCCAAAGCGGGCTGCTTACTGGAAGCGCCCGCCTGGTGACTAAAACTCCGAAGGGATAATCAACGGTAGTGTGCGa > 2:354832/1‑143 (MQ=255) gTGCGATGGGTGTTGTACGAGCCATTTGTTTCCTCGTTTATCTTTTAGGCGTTCAATTTAAGTCGCCCAAATCGGGCTGCTTACTGGAAGCGCCCGCCTGGTGACTAAAACTCCGAAGGGATAATCAACGGTCGTGTGCGAAc > 2:129533/1‑143 (MQ=255) gATGGGTGTTGTACGAGCCATTTGTTTCCTCGTTTATCTTTTAGGCGTTCAATTTAAGTAGCCCAAAGCGGGCTGCTTACTGGAAGCGCCCGCCTGGTGACTAAAACTCCGCAGGGATAATCAACGGTCGTGTGCGCACGCCt > 1:297802/1‑143 (MQ=255) aTGGGTGTTGTACGGGCCATTTGTTTCCTCGTTTATCTTGTAGTGGTTCAAGTTAAGTAGCCCAAAGCGGGCTGCTGACTGATGGTGCCCGCCTGGTGACTAAAACTCCGAAGGGATAATCAACGGTAGTGTGCGAACGCCtt < 2:514848/143‑1 (MQ=255) tGGGTGTTGTACGAGCCATTTGTTTCCTCGTTTATCTTTTAGGCGTTCAATTTAAGTAGCCCAAAGCGGGCTGCTTACTGGAAGCGCCCGCCTGGTGACTAAAACTCCGAAGGGATAATCAACGGTAGTGTGCGAACGCCttg < 1:621506/143‑1 (MQ=255) tctgttgtACGGGTCATTTGTTTCCTCGTTTATCTTTTAGGCGTTCAATTCAAGCCGCCCAAAGCGGGCTGCTTACTGGCAGCGCCCGCCTGGTGACTACATCTCCGAAGGGATAATCAACGGTAGTGTGCGAACGCCttgtt < 2:318919/141‑1 (MQ=255) gtgtTGTACGAGCCATTTGTTTCCTCGTTTATCTTTTAGGCGTTCAATTTAAGTAGCCCAAAGCGGGCTGCTTACTGGAAGCGCCCGCCTGGTGACTAAAACTCCGAAGGGATAATCAACGGTAGCGTGCGAACGCCttgttg > 2:284822/1‑143 (MQ=255) tgttgtACGAGCCATTTGTTTCCTCGTTTATCTTTTAGGCGTTCAATTTAAGTAGCCCAAAGCGGGCTGCTTACTGGAAGCGCCCGCCTGGTGACTAAAACTCCGAAGGGATAATCAACGGTAGGGGGCGAACGCCTtggtgg > 2:155519/1‑143 (MQ=255) gtAGGAGCCAGTTGTTTCCTCGTTTATCTTTTAGGCGTTCAATTTAAGTAGCCCAAAGCGGGCTACTTACTGGAAGCGCCCGCCTGGTGACTAAAACTCCGAAGGGATAATCAACGGTAGTGTGCGAACGCCTTGTTGGCTTc < 2:456226/143‑1 (MQ=255) gaaccATTTGTTTCCTCGTTTATCTTTTAGGAGTTCAATTTAAGTAGCCCAAAGCGGGCTACTTACTGGAAGCGCCCGCCTGGTGCATAAAACTCCGACGGGAAAATCAAAAGTAGTGTGCGAACGCCCTGTTGGCTTCgact > 2:127826/4‑140 (MQ=255) aTTTGTTTCCTCGTTTATCTTTTAGGCGTTCAATTTAAGTAGCCCACAGCGGGCTGCTTACTGGAAGCGCCCGCCTGGTGACTAAACCTCCGAAGGGATAATCACCGGTATTGAGCGAAGGCCTCGTTGGCTGCGGCTATCCg > 2:125585/1‑143 (MQ=255) tttGTTTCCTCGTTTATCTTTTAGGCGTTCAATTTAAGTAGCCCACAGCGGGCTGCTTACTGGAAGCGCCCGCCTGGTGACTAAACCTCCGAAGGGATAAGCAACGGTGGTGTGCGAACGCGTTGTTGGCTGCGCCCAtcggg > 2:769191/1‑139 (MQ=255) tttGTTTCCTCGTTTATCTTTTAGGCGTTCAATTTAAGTAGCCCAAAGCGGGCTGCTTACTGGAAGCGCCCGCCTGGTGACTAAAACTCCGAAGGGATAATCAACGGTAGTGTGCGACCGCCTTGTTGGCTTCGGCCATACgg > 1:145185/1‑143 (MQ=255) tttGTTTCCTCGTTTATCTTTTAGGCGTTCAATTTAAGTAGCCCAAAGCGGGCTGCTTACTGGAAGCGCCCGCCTGGTGACTAAAACTCCGAAGGGATAATCAACGGTAGTGTGCGAACGCCTTGTTGGCTTCGGCCATACgg > 2:470007/1‑143 (MQ=255) tCGTTTATCTTTTAGGCGTTCAATTTAAGTAGCCCAAAGCGGGCTGCTTACTGGGAGCGCCCGCCTGGTGACTAAAACTCCGAAGGGATAATCAACGGTAGTGTGCGAACGCCTTGTTGGCTTCGGCCATACGGTGAACGTCt > 1:413692/1‑143 (MQ=255) tttAGGTGTGCAATTTCATTCGGCCAAGGCGGGCTGCTTACTGGGAGCGCCCGCCTGGTGACGAAAGCTCCGAAGGGATAATCAATGGTAGTGTGCGAACGCCTTGTTGGCTTCGGCCATACGGTGAACGTCTTCACGTTTCt < 2:258042/143‑1 (MQ=255) ttAGGCGTTCAATTTAAGTAGCCCAAAGCGGGCTGCTTACTGGAAGCGCCCGCCTGGTGACTAAAACTCCGAAGGGATAATCAACGGTAGTGTGCGAACGCCTTGTTGGCTTCGGCCATACGGTGAACGTCTTCACGTTTCtt > 2:158488/1‑143 (MQ=255) ttAAGTAGCCCAAAGCGGGCTGCTTACTGGAAGCGCCCGCCTGGTGACTAAAACTCCGAAGGGATAATCAACGGTAGTGTGCGAACGCCTTGTTGGCTTCGGCCATACGGTGAACGTCTTCACGTTTCTTAACTGCAGTACCt > 1:71464/1‑143 (MQ=255) aaGTAGCCCAAAGCGGGCTGCTTACTGGAAGCGCCCGCCTGGTGACTAAAACTCCGAAGGGATAATCAACGGTAGTGTGCGAACGCCTTGTTGGCGTCGGCCATACGGTGAACGTCTTCACGTTTCTTAACTGCAGTACCttt < 1:308807/143‑1 (MQ=255) cgacggggggCTGCCGACTGGAAGCGTCCGCCTGGTGACTAGAACTCCGAAGGGATAATCAACGGTAGTGTGCGAACGCCTTGTTGGCTTCGGCCATACGGTGAACGTCTTCACGTTTCTTAACTGCAGTACCTTTGTTTTCt < 2:288843/136‑1 (MQ=255) cGGGCTGCTTACTGGAAGCGCCCGCCTGGTGACTAAAACTCCGAAGGGATAATCAACGGTAGTGTGCGAACGCCTTGTTGGCTTCGGCCATACGGTGAACGTCTTCACGTTTCTTAACTGCAGTACCTTTGTTTTCTgcagca > 1:183144/1‑143 (MQ=255) ctgctTACTGGAAGCGCCCGCCTGGTGACTAAAACTCCGAAGGGATAATCAACGGTAGTGTGCGAACGCCTTGTTGGCTTCGGCCATACGGTGAACGTCTGCACGTTTCTTCACTGCAGTGCCTCTGTTTCCTGCAGCATCat > 1:594823/1‑142 (MQ=255) tgctTACTGGAAGCGCCCGCCTGGTGACTAAAACTCCGAAGGGATAATCGACGGTAGTGTGCGAACGCCTTGTTGGCTTCGGCCATACGGTGAACGGCTTCACGTTTCTTAGATGGAGTACCTTTGTGTTATGCAGCATAAGa > 2:185592/1‑143 (MQ=255) ctTACTGGAAGCGCCCGCCTGGTGACTAAAACTCCGAAGGGATAATCAACGGTAGTGTGCGAACGCCTTGTTGGCTTCGGCCATACGGTGAACGTCTTCCCGTCTCTTAACTGCAGAACCTTTGTATTCTGCAGCATCAGaaa > 1:670482/1‑143 (MQ=255) ctTACTGGAAGCGCCCGCCCGGTGACTAACACTCCGAAGGGATAATCAACGGTAGTGTGCGAACGCCTTGTTGGCTTCGGCCATACGGTGAACGTCTTCACGTTTCTTAACTGCAGTACCTTTGTTTTCTGCAGCATCAGaaa < 1:422470/143‑1 (MQ=255) gcgcCCGCCTGGTGACTAAAACTCCGAAGGGATAATCAACGGTAGTGTGCGAACGCCTTGTTGGCTTCGGCCATACGGTGAACGTCTTCACGTTTCTTAACTGCAGTACCTTTGTTCACATCAGCAGCAGAAAGTTCGTTCGc > 2:3894/1‑143 (MQ=255) ccgccTGGTGACTAAAACTCCGAAGGGATAATCAACGGTAGTGTGCGAACGCCTTGTTGGCTTCGGCCATACGGTGAACGTCTTCACGTTTCTTACCTGCAGTACCTTTGTTTTCTGCAGCATCAGAAAGTTCGTTCGCCAgg < 1:379886/143‑1 (MQ=255) ccgccTGGTGACTAAAACTCCGAAGGGATAATCAACGGTAGTGTGCGAACGCCTTGTTGGCTTCGGCCATACGGTGAACGTCTTCACGTTTCTTAACTGCAGTACCTTTGTTTTCTGCAGCATCAGAAAGTTCGTTCGCCAgg < 1:750402/143‑1 (MQ=255) gTGACAAAAACTCCGAAGGGATAATCAACGGTAGTGTGCGAACGCCTTGTTGGCTTCGGCCATACGGTGAACGTCTTCACGTTTCTTAACTGCAGTACCTTTGTTTTCTGCAGCATCAGAAAGTTCGTTCGCCAGGCGCagag < 1:560948/143‑1 (MQ=255) accTCCGAAGGGATAATCAACGGTAGTGTGCGAACGCCTTGTTGGCTTCGGCCATACGGTGAACGTCTTCACGTTTCTTAACTGCAGTACCTTTGTTTTCTGCAGCATCAGAAAGTTCGTTCGCCAGGCGCAGAGCCATGGAt < 2:653412/141‑1 (MQ=255) aaCTCCGAAGGGATAATCAACGGTAGTGTGCGAACGCCTTGTTGGCTTCGGCCATACGGTGAACGTCTTCACGTTTCTTAACTGCAGTACCTTTGTTTTCTGCAGCATCAGAAAGTTCGTTCGCCAGGCGCAGAGCCATGGAt > 1:25133/1‑143 (MQ=255) aCTCCGAAGGGATAATCAACGGTAGTGTGCGAACGCCTTGTTGGCTTCGGCCATACGGTGAACGTCTTCACGTTTCTTAACTGCAGTACCTTTGTTTTCTGCAGCATCAGAAAGTTCGTTCGCCAGGCGCAGAGCCATGGAtt < 1:574648/143‑1 (MQ=255) cTCCGAAGGGATAATCAACGGTAGTGTGCGAACGCCTTGTTGGCTTCGGCCATACGGTGAACGTCTTCACGTTTCTTAACTGCAGTACCTTTGTTTTCTGCAGCATCAGAAAGTTCGTTCGCCAGGCGCAGAGCCATGGAttt < 1:291319/143‑1 (MQ=255) tCCGAAGGGATAATCAACGGTAGTGTGCGAACGCCTTGTTGGCTTCGGCCATACGGTGAACGTCTTCACGTTTCTTAACTGCAGTACCTTTGTCTTCTGCAGCATCAGAAAGTTCGTTCGCCAGGCGCAGAGCCATGGATTTa > 1:462934/1‑143 (MQ=255) cGAAGGGATAATCAACGGTAGTGTGCGAACGCCTTGTTGGCTTCGGCCATACGGTGAACGTCTTCACGTTTCTTAACTGCAGTACCTTTGTTTTCTGCAGCATCAGACAGTTCGTTCGCCCGGCGCACAGCCATGGCtttccc > 2:315575/1‑140 (MQ=255) aagataTAATCAACGGTAGTGTGCGAACGCCTTGTTGGCTTCGGCCATACGGTGAACGTCTTCACGTTTCTTAACTGCAGTACCTTTGTTTTCTGCAGCATCAGAAAGTTCGTTCGCCAGGCGCAGAGCCATGGATTTATCAc > 2:318308/6‑143 (MQ=255) ggATAATCAACGGTAGTGTGCGAACGCCTTGTTGGCTTCGGCCATACGGTGAACGTCTTTACGTTTTTTAACTGCAGTACCTTTGTTTTGTGCAGCATCAGAAAGTTCGTTCGCCAGGGGCAGAGCGATGGATGTATCACcgg > 1:110740/1‑142 (MQ=255) | CCGATGTTACGGTAGCGTGCGATGGGTGTTGTACGAGCCATTTGTTTCCTCGTTTATCTTTTAGGCGTTCAATTTAAGTAGCCCAAAGCGGGCTGCTTACTGGAAGCGCCCGCCTGGTGACTAAAACTCCGAAGGGATAACCAACGGTAGTGTGCGAACGCCTTGTTGGCTTCGGCCATACGGTGAACGTCTTCACGTTTCTTAACTGCAGTACCTTTGTTTTCTGCAGCATCAGAAAGTTCGTTCGCCAGGCGCAGAGCCATGGATTTATCACCGC > NC_000913/3473474‑3473750 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |