New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 2321967	33 (0.800)	4 (0.100)	4/252	NT	11.2%	coding (102/1386 nt)	atoC	DNA‑binding transcriptional activator/ornithine decarboxylase inhibitor AtoC
	?	NC_000913	= 2321976	32 (0.810)					coding (111/1386 nt)	atoC	DNA‑binding transcriptional activator/ornithine decarboxylase inhibitor AtoC

TACCGATCAACCCGCAGGGAAATCAGACTGTATGACTGCTATTAATCGCATCCTTATTGTGGATGATGAAGATAATGTTCGCCGTATGCT‑GAGCACCGCTTTTGCACTACAAGGATTCGAAACACATTGTGCGAACAACGGACGCACAGCATTACACCTGTTTGCCGATATTCACCCTGATGTGGTGTTGATGGATATCCGCATGCCAGAGATGGACGGCATCAAGGCACTAAAGGAGATGCGCAGCCATGAGACCCGGACACCCGTTATTCT  >  NC_000913/2321835‑2322107                                                                                                                                               |                                                                                                                                    tACCGATCAACCCGCAGGGAAATCAGACTGTATGACTGCTATTAATCGCATCCTTATTGTGGATGATGAAGATAATGTTCGCCGTATGCT‑GAGCACCGCTTTTGCACTACAAGGATTCGAAACACATTGTGCGAACAACGGAc                                                                                                                                    >  2:797596‑M2/1‑142 (MQ=255)   ccGATCAACCCGCAGGGAAATCAGACTGTATGGCTGCTATTAATCGCATCCTTATTGTGGATGATGAAGATAATGTTCGCCGTATGCT‑GAGTAACGCTTTTGAAATACAAGGATTCGAAAACTATCGAGCGAACAACGAAcga                                                                                                                                  <  2:426184‑M2/143‑4 (MQ=255)    cGATCAACCCGCAGGGAAATCAGACTGTATGACTGCTATTAATCGCATCCTTATTGTGGATGATGAAGATAATGTTCGCCGTATGCT‑GAGCACCGCTTTTGCACTACAAGGATTCGAAACACATTCTCAGAACAACGGAcccc                                                                                                                                 <  2:112056‑M2/143‑5 (MQ=255)     gATCAACCCGCAGGGAAATCAGACTGTATGACTGCTATTAATCGCATCCTTATTGTGGATGATGAAGATAATGTTCGCCGTATGCT‑GAGCACCGCTTTTGCACTACAAGGATTCGAAACACATTGTGCGAACAACGGAcgcac                                                                                                                                <  1:793385‑M2/143‑6 (MQ=255)       tCAACCCGCAGGGAAGTCAGACTGTATGACTGCTATTAATCGCAGCCTTATTGTGGATGATGAAGATAATGTTCGCCGTATGCT‑GAGCACCGCTTTTGCACTACAAGGATTCGAAACACATTGTGCGAACAACGGACGCACAg                                                                                                                              <  2:735409/143‑1 (MQ=255)         aaCCCGCAGGGAAATCAGACTGTATGACTGCTATTAATCGCATCCTTATTGTGGATGATGAAGATAATGTTCGCCGTATGCT‑GAGCACCGCTTTTGCACTACAAGGATTCGAAACACATTGTGCGAACAACGGACGCACAGCa                                                                                                                            >  1:409130/1‑143 (MQ=255)            ccGCAGGGAAATCAGACTGTATGACTGCTATTAATCGCATCCTTATTGTGGATGATGAAGATAATGTTCGCCGTATGCT‑GAGCACCGCTTTTGCACTACAAGGATTCGAAACACATTGTGCGAACAACGGACGCACAGCATTa                                                                                                                         >  1:204047/1‑143 (MQ=255)            ccGCAGGGAAATCAGACTGTATGACTGCTATTAATCGCATCCTTATTGTGGATGATGAAGATAATGTTCGCCGTATGCT‑GAGCACCGCTTTTGCACTACAAGGATTCGAAACACATTGTGCGAACAACGGACGCACAGCATTa                                                                                                                         <  1:712264/143‑1 (MQ=255)              gCAGGGAAATCAGACTGTATGACTGCTATTAATCGCATCCTTATTGTGGATGATGAAGATAATGTTCGCCGTATGCT‑GAGCACCGCTTTTGCACTACAAGGATTCGAAACACATTGTGCGAACAACGGACGCACAGCATTaca                                                                                                                       <  1:133749/143‑1 (MQ=255)                 gggAAATCAGACTGGATGACTGCTATTAATCGCATCCTTATTGTGGATGATGAAGATAATGTTCGCCGTATGCT‑GAGCACCGCTTTTGCACTACAAGGATTCGAAACACATTGTGCGAACAACGGACGCACAGCATTACACCt                                                                                                                    <  1:324659/143‑1 (MQ=255)                  ggAAATCAGACTGTATGACTGCTATTAATCGCATCCTTATTGTGGCTGATGAAGATAATGTTCGCCGTATGCT‑GAGCACCGCTTTTGCACTACAAGGATGCGAAACACATTGTGCGAACAACGGACGCACCGCATTACACCTg                                                                                                                   >  1:182960/1‑143 (MQ=255)                              gTATGACTGCTATTAATCGCATCCTTATTGTGGATGATGAAGATAACGTT‑TAAACATCCTAGTGCACCGCTTTTGCACTACAAGGATTCGAAACACATTGTGCGAACAACGGACGCACAGCATTACACCTGTTTGCCGATAtt                                                                                                       <  1:184549/143‑1 (MQ=255)                               tATGACTGCTATTAATCGCATCCTTACTCTGGATGATGAAGATAATGTTCGCCGTATGCT‑GAGCACCGCTTTTGCACTACAAGGATCCGAAACACATTGTGCGCACAACGGACGCACAGCATTAAACCTCTTTGCCGATATTc                                                                                                      >  2:777262/1‑143 (MQ=255)                                 cgccTGCTCTTACGCGCATCCTCATTGTGGCTGATGAACACAATGTTCTCCCTACGCT‑GAGCACCGCTTTTGCACTACAAGGATTCGAAACACATTGTGCGAACAACGGACGCACAGCATTACACCTGTTTGCCGATATTCAc                                                                                                    <  1:183787/140‑1 (MQ=255)                                      gCTATTAATCGCATCCTTATTGTGGATGATGAAGATAATGTTCGCCGTATGCT‑GAGCACCGCTTTTGCACTACAAGGATTCGAAACACATTGTGCGAACAACGGAAGCGCCGCTTTGCGCCTGTTTGCCGATATTCACCCTGa                                                                                               >  1:632140/1‑143 (MQ=255)                                                  aTCCTGATTGTGGATGATGAAGATAATGTTCGCCGTATGCT‑GAGCACCGCTTTTGCACTACAAGGATTCGAAACACATTGTGCGAACAACGGACGCACAGCATTACACCTGTTTGCCGATATTCACCCTGATGTGGTGTTGAt                                                                                   <  2:635334/143‑1 (MQ=255)                                                   tCCTTATTGGACATGATGAAGATGATGTTCGCCGTATGCT‑GAGCACCGCTTTTGCACTACAAGGATTCGAAACACATTGTGCGAACAACGGACGCACAGCATTACACCTGTTTGCCGATATTCACCCTGATGTGGTGTTGATg                                                                                  <  2:382986/143‑1 (MQ=255)                                                    ccTTATTGTGGATGATGAAGATAATGCTCGCCGTATGCT‑GAGCACCGCTTTTGCACTACAAGGATTCGAAACACATTGTGCGAACAACGGACGCACAGCATTACACCTGTTTGCCGATATTCACCCTGATGTGGTGTTGATgg                                                                                 <  2:739175/143‑1 (MQ=255)                                                      ttAGTGTGGATGATGAAGATAATGTTCGCCGTATGCT‑GAGCACCGCTTTTGCACTACAAGGATTCGAAACACATTGTGCGAACAACGGACGCACAGCATTACACCTGTTTGCCGATATTCACCCCGATGTGGTGTTGATGGat                                                                               >  2:265535/1‑143 (MQ=255)                                                         ttGTGGATGATGAAGATAATGTTCGCCGTATGCT‑GAGCACCGCTTTTGCACTACAAGGATTCGAAACACATTGTGCGAACAACGGACGCACAGCATTACACCTGTTTGCCGATATTCACCCGGATGTGGTGTTGATGGATATc                                                                            >  2:287566/1‑143 (MQ=255)                                                          tgtgtttgattaAGATAATGTGCGCCGTATGCT‑GAGCACCGCGGTTGCACTACAAGGATGCGAAACACATTGTGCGAACAACGGACGCACAGCATTACACCTGTTTGCCGATATTCACCCTGATGTGGTGTTGATGGATATcc                                                                           <  1:476473/137‑1 (MQ=255)                                                           gtgGATGATGAAGATAATGTTCGCCGTATGCT‑GAGCACCGCTTTTGCACTACAAGGATTCGAAACACATTGTGCGAACAACGGACGCACAGCATTACACCTGTTTGCCGATATTCACCCTGATGTGGTGTTGATGGATATCCg                                                                          >  2:634965/1‑143 (MQ=255)                                                                         tAATGTTCGCCGTATGCT‑GAGCACCGCTTTTGCACTACAAGGATTCGAAACACATTGTGCGAACAACGGACGCACAGCATTACACCTGTTTGCCGATATTCAGCCTGATGGGGCGTTGATGGATATCCGCATGCCAGAGATgg                                                            >  1:552287/1‑143 (MQ=255)                                                                          aaTGTTCGCTGTATGCG‑GAGCACCGCACTTGCACGAGAAGGATTCGAAACACATTGTGCGAACAACGGCCGCACAGCATTACACCTGTTTGCCGATATTCACCCTGATGTGGTGTTGATGGATATCCGCATGCCAGAGATGGa                                                           <  1:361328/143‑1 (MQ=255)                                                                                    gTATGCT‑GAGCACCGGTGGTGCAGTACAACGATTCGAAACGCATTGTGCGAACAAGGGGCGCTCGGCATGCCACCTGTTTGCCGATATTCAGCCTGATGTGGTGTTGATGGATATCCGTATGCCAGAGATGGACGGCATCAAg                                                 <  2:570735/143‑1 (MQ=255)                                                                                                aCCGCTTTTGCACTACAAGGATTCGAAACACATTGTGCGAACAACGGAcgcacaatgtgtttcgaatccttgtagtgcaaaagcggtgctcagcatacggcgaacattatcttcatcatccacaataaggatgcgatt                                           >  2:416842‑M2/1‑48 (MQ=255)                                                                                                aCCGCTTTTGCACTACAAGGATTCGAAACACATTGTGCGAACAACGGAcgcacaatgtgtttcgaatccttgtagtgcaaaagcggtgctcagcatacggcgaacattatcttcatcatccacaataaggatgcgatt                                           <  1:416842‑M2/138‑91 (MQ=255)                                                                                                 ccGCTTTTGCACTACAAGGATTCGAAACACTTTGTGCGAACAACGGACGTACAGCATTACACCTGTTTACCGATATTCACCCTGATGTGGTGTTGATGGATATCCGCATGCCAGAGATGGACGGCATCAAGGCACTAAAGgag                                     <  1:426884/143‑1 (MQ=255)                                                                                                 ccGCTTGTGCACTACAAGGATTCGAAACACATTGTTCGGACAACGGACGCACAGCATTACACCTGTTTGCCGATATTCACCCTGATGTGGTGTTGATGGATATCCGCATGCCAGAGATGGACGGCATCAAGGCACTAAAGgag                                     <  1:791647/143‑1 (MQ=255)                                                                                                   gCTTTTGCACTGCAATGATTCGAAACACATTGTGCGAACAACGGACGCACAGCATTACACCTGTTTGCCGATATTCACCCTGATGTGGTGTTGATGGATATCCGCATGCCAGAGATGGACGGCATCAAGGCACTAAAGGAGAt                                   <  2:679669/143‑1 (MQ=255)                                                                                                             tACAAGGATTCGAAACACATTGTGCGAACAACGGACGCACAGCATTACACCTGTTTGCCGATATTCACCCTGATGTGGTGTTGATGGATATCCGCATGCCAGAGATGGACGGCATCAAGGCACTAAAGGAGATGCGCAGCCAt                         >  1:723743/1‑143 (MQ=255)                                                                                                             tACAAGGATTCGAAACACATTGTGCGAACAACGGACGCACAGCATTACACATGTTTGCCGATATTCACCCTGATGTGGTGTTGATGGATACCCGCATGCCAGAGATGAACGGCGTCAAGGCACTGAAGGAGATGCGCAGCCac                         >  2:298756/1‑142 (MQ=255)                                                                                                                aaGGATTCGAAACACATTGTGCGAACAACGGACGCACAGCATTACACCTGTTTGCCGATATTCACCCTGATGTGGTGTTGATGGATATCCGCATGCCAGAGATGGACGGCATCAAGGCACTAAAGGAGATGCGCAGCCATgag                      >  1:415170/1‑143 (MQ=255)                                                                                                                      tCGAAACACATTGTGCGAACAACGGACGCACAGCATTACACCTGTTTGCCGATATTCACCCTGATGTGGTGTTGATGGATATCCGCATGCCAGAGATGGACGGCATCAAGGCACTAAAGGAGATGCGCAGCCATGAGACCCgg                >  1:558472/1‑143 (MQ=255)                                                                                                                        gAAACACATTGTGCGAACAACGGACGCACAGCATTACACCTGTTTGCCGATATTCACCCTGATGTGGTGTTGATGGATATCCGCATGCCATAGATGGACGGTATCAAAAAAGTGAAGGAGCTGCGCAACCATGAGACTCTGac              >  2:357813/1‑143 (MQ=255)                                                                                                                        gAAACACATTGTGCGAACAACGGACGCACAGCATTACACCTGTTTGCCGATATTCACCCTGATGTGGTGTTGATGGATATCCGCATGCCAGAGATGGACGGCATCAAGGCACTAAAGGAGATGCGCAGCCACGAGACCCGGac              >  2:231909/1‑143 (MQ=255)                                                                                                                        gAAACACATTGTGCGAACAACGGACGCACAGCATTACACCTGTTTGCCGATATTCACCCTGATGTGGTGTTGATGGATATCCGCATGCAAGAGATGGACGGCATTAAGGCGATCACGTGGAGGCGCAGCCATGAGACCCGGac              >  1:508231/1‑143 (MQ=255)                                                                                                                         aaaCACATTGTGCGAACAACGGACGCACAGCATTACACCTGTTTGCCGATATTCACCCTGATGTGGTGTTGATGGATATCCGCATGCCAGAGATGGACGGCATCAAGGCACTAAAGGAGATGCGCAGCCATGAGACCCGGaca             >  1:565350/1‑143 (MQ=255)                                                                                                                            cacaTTGTGCGAACAACGGACGAACAGCATTACACCTGTTTGCCGATATTCACCCTGATGTGGTGTTGATGGACCCACGCACTCCAGAGATGGACGGCATCAAGGCACTAAAGGAGATGCGCAGCCATGAGACCCGGACAccc          <  1:732217/143‑1 (MQ=255)                                                                                                                              caTTGTGCGAACAACGGAcgcacaatgtgtttcgaatccttgtagtgcaaaagcggtgctcagcatacggcgaacattatcttcatcatccacaataaggatgcgattaatagcagtcatacagtctgatttccctgcgggtt        <  1:782017‑M2/143‑126 (MQ=255)                                                                                                                                ttGTGCGAACAACGGAcgcacaatgtgtttcgaatccttgtagtgcaaaagcggtgctcagcatacggcgaacattatcttcatcatccacaataaggatgcgattaatagcagtcatacagtctgatttccctgcgggttgc      <  1:202784‑M2/143‑128 (MQ=255)                                                                                                                                    gCGAACAACGGACGCACAGCATTACACCTGTTTGCCGATATTCACCCTGATGTGGTGTTGATGGATAACCGCATGCCAGAGATGGACGGCATCAAGACACTACAGGCGATGCGCAGCCAGCAAACCCAGACACCCGTAAttat  >  2:128667/1‑141 (MQ=255)                                                                                                                                               |                                                                                                                                    TACCGATCAACCCGCAGGGAAATCAGACTGTATGACTGCTATTAATCGCATCCTTATTGTGGATGATGAAGATAATGTTCGCCGTATGCT‑GAGCACCGCTTTTGCACTACAAGGATTCGAAACACATTGTGCGAACAACGGACGCACAGCATTACACCTGTTTGCCGATATTCACCCTGATGTGGTGTTGATGGATATCCGCATGCCAGAGATGGACGGCATCAAGGCACTAAAGGAGATGCGCAGCCATGAGACCCGGACACCCGTTATTCT  >  NC_000913/2321835‑2322107

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.