| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_000913 | 4,520,504:1 | +T | 8.2% | intergenic (‑180/+167) | yjhU ← / ← yjhF | KpLE2 phage‑like element; putative DNA‑binding transcriptional regulator YjhU/KpLE2 phage‑like element; putative transporter YjhF |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,520,504 | 1 | . | T | 8.2% | 180.8 / 11.3 | 49 | intergenic (‑180/+167) | yjhU/yjhF | KpLE2 phage‑like element; putative DNA‑binding transcriptional regulator YjhU/KpLE2 phage‑like element; putative transporter YjhF |
| Reads supporting (aligned to +/- strand): ref base . (19/26); new base T (2/2); total (21/28) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 3.09e-01 | |||||||||||
CCTGTTTACCCGGAGAGTTGATGCAGATTGCCAGTGGCATGATTTTATACAGATATTTTATTCTTTTACATGAAATAAACCAGCATACCATTTGAGCGATCGCCCGCTGTTCCCCCATACTGTAAAGC‑CGGAGACATG‑CTCCGGCTTTACAGTATTACTGAGAATACACCCATCAAGCATAATCGAAGGTTCAATATCGCCCCTTTTTGATCGCCAGCGATTCGTCACCGTGCAGACGGTTGCCGTCACTCACTAAATTATGGGGGACAGTGAACAAC > NC_000913/4520367‑4520644 | ccTGTTTACCCGGAGAGTTGATGCAGATTGCCAGTGGCATGATTTTATACAGATATTTTATTCTTTTACATGAAATAAACCAGCATACGATTTGAGCGATCGCCCGCTGTTCCCCCACACTG‑AACGCACGGCGACAtc‑ctccc > 2:4694/1‑142 (MQ=255)ccTGTTTACCCGGAGAGTTGATGCAGATTGCCAGTGGCATGATTTTATACAGATATTTTATTCTTTTACATGAAATAAACCAGCATACCATTTGAGCGATCGCCCGCTGTTCCCCCATACTGTAAAGC‑CGGAGACATG‑CCCCg > 2:686923/1‑143 (MQ=255) gtGTTTACCCGGAGAGTGGAGGCAGGTTTCCACTGGCCTGGGTTTGTGCGGATATTTTATTCTTTTACATGAAATAAACCAGCATACCATTTGAGCGATCGCCCGCTGTTCCCCCATACTGTAAAGC‑CGGAG‑CATGTCTCCgg < 2:280978/142‑1 (MQ=255) cTGTTTACCCGGAGAGTTGATGCAGATTGCCAGTGGCATGATTTTATACAGATATTTTATTCTTTTACATGAAATAAACCAGCATACCATTTGAGCGATCGCCCGCTGTTCCCCCATACTGTAAAGC‑CGGAGACATG‑CTTCgg > 1:457917/1‑143 (MQ=255) cTGTTTACCCGGAGAGTTGATGCAGATTGCCAGTGGCATGATTTTATACAGATATTTTATTCTTTTACATGAAATAAACCAGCATACCATTTGAGCGATCGCCCGCTGTTCCCCCATACTGTAAAGC‑CGGAGACATG‑CTCCgg > 1:435686/1‑143 (MQ=255) tttCCCGGGAGAGTTGATGCAGATTGCCAGTGGCATGATTTTATACAGATATTTTATTCTTTTACATGAAATAAACCAGCATACCATTTGTGCGATCGCCCGCTGTTCCCCCATACTGTAAAGC‑CGGAGACATG‑CTCCGGCtt < 1:510325/143‑1 (MQ=255) tttACCCGGAGAGTTGATGCAGATTGCAAGTGGCACGAGTTTATACAGATATTTTATTCTTTTACATGAAATAAACCAGCATACCATTTGAGCGATCGCCCGCTGTTCCCCCATACTGTAAAGC‑CGGAGACATG‑CTCCGGCtt < 2:357076/143‑1 (MQ=255) tACCCGGAGAGTTGATGCAGATTGCCAGTGGCATGATTTTATACAGATATTTTATTCTTTTACATGAAATAAACCAGCATACCATTTGAGCGATCGCCCGCTGTTCTCCCATACTGTAAAGC‑CGGAGACATG‑CTCCGGCTTTa < 1:527276/143‑1 (MQ=255) tACCCGGAGAGTTGATGCAGATTGCCAGTGGCATGATTTTATACAGATATTTTATTCTTTTACATGAAATAAACCAGCATACCATTTGAGCGATCGCCCGCTGTTCCCCCATACTGTAAAGC‑CGGAGACATG‑CTCCGGCTTTa < 1:532622/143‑1 (MQ=255) ccGGAGAGTTGATGCAGATTGCCAGTGGCATGATTTTATACAGATATTTTATTCTTTTACATGAAATAAACCAGCATACCATTTGAGCGATCGCCCGCTGTTCCCCCATACTGTAAAGC‑CGGAGACATG‑CTCCGGCTTTACAg > 1:428559/1‑143 (MQ=255) ccGGAGAGTTGATGCAGATTGCCAGTGGCATGATTTTATACAGATATTTTATTCTTTTACATGAAATAAACCAGCATACCATTTGAGCGATCGCCCGCTGTTCCCCCATACTGTAAAGC‑CGGAGACATG‑CCCCGGCTTTACAg > 2:763022/1‑143 (MQ=255) cGGAGAGTTGATGCAGATTGCCAGTGGCATGATTTTATACAGATATTTTATTCTTTTACATGAAATAAACCAGCATACCATTTGAGCGATCGCCCGCTGTTCCCCCATACTGTAAAGC‑CGGAGACATG‑CTCCGGCTTTACAGt < 2:717343/143‑1 (MQ=255) ggAGAGTTGATGCAGATTGCCAGTGGCATGATTTTATACAGATATTTTATTCTTTTACATGAAATAAACCAGCATACCATTTGAGCGATCGCCCGCTGTTCCCCCATACTGTAAAGC‑CGGAGACATG‑CTCTGGCTTTACAGTa > 1:246436/1‑143 (MQ=255) gagTTGATGCAGATTGCCAGTGGCATGATTTTAGACAGATATTTTATTCTTTTACATGAAATAAACCAGCATACCATTTGAGCGATCGCCCGCTGTTCCCCCATACTGTAAAGC‑CGGAG‑CATGTCTCCGGCTTTACAGTAtgg < 1:139573/143‑3 (MQ=38) tGATGCATATTGCCAGCGGCATGATTTTATACAGATATTTTATTCTTTTACATGAAATAAACCAGCTTACCATTTGAGCGATCGCCCGCTGTCCCCCCATACTGTAAAGC‑CGGAGACATG‑CTCCGGCTTTACAGTATTACTga < 2:781823/143‑1 (MQ=255) tGCAGATTGCCAGTGGCATGATTTTATACAGATATTTTATTCTTTTACATGAAATAAACCAGCATACCATTTGAGCGATCGCCCGCTGTTCCCCCATACTGTAAAGC‑CGGAGACATG‑CTCCGGCTTTACAGTATTACTGAGaa < 1:125559/143‑1 (MQ=255) gCAGATTGCCAGTGGCATGATTTTATACAGATATTTTATTCTTTTACATGAAATAAACCAGCATACCATTTGAGCGATCGCCCGCTGTTCCCCCATACTGTAAAGC‑CGGAGACATG‑CTCCGGCTTGACAGTATTACTGAGAAt > 2:182209/1‑143 (MQ=255) cAGATTGCCAGTGGCATGATTTTATACAGATATTTTATTCTTTTACATGAAATAAACCAGCATACCATTTGAGCGATCGCCCGCTGTTCCCCCATACTGTAAAGC‑CGGCGACGTG‑CTCCGGCTTTACAGGAGTAGTGAGAATa > 1:398224/1‑143 (MQ=255) aGATTGCCAGTGGCATGATTTTATACAGATATTTTATTCTTTTACATGAAATAAACCAGCATACCATTTGAGCGATCGCCCGCTGTTCCCCCATACTGTAAAGC‑CGGAGACCTC‑CTCCGCCTCTACAGTATTACTCAGAAtcc > 2:342831/1‑141 (MQ=255) gATTGCCAGTGGCATGATTTTATACAGATATTTTATTCTTTTACATGAAATAAACCAGCATACCATTTGAGCGATCGCCCGCTGTTCCCCCATACTGTAAAGC‑CGGAGACATG‑CTCCGGCTTTACAGTATTACTGAGAATaca < 1:51864/143‑1 (MQ=255) aTTGCCAGTGGCATGATTTTATACAGATATTTTATTCTTTTACATGAAATAAACCAGCATACCATTTGAGCGATCGCCCGCTGTTTCCCGCTACTGTAAAGC‑CGGAGACATG‑CTCCGGCTTTACAGTATTACTGAGAATacac > 1:593023/1‑143 (MQ=255) aTTGCCAGTGGCATGATTTTATACAGATATTTTATTCTTTTACATGAAATAAACCAGCATACCATTTGAGCGATCGCCCGCTGTTCCCCCATACTGTAAAGC‑CGGAGACATG‑CTCCGGCTTTACAGTATTACTGAGAATacac > 1:521884/1‑143 (MQ=255) cAGTGGCATGATTTTATACAGATATTTTATTCTTTTACATGAAATAAACCAGCATACCATTTGAGCGATCGCCCGCTGTTCCCCCATACTGTAAAGC‑CGGAGACATG‑CTCCGGCTTTACCGTATTACTGAGACTACACCCATc > 1:439402/1‑143 (MQ=255) tGGCATGATTTTATACAGATATTTTATTCTTTTACATGAAATAAACCAGCATACCATTTGAGCGATCGCCCGCTGTTCCCCCATACTGTAAAGC‑CGGAGACATG‑CTCCGGCTTTACAGTATTACTGAGAATACACCCATCAAg < 1:716554/143‑1 (MQ=255) ataCAGATATTTTATTCTTTTACATGAAATAAACCAGCATACCATTTGAGCGATCGCCCGCTGTTCCCCCATACTGTAAAGC‑CGGAGACATG‑CTCCGGCTTTACAGTATTACTGAGAATACACCCATCAAGCATAATCGAAgg < 1:673497/143‑1 (MQ=255) aGATATTTTATTCTTTTACATGAAATAAACCAGCATACCATTTGAGCGATCGCCCGCTGTTCCCCCATACTGTAAAGC‑CGGAGACATG‑CTCCGGCTTTACAGTATTACTGAGAATACACCCATCAAGCATAATCGAAGGTTCa < 1:323973/143‑1 (MQ=255) aGATATTTTATTCTTTTACATGAAATAAACCAGCATACCATTTGAGCGATCGCCCGCTGTTCCCCAATACTGTAAAGC‑CGGAGACATG‑CTCCGGCTTTACAGTATTACTGAAAATAGACCCATCAAGCATAATCGAAGGTTcc > 2:118903/1‑142 (MQ=255) tttATTCTTTTACATGAAATAAACCCTCGGGGCATTGGAGCGATCGCCCGCTGTGCCCCCATACTGTAAAGC‑CGGAGACATG‑CTCCGGCTTTACAGTATTACTGAGAATACACCCATCAAGCATAATCGAAGGTTCAATATCg < 2:199881/143‑1 (MQ=255) ttttGCATGAAATAAACCAGCATACCATTTGAGCGACCGCCCGCTGTTCCCCCATACTGTAAAGC‑CGCACACATG‑CTCCGGTTTTACAGTATTACTGAGAATACACCCATCAAGCATAATCGAAGGTTCAATATCGCCCCttt < 2:252693/143‑1 (MQ=255) ttttACATAAAATAAACCAGAATAACAAGGGAGCGATCGCCCGCTGTTCCCCCATACTGTAAAGC‑CGGAGACATG‑CTCCGGCTTTACAGTATTACTGGGAATACACCCATCAAGCATAATCGAAGGTTCAATATCGCCCCttt < 1:48009/143‑1 (MQ=255) tgacacGAACTAAGCCGGCATCCCATTTGAGCGGTCGCCCGCTGTTCCCCCATACTGTAAAGC‑CGGAGACATG‑CTCCGGCTTTACAGTATTACTGAGAATACACCCATCAAGCATAATCGAAGGTTCAATATCGCCCCttttt < 2:527039/141‑1 (MQ=255) ctGAAATACACCAGCATCCCATTTGAGCGATCGCCCGCTGTTCCCCCATACTGTAAAGC‑CGGAGACATG‑CTCCGGCTTTACAGTATTACTGAGAATACACCCATCAAACTGTATTTAAGGTTCAATATGGTCCCTTTTTGATc < 2:758625/142‑1 (MQ=255) aaaCCAGCATACCATTTGAGCGATCGCCCGCTGTTCCCCCATACGGTAAAGC‑CGGAGACATG‑CTCCGGCTTTACAGTATTACTGAGAATACACCCATCAAGCATAATCGAAGGTTCAATATCGCCCCTTTTTGATCGCCAGCg < 1:57451/143‑1 (MQ=255) aTTTGAGCGATCGCCCGCTGTTCCCCCATACTGTAAAGC‑CGGAGACATG‑CTCCGGCTTTACAGTATTACTGAGAATACACCCATCAAGCATAATCGAAGGTTCAATATCGCCCCTTTTTGATCGCCAGCGATTCGTCACCGTg < 1:293539/143‑1 (MQ=255) tgtGAGCGACCTGCCGCTGTTCCCCCATACTGTAAAGC‑CGGAGACATG‑CTCCGGCTTTACAGTATTACTGAGAATACACCCATCAAGCATAATCGAAGGTTCAATATCGCCCCTTTTTGATCGCCAGCGATTCGTCACCGTGc < 2:262734/141‑1 (MQ=255) cGCCCGCTGGCCCCCCATACGGTAAAGC‑CGGAGACATG‑CGCCGGCTTTACAGTATTACTGAGAATACACCCATCAAGCTTACTCGAAGGTTTAATATCGCCCCTTTTTGATCGCCAGCGATTCGTCACCGTGCAGACGGTTGc < 1:342831/143‑1 (MQ=255) gCCCGCTGTTCCCCCATACTGTAAAGC‑CGGAGACATG‑CTCCGGCTTTACAGTATTACTGAGAATACACCCATCAAGCATAATCGAAGGTTCAATATCGCCCCTTTTTGATCGCCAGCGATTAGTCACCGTGCGGCCGGGTGcc > 1:625698/1‑143 (MQ=255) cccGCTGTTCCCCCATACTGTAAAGC‑CGGAGACATG‑CTCCGGCTTTACAGTATTACTGAGAATACACCCATCAAGCATAATCGAAGGTTCAATATCGCCCCTTTTTGATCGCCAGCGATTCGTCACCATGCAGACGGTTGCCg < 2:435686/143‑1 (MQ=255) gTTCCCCCATACTGTAAAGC‑CGGAGACATG‑CTCCGGCTTTACAGTATTACTGAGAATACACCCATCAAGCATAATCGAAGGTTCAATATCGCCCCTTTTTGATCGCCAGCGATTCGTCACCGTGCAGACGGTTGCCGtcactc < 1:445826/143‑1 (MQ=255) ttCCCCCCCACTGTAAAGC‑CGGAGACATG‑CTCCGGCTTTACAGTATTACTGAGAATACACCCATCAAGCATAACCGAAGGTTCAATATCGCCCCTTTTTGATCGCCAGCGATTCGTCACCGTGCAGACGGTTGCCGtcactca < 1:264247/143‑1 (MQ=255) ccccATACTGTAAAGC‑CGGAGACATG‑CTCCGGCTTTACAGTATTACTGAGAATACACCCATCAAGCATAATCGAAGGTTCAATATCGCCCCTTTTTGATCGCCAGCGATTCGTCACCGTGCAGACGGTTGCCGTCACTCACTa > 1:63921/1‑143 (MQ=255) ccccATACTGTAAAGC‑CGGAGACATG‑CTCCGGCTTTACAGTATTACTGAGAATACACCCATCAAGCATAATCGAAGGTTCAATATCGCCCCTTTTTGATCGCCAGCGATTCGTCACCGTGCAGACGGGTGCCGTCACTCACTa > 1:516798/1‑143 (MQ=255) tGTAACGC‑CGGAGACATA‑CTCCTGCTTTACAGTATTACTGACAATTCACCCATCAAGCATAATCGAAGGTTCAATATCGCCCCTTTTTGATCGCCAGCGATTCGTCACCGTGCAGACGGTTGCCGTCACTCACTAAATTATgg < 1:221476/143‑1 (MQ=255) tGTAAAGC‑CGGAGACATG‑CTCCGGCTTTACAGTATTACTGAGAAGACACCCATCAAGCATAATCGAAGGTTCACTACCGGCCCTTTTTGATCGCCAGCGATTCGTCACCGTGCAGACGGTTGCCGTCACTCACTAAATTATgg < 1:114715/143‑1 (MQ=255) gTAAAGC‑CGGAGACATG‑CTCCGGCTTTACAGTATTACTGAGAATACACCCATCAAGCATAATCGAAGGTTCAATATCGCCCCCTTTTGATCACCAGCGACTCGTCACCGTTCAGCCGGTTGCCGTCACACACTAAATTAAggc > 2:735048/1‑142 (MQ=255) aGC‑CGGAGACATG‑CTCCGGCTTTACAGTATTACTGAGAATACACCCATCAAGCATAATCGAAGGTTCAATATCGCCCCTTTTCGATCGCCAGCGATTCGTCACCGTGCAGACGGTTGCCGTCACTCACTAAATTATGGGGGAc > 2:242461/1‑143 (MQ=255) aGC‑CGGAG‑CATGTCTCCGGCTTTACAGTATTACTGAGAATACACCCATCAAGCATAATCGAAGGTTCAATATCGCCCCTTTTTGATCGCCAGCGCTTCGTCACCGCGCAGACGGTTGCCGTCACGCACTAACTTAttgcggcc > 2:32875/1‑136 (MQ=255) aGC‑CGGAG‑CATGTCTCCGGCTTTACAGTATTACTGAGAATACACCCATCAAGCATAATCGAAGGTTCAATATCGCCCCTTTTTGATCGCCAGCGATTCGTCACCGTGCAGACGGTTGCCGTCACTCACTAAATTATGGGGGAc > 2:327573/1‑143 (MQ=255) gC‑CGGAGACAGG‑CTCCGGCTTTACAGTATTACCGAGAATGCACCCATCAAGCATAATCGAAGGTTCAAGATCGCCCCTTTTTGATCGCCAGCGATTCGTCACCGTGCAGACGGTTGCCGTCACTCACTAAATTATGGGGGACa < 2:188459/143‑1 (MQ=255) aTG‑CTCCGGCTTTACAGTATTACTGAGAATACACCCATCAAGCATAATCGAAGGGTCAATATCGCCCCTTTTTGATCGCCAGCGATTCGTCACCGTGCACACGGTTCCCGCCACTCACTAAATCCTCGCGGACCCTGaacaac > 1:423710/1‑143 (MQ=255) | CCTGTTTACCCGGAGAGTTGATGCAGATTGCCAGTGGCATGATTTTATACAGATATTTTATTCTTTTACATGAAATAAACCAGCATACCATTTGAGCGATCGCCCGCTGTTCCCCCATACTGTAAAGC‑CGGAGACATG‑CTCCGGCTTTACAGTATTACTGAGAATACACCCATCAAGCATAATCGAAGGTTCAATATCGCCCCTTTTTGATCGCCAGCGATTCGTCACCGTGCAGACGGTTGCCGTCACTCACTAAATTATGGGGGACAGTGAACAAC > NC_000913/4520367‑4520644 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |