| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 4040683 | 45 (1.090) | 8 (0.200) | 4/260 | NT | 14.9% | intergenic (+47/+223) | rrfA/mobB | 5S ribosomal RNA/molybdopterin‑guanine dinucleotide biosynthesis adaptor protein |
| ? | NC_000913 | = 4213162 | 47 (1.150) | intergenic (+3/‑72) | rrfE/yjaA | 5S ribosomal RNA/stress response protein | |||||
TCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCTCATGCGAGAGTAGGGAACTGCCAGGCATCAAATAAAACGAAAGGCTCAGTCGGAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGCTCTCCTGAGTAGGACAAATCCGCCGGGAGCGGATTTGAACGTTGCGAAGCAACGGCCCGGAGGGTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGCATCAAATTAAGCAGAAGGCCATC > NC_000913/4040541‑4040825 | ccccaCCTGTCGCCAGGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCTCATGCGAGAGTAGGGAACTGCCAGGCATCAAATAAAACGAAAGGCTCAGTCGGAAGACTGGGCCTTTCGTTTTAT < 2:88316‑M1/142‑1 (MQ=255) ccACCTGACCCCATGCCGAACTCAGAAGTGAAACCCCGTAGCGCCGATGGCAGCGTGCGGTCTCCTCCTGCGAGAGTCGGGAACTGCCAGGTATCAAATAAAACGAAAGGCTCAGTCGGAAGACTGGGCCTTTCGTTTTATcc > 2:812541/1‑142 (MQ=11) ccTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCTCGTGCGAGAGTAGTGAACTGCCAGGCATCAAATAAAACGAAAGGCTCAGTCGGAAGACTGGGCCTTTCGTTTTATCtgtt < 2:54579/143‑1 (MQ=25) ccTCACCCCATGCCGCACTCACAAGTGAAACGCCGTAGCGCAGACGGTGGTGTGGGGTCTCCTCGGGCGAGCGTAGGGAACTGCCAGGCATCAAATAAAACGCAAGGCTCAGTCGGAAGACTGGGCCTTTCGTTTTATCtgtt < 1:111875/143‑1 (MQ=11) cTGCCCGCAGGCCGAACTCAGAAGTGAAACGCGGGAGCGCCGATGGTAGTGTGGGGTCTCCTCAGGCGAGAGTAGGGAACTGCCAGGCATCAAATAAAACGAAAGGCTCAGTCGGAAGACTGGGCCTTTCGTTTTATCtgttg < 2:614067/143‑1 (MQ=11) ccATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCTCATGCGAGAGTAGGGAACTGCCAGGCATCAAATAAAACGAAAGGCTCAGTCGGAAGACTGGGCCTTCCGGTCTGTCTCTTGTTGGTc > 2:713218/1‑143 (MQ=11) cATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGGAGTGTGGGGTCTCCTCATGCGAGAGTAGGGACCTGCCAGGCATCAAATAAAACGAAAGGCTCAGTCGGAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCg < 1:156597/143‑1 (MQ=25) cGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCTCATGCGAGAGTAGGGAACTGCCAGGCATCAAATAAAACGAAAGGCTCAGTCGGAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGaa > 1:53806/1‑143 (MQ=35) gAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCTCATGCGAGAGTAGGGAACTGCCAGGCATCAAATAAAACGAAAGGCTCAGTCGGAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAAc < 1:569076/143‑1 (MQ=35) aGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCTCATGCGAGAGTAGGGAACTGCCAGGCATCAAATAAAACGAAAGGCTCAGTCGGAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGGGAACGCtctc > 1:145226/1‑143 (MQ=25) gcgAACCGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCTCATGCGAGAGTAGGGAACTGCCAGGCATCAAATAAAACGAAAGGCTCAGTCGGAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGCTCTCCTGa < 1:414195/141‑1 (MQ=25) gTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCTCATGCGAGAGTAGGGAACTGCCAGGCATCAAATAAAACGAAAGGCTCAGTCGGAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGCTCTCCTGa < 1:276175/143‑1 (MQ=34) tgcaaCGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCTCATGCGAGAGTAGGGAACTGCCAGGCATCAAATAAAACGAAAGGCTCAGTCGGAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGCTCTCCTGAg < 1:98247/140‑1 (MQ=21) tGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCTCATGCGAGAGTAGGGAACTGCCAGGCATCAAATAAACCGAAAGGCTCAGTCGGAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGCTCTCCTGAg > 1:186031/1‑143 (MQ=25) tGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCTCATGCGAGAGTAGGGAACTGCCAGGCATCAAATAAAACGAAAGGCTCAGTCGGAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAAGGCTCTCGTGAg > 2:435098/1‑143 (MQ=21) aaaCGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCTCATGCGAGAGTAGGGAACTGCCAGGCATCAAATAAAACGAAAGGCTCAGTCGGAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGCTCTCCTGAGTa > 1:499505/1‑143 (MQ=35) aaCGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCTCATGCGAGAGTAGGGAACTGCCAGGCATCAAATAAAACGAAAGGCTCAGTCGGAAGACTGGGCCTTTCGTTTTATGTGTTGTTTGTCGGTGAACGCTCTCCTGAGtcg > 2:377685/1‑141 (MQ=25) aaCGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCTCATGCGAGAGTAGGGAACTGCCAGGCATCAAATAAAACGAAAGGCTCAGTCGGAAGACTGGGCCTTTCGCTTTATCTGTTGTTTGTCGGTGAACGCTCTCCTgcggag > 1:323737/1‑138 (MQ=19) aaCGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCACATGCGAGAGTAGGGAACTGCCAGGCATACAAGACAACGAAAGGCTCAGTCGGAAGAGTGGGACTTTCGATGTATCTGGTGTTTGTCGGGGAACGCTCACCTgtggag > 2:1976/1‑138 (MQ=11) cGTGGCGCCGATGGTCGTGTGGCGTCTCCGCATGCGAGAGTTGGGAACTGCCAGGCATCAAATAAAACGAAAGGCTCAGTCGGAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGCTCTCCTGAGTAGGACaa < 2:516215/143‑1 (MQ=11) cGATGGTAGTGTGGGGTCTCCGCATGCGAGAGTAGGGAACTGCCAGGCATCAAATAAAACGAAAGGCTCAGTCGGAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGCTCTCCTGAGTAGGACAAATccgccg < 1:249458/143‑1 (MQ=17) aGTGTGGGGTCTCCTCATGCGAGAGTAGGGAACTGCCAGGCATCAAATAAAACGAAAGGCTCAGTCGGAAGCCTGGGACTGTCGCACTCACTGGGGGGTGTCGGTGACCGCTCTCCTGCGTAGGACAAATCGGCCGGGAGCgg > 2:170571/1‑143 (MQ=11) aGTGTGGGGTCTCCTCATGCGAGAGTAGGGAACTGCCAGGCATCAAATAAAACGAAAGGCTCAGTCGGAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGCTCTCCTGAGTAGGACAAATCCGCCGGGAGCgg > 2:165642/1‑143 (MQ=35) ggcctcctcATGCGAGAGTAGGGAACTGCCAGGCATCAAATAAAACGAAAGGCTCAGTCGGAACCATGTGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGCTCTCCTGAGTAGGACAAATCCGCCGGGAGCGGATTTGaa < 1:377685/140‑1 (MQ=11) cctcATGCGAGAGTAGGGAACTGCCAGGCATCAAATAAAACGAAAGGCTCAGTCGGAAGCCTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGCTCTCCTGAGTAGGACAAATCCGCCGGGAGCGGATTTGAACGTTg < 1:291351/143‑1 (MQ=21) ctcATGCGAGAGTAGGGAACTGCCAGGCATCAAATAAAACGAAAGGCTCAGTCGGAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGCTCTCCTGAGTAGGACAAATCCGCCGGGGGCGGATTTGACCGTTGc > 1:530484/1‑143 (MQ=21) tcATGCGAGAGTAGGGAACTGCCAGGCATCAAATAAAACGAAAGGCTCAGTCGGACGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGCTCTCCTGAGAAGGACAAATCCGCCGGGAGCGGATTTGAACGTGGcc > 1:482866/1‑142 (MQ=12) tcATGCGAGAGTAGGGAACTGCCAGGCATCAAATAAAACGAAAGGCTCAGTCGGAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGCTCTCCTGAGTAGGACAAATCCGCCGGGAGCGGATTTGAACGTTGCg > 1:388360/1‑143 (MQ=33) tcATGCGAGAGTAGGGAACTACCAGGCATCAAATAAAACGAAAGGCTCAGTCGGAAGACTGGGCCTTTCGTTTTATCTGTTGCTTGTCGGTGGACGCTCTCCTGAGTAGGACAAATCCGCCGGAAGCGGATTAGAACgctacg > 2:513389/1‑138 (MQ=11) tGCGAGAGTAGGGAACTGCCAGGCATCAAATAAAACGAAAGGCTCAGTCGGAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGCTCTCCTGAGTAGGACAAATCCGCCGGGAGCGGATTTGAACGTTGCGAAg < 1:745452/143‑1 (MQ=32) agTAGGGAACTGCCAGGCATCAAATAAAACGAAAGGCTCAGTCGGAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGGCGGTGAACGCTCTCCTGAGTAGGACAAATCCGCCGGGAGCGGATTGGAACGTTGCGAAGCAACgg > 2:519024/1‑143 (MQ=17) tAGGGAACTGCCAGGCATCAAATAAAACGAAAGGCTCAGTCGGAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGCTCTCCTGAGTAGGACAAATCCGCCGGGAGCGGATTTGAACGCTGCGAAGCAACGGcc > 2:173118/1‑143 (MQ=17) tAGGGAACTGCCAGGCATCAAATAAAACGAAAGGCTCAGTCGGAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGCTCTCCTGAGTAGGACAAATCCGCCGGGAGCGGAGTTGAACGTGGCGAAGCAACGGcc > 2:104280/1‑143 (MQ=17) ggAACTGCCAGGCATCAAATAAAACGACAGGCTCAGTCGGAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGCTCTCCTGAGTAGGACAAATCCGCCGGGAGCGGATTTGAACGTTGCGAAGCAACGGCCCgg < 1:24409/143‑1 (MQ=17) tGCCAGGCATCAAATAAAACGAAAGGCTCAGTCGGAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGCTCTCCTGAGTAGGACAAATCCGCCGGGAGCGGGTTTGAACGTTGCGAAGCAGCGGCCCGGAGGGt > 1:304584/1‑143 (MQ=17) tGCCAGGCATCAAATAAAACGAAAGGCTCAGTCGGAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGCTCTCCTGAGCAGGACAAATCCGCCGGGAGCGGATTTGAACGGTGCGACGCAACGGCCCGGAgggc > 2:814715/1‑142 (MQ=12) gaGGCATCAGACAAAACGAGAGGCTCAGTCGGAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGCTCTCCTGAGTAGGACAAATCCGCCGGGAGCGGATTTGAACGTTGCGAAGCAACGGCCCGGAGGGTGGc < 2:633492/142‑1 (MQ=12) ggCATCAAATAAAACGAAAGGCTCAGTCGGAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGCTCTCCTGAGTAGGACAAATCCGCCGGGAGCGGATTTGAACGTTGCGAAGCAACGGCCCGGAGGGTGGCgg < 1:165642/143‑1 (MQ=32) ggCAGCAAATAAAACGAAAGGCTCAGGCGGAAGACTGGGCCGTTCGTGTTATCTGTTGTTTGTCGGTGAACGCGCTACTGAGTAGGACAAATCCGCCGGGAGCGGATTTGAACGTTGCGAAGCAACGGCCCGGAGGGTGGCgg < 1:170571/143‑1 (MQ=11) gCATCAAATAAGACGGGAGGCGCAGTCCGACGCGACGCCCTTGTGTTTTATCTGTTGTCTGTCGGTGAACGCTCGCCTGAGTAGGACAAATCCGCCGGGAGCGGATTTGAACGTTGCGAAGCAACGGCCCGGAGGGTGGCggg < 2:167075/143‑1 (MQ=11) cATCAAATAAAACGAAAGGCTCAGTCGGAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGCTCTCCTGAGTAGGACAAATCCGCCGGGAGCGGATTTGAACGTTGCGAAGCAACGGCCCGGAGGGTGGCGGGc > 1:808013/1‑143 (MQ=32) cATCAAATAAAACGAAAGGCTCAGTCGGAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGCTCTCCTGAGTAGGACAAATCCGCCGGGAGCGGATTTGAACGTTGCGAAGCAACGGCCCGGAGGGTGGCGGGc > 1:804658/1‑143 (MQ=32) gtccactAAACCGATAGGTTGAGTCGGAAGAAGGGGCCTTTCGTTTTATCTGTTGTGTGTCGGTGAACGCTCTCCTGAGTAGGACAAATCCGCCGGGAGCGGATTTGAACGTTGCGAAGCAACGGCCCGGAGGGTGGCGGGCa < 2:197113/137‑1 (MQ=11) aTCAAATAAAACGAAAGGCTCAGTCGGAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGCTCTCCTGAGTAGGACAAATCCGCCGGGAGCGGATTTGAACGTTGCGAAGCAACGGCCCGGAGGGTGGCGGGCa < 1:751537/143‑1 (MQ=32) tCAAATAAAACGAAAGGCTCAGTCGGAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGCTCTCCTGAGTAGGACAAATCCGCCGGGAGCGGATTTGAACGTTGCGAAGCAACGGCCCGGAGGGTGGCGGGCAg > 2:713489/1‑143 (MQ=32) aaaTAAAACGAAAGGCTCAGTCGGAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGCTCTCCTGAGTAGGACAAATCCGCCGGGAGCGGATTTGAACGTTGCGAAGCAACGGACCGGAGGGTGGCGAGCAAGa > 1:442658/1‑143 (MQ=12) aaCGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTATttgatgcctggcagttccctactctcgcatggggagaccccacactaccatcggcgctacggcgtttcacttctgagttcggcatggggtcaggtgggaccac > 1:396037‑M1/1‑40 (MQ=255) aaGGCTCAGTCGGAAGACTGGGCCTTTCGTTTTATttgatgcctggcagttccctactctcgcatgaggagaccccacactaccaccggcgctacggcgtttcagttctgagttcggcatggggtcaggtgggaccaccgcgc > 2:28725‑M1/1‑35 (MQ=255) aaGGCTCAGTCGAAAGACTGGGCCTTTCGGTTTCTttgcagcctggcagttccctactctcgcatggggagaccccacactaccaacggcgctacgccgagtcacttctgatttcggcacggggtgaggtggtacccccgcgc > 2:398782‑M1/1‑35 (MQ=255) aGGCTCAGTCGGAAGACTGGGCCTTTTGTTTTATttgatgtctggcagttccctactctcgcatggggcgaccccacactaccatcggcgctacggcgtttcacttctgagttcggcatggggtcaggtgggacgaccgcgct > 1:156351‑M1/1‑34 (MQ=255) aGGCTCAGTCGGAAGACTGGGCCTTTTGTTTTATttgatgtctggcagttccctactctcgcatggggagaccccacactaccatcggcgctacggcgtttcacttctgagttcggcatggggtcaggtgggaccaccgcgct > 1:109498‑M1/1‑34 (MQ=255) aGGCTCAGTCGGAAGACTGGGCCTTTCGTTTTATttgatgcctggcagttccctactctcgcatgaggagaccccacactaccatcggcgctacggcgtttcacttctgagttcggcatggggtcaggtgggaccaccgcgct > 1:211071‑M1/1‑34 (MQ=255) ggCTCAGTCGAAAGACTGGGCCTTTCGTTTTATttgatgcctggcagttccctactctcgcatggggagaccccacactaccatcggcgctacggcgtttcacttctgagttcggcatggggtcaggtgggaccaccgcgcta > 2:672929‑M1/1‑33 (MQ=255) gCTCAGTCGGAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGCTCTCCTGAGTAGGACAAATCCGCCGGGAGCGGATTTGAACGTTGCGAAGCAACGGCCCGGAGGGTGGCGGGCAGGACGCCCGCCATAAAc > 2:468173/1‑143 (MQ=32) aGTCGGAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGCTCTCCTGAGTAGGACAAATCCGCCGGGAGCGGATTTGAACGTTGCGAAGCAACGGCCCGGAGGGTGGCGGGCAGGACGCCCGCCATAAACTGcc > 2:340501/1‑143 (MQ=32) gAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGCTCTCCTGAGTAGGACAAATCCGCCGGGAGCGGATTTGAACGTTGCGAAGCAACGGCCCGGAGGGTGGCGGGCAGGACGCCCGCCAGAAACTGCCAGGCa > 2:527258/1‑143 (MQ=11) ccTTTCGTTTTATttgatgcctggcagttccctactctcgcatggggagaccccacactaccatcggcgctacggcgtttcacttctgagttcggcatggggtcaggtgggaccaccgcgctactgccgccaggcagattctg > 2:793518‑M1/1‑13 (MQ=255) atttttagttgctgcctggcagtgccctactctcgcatggggagaccccacactaccatcggcgctacggcgtttcccttctgagttcggcatggggtcaggtgggaccaccgcgctactgccgccaggcaaattctgtttta < 2:276093‑M1/141‑136 (MQ=255) ttttATttgatgcctggcagttccctactctcgcatggggagaccccacactaccatcggcgctacggcgtttcacttctgagttcggcatggggtcaggtgggaccaccgcgctactgccgccaggcaaattctgttttatc > 2:22557‑M1/1‑6 (MQ=255) tttATttgatgcctggcagttccctactctcgcatggggagaccccacactaccatcggcgctacggcgtttcacttctgagttcgggctggggtaaggtgggaccaccgcgctcatgacgccagccgaattctgttttctca > 2:73293‑M1/1‑5 (MQ=255) aTttgatgcctggcagttccctactctcgcatggggagaccccacactgccaccggagatccggtgtttcacttctgagttcggcctggggtcaggtgtgaccgccgcgctactgccgccaggcaaattctgttttatcagac < 1:727786‑M1/143‑142 (MQ=255) tttgatgcctggcagttccctactctcgcatggggagaccccacactaccatcggcgctacggcgtttcacttctgagttcggcatggggtcaggtgggaccaccgcgctactgccgccaggcaaattctgttttatcagacc > 1:626978‑M1/1‑1 (MQ=255) tttgatgcctggcagctccctactctcgcatgcggagaccccacactaccatcggcgctacggcgtttcactgctgagttcggcatggggtcaggtgggacaaccgcgccactgccgccaggcaacaactgttgtaccagacc > 2:800002‑M1/1‑1 (MQ=255) | TCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCTCATGCGAGAGTAGGGAACTGCCAGGCATCAAATAAAACGAAAGGCTCAGTCGGAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGCTCTCCTGAGTAGGACAAATCCGCCGGGAGCGGATTTGAACGTTGCGAAGCAACGGCCCGGAGGGTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGCATCAAATTAAGCAGAAGGCCATC > NC_000913/4040541‑4040825 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |