| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_000913 | 9,908 | G→T | 10.6% | intergenic (+15/+20) | mog → / ← satP | molybdopterin adenylyltransferase/acetate/succinate:H(+) symporter |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 9,908 | 0 | G | T | 10.6% | 124.7 / 6.2 | 56 | intergenic (+15/+20) | mog/satP | molybdopterin adenylyltransferase/acetate/succinate:H(+) symporter |
| Reads supporting (aligned to +/- strand): ref base G (25/25); new base T (4/2); total (29/27) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 6.71e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.98e-01 | |||||||||||
GTACACGGTATTTTTGCCAGCGTACCGTACTGCATTCAGTTGCTGGAAGGGCCATACGTTGAAACGGCACCGGAAGTGGTTGCAGCATTCAGACCGAAGAGTGCAAGACGCGACGTTAGCGAATAAAAAAATCCCCCCGAGCGGGGGGATCTCAAAACAATTAGTGGGATTCACCAATCGGCAGAACGGTGCGACCAAACTGCTCGTTCAGTACTTCACCCATCGCCAGATAGATTGCGCTGGCACCGCAGATCAGCCCAATCCAGCCGGCAAAGTGGA > NC_000913/9768‑10046 | gTACACGGTATTTTTGCCAGCGTACCGTACTGCATTCAGTTGCTGGAAGGGCCATACGTTGAAACGGCACCGGAAGTGGTTGCAGCATTCAGACCGAAGAGTGCAAGACGCGACGTTAGCGAATAAAAAAATCCCCCCGAGCg > 1:621534/1‑143 (MQ=255) acacGGTATTTTTGCCAGCGTACCGTACTGCATTCAGTTGCTGGAAGGGCCATACGTTGAAACGGCACCGGAAGTGGTTGCAGCATTCAGACCGAAGAGTGCAAGACGCGACGTTAGCGAATAAAAAAATCCCCCCGAGCggg > 1:576684/1‑143 (MQ=255) acacGGTATTTTTGCCAGCGTACCGTACTGCATTCAGTTGCTGGAAGGGCCAGACGTTGAAACGGCACCGGAAGTGGTTGCAGCATTCAGACCGAAGAGTGCAAGACGCGACGTTAGCGAATAAGAAAATCCCCCCGAGCggg < 1:499694/143‑1 (MQ=255) tcGGTAGTTTTGCCCGCGTACCGGACTGCATTCAGTTGCGGGAAGGGCCATGCGTTGAAACGGCACCGGAAGTGGTTGCAGCATTCAGACCGAAGAGTGCAAGACGCGACGTTAGCGAATAAAAAAATCCCCCCGAGCggggg < 2:508385/142‑1 (MQ=255) ggTATTTTTGCCAGCGTACCGTACTGCATTCAGGTGCTGGAAGGGCCATACGTTGAAACGGCACCGGAAGTGGTTGCAGCATTCAGACCGAAGAGTGCAAGACGCGACGTTAGCGAATAAAAAAATCCCCCCACTCGGGGGGa < 1:572816/143‑1 (MQ=255) ggaTTTGTGCGAGCGGGGCGTACTGCATTCAGTTGGTGGAAGGGCAAGACGTTGAAACGGCACCGGAAGTGGTTGCAGCATTCAGACCGAAGAGTGCAAGACGCGACGTTAGCGAATAAAAAAATCCCCCCGCTCGGGGGGAt < 2:675941/141‑1 (MQ=255) gTATTTTTGCCAGCGTACCGTACTGCATTCAGTTGCTGGAAGGGCCATACGTCGACACGGCACCGGAAGCGGTTGCAGCATTCAGCCCGAAGAGTGCAAGACGCGACGCTCGCGAATCAAAAAATCCGCCCGAGCGGGGGGac > 2:515907/1‑142 (MQ=255) ttGCCAGAGTACCGTACTGTAGTCGGCTGCTGTAAGGGCCATACGTTGAAACGGCACCGGAAGTGGTTGCAGCATTCAGACCGAAGAGTGCAAGACGCGACGTTAGCGAATAAAAAAATCCCCCCGAGCGGGGGGATCTCaaa < 2:80586/143‑1 (MQ=255) aGCGTACCGTACTGCATTCAGTTGCTGGAAGGGCCATACGTTGAAACGGCACCGGAAGTGGTTGCAGCATTCAGACCGAAGAGTGCAAGACGCGACGTTAGCGAATAAAAAAATCCCCCCGAGCGGGGGGATCTCAAAACAAt > 1:103121/1‑143 (MQ=255) cgtaccgtacTGCATTCAGTTGCTGGAAGGGCCATACGTTGAAACGGCACCGGAAGTGGTTGCAGCATTCAGACCGAAGAGTGCAAGACGCGACGTTAGCGAATAAAAAAATCCCCCCGAGCGGGGGGATCTCAAAACAATTa < 1:355636/143‑1 (MQ=255) taccgtacTGCATTCAGTTGCTGGAAGGGCCATACGTTGAAACGGCACCGGAAGTGGTTGCAGCATTCAGACCGAAGAGTGCAAGACGCGACGTTAGCGAATAAAAAAATCCCCCCGAGCGGGGGGGTCTCAAAACAATTAGt > 1:477495/1‑143 (MQ=255) accgtacTGCATTCAGTTGCTGGAAGGGCCATACGTTGAAACGGCACCGGAAGTGGTTGCAGCATTCAGACCGAAGAGTGCAAGACGCGACGTTAGCGAATAAAAAAATCCCCCCGAGCGGGGGGATCTCAAAACAATTAGTg > 1:18911/1‑143 (MQ=255) cgtacTGCATTCAGTTGCTGGAAGGGCCATACGTTGAAACGGCACCGGAAGTGGTTGCAGCATTCAGACCGAAGAGTGCAAGACGCGACGTTAGCGAATAAAAAAATCCCCCCGAGCGGGGGGATCTCAAAACAATTAGTggg > 1:600183/1‑143 (MQ=255) cgtacTGCATTCAGTTGCTGGAAGGGCCATACGTTGAAACGGCACCGGAAGTGGTTGCAGCATTCAGACCGAAGAGTGCAAGACGCGACGTTAGCGAATAAAAAAATCCCCCCGAGCGGGGGGATCTCAAAACAATTAGTggg < 1:511236/143‑1 (MQ=255) gtagTGCATTCAGGTGCTGGAACGGCCATACGTTGAAACGGCACCGGAAGTGGTTGCAGCATTCAGACCGAAGAGTGCAAGACGCGACGTTAGCGAATAAAAAAATCCCCCCGAGCGGGGGGATCTCAAAACAATTAGTGGGa < 2:633472/143‑1 (MQ=255) tacTGCATTCAGTTGCTGGAAGGGCCATACGTTGAAACGGCACCGGAAGGGGTTGCAGCATTCAGACCGAAGAGTGCAAGACGCGACGTCAGCGAATAAAAAAATCCCCCCGAGCGGGGGGACCTCAAAACAATCAGCgggct > 2:670543/1‑141 (MQ=255) cAGTTGCTGGAAGGGCCATACGTTGAAACGGCACCGGAAGTGGTTGCAGCTTTCAGACCGAAGAGTGCAAGACGCGACGGTAGCGAATAAAAAAATCCCCCCGAGCGGGGGGATCTCAAAACAATTAGTGGGATTCACCAATc < 1:319/143‑1 (MQ=255) aGTTGCTGGAAGGGCCATACGTTGAAACGGCACCGGAAGTGGTTGCAGCATTCAGACCGAAGAGTGCAAGACGCGACGTTAGCGAATAAAAAAATCCCCCCGCTCGGGGGGATCTCACAACAATTAGTGGGATTCACCAATCg > 1:33645/1‑143 (MQ=255) ttGCTGGAAGGGCCATACGTTGAAACGGCACCGGAAGTGGTTGCAGCATTCAGACCGAAGAGTGCAAGACGCGACGTTAGCGAATAAAAAAATCCCCCCGAGCGGGGGGATCTCAAAACAATTAGTGGGATTCACCAATCGGc < 1:33816/143‑1 (MQ=255) tGGAAGGGCCATACGTTGAAACGGCACCGGAAGTGGTTGCAGCATTCAGACCGAAGAGTGCAAGACGCGAAGTTAGCGAATAAAAAAATCCCCCCGAGCGGGGGGAGCTCAAAACAATTAGTGGGATTCACGAATGGGCAGaa > 1:83993/1‑143 (MQ=255) gAAGGGACATGCGGTGAAACGGCACCGGAAGTGGTTGCAGCATTCAGACCGAAGAGTGCAAGACGCGACGTTAGCGAATAAAAAAATCCCCCCGAGCGGGGGGATCTCAAAACAATTAGTGGGATTCACCAATCGGCAGAACg < 1:260784/143‑1 (MQ=255) aGGGCCATACGTTGGAACGGCACCGGAAGTGGTTGCAGCATTCAGACCGAAGAGTGCAAGACGCGACGTTAGCGAATAAAAAAATCCCCCCGAGCGGGGGGATCTCAAAACAATTAGTGGGATTCACCAATCGGCAGAACGGt < 2:110821/143‑1 (MQ=255) gCCATGCGTTGAAACGGCACCGGAAGTGGTTGCAGCATTCAGACCGAAGAGTGCAAGACGCGACGTTAGCGAATAAAAAAATCCCCCCGAGCGGGGGGATCTCACAGAAATTAGTGGGATTCACCAATCGGCAGCACGGTgag > 2:211497/1‑141 (MQ=255) cACCGGAAGCGGTTGCAGCATTCAGACCGAAGAGTGCAAGACGCGACGTTAGCGAATAAAAAAAGCCCCCCGAGCGGGGGGATCTCAAAACAATTAGTGGGATTCACCAATCGGCAGAACGGTGCGACCAAACTGCTCGTTCa < 1:549310/143‑1 (MQ=255) ccGGAGGTGGTTGCAGCATTCAGACCGAAGAGTGCAAGCCGCGACGTTAGCGAATAAAAAAATCCCCCCGAGCGGGGGGATCTCAAAACAATTAGTGGGATTCACCAATCGGCAGAACGGTGCGACCAAACTGCTCGTTCAGt < 2:523404/143‑1 (MQ=255) cGGGAGAGGTTGCAGAATTCAGGCCGAAGAGTGGAAGACGCGACGTTAGCGAATAAAAAAATCCCCCCGAGCGGGGGGATCTCAAAACAATTAGTGGGATTCACCAATCGGCAGAACGGTGCGACCAAACTGCTCGTTCAGTa < 2:294212/143‑1 (MQ=255) ggTTGCAGCATTCAGACCGAAGAGTGCAAGACGCGACGTTAGCGAATAAAAAAATCCCCCCGAGCGGGGGGATCTCAAAACAATTAGTGGGATTCACCAATCGGCAGAACGGTGCGACCAAACTGCTCGTTCAGTACTTCAcc < 1:531147/143‑1 (MQ=255) cagcaTTCAGACCGAAGAGTGCAAGACGCGACGTTAGCGAATAAAAAAATCCCCCCGAGCGGGGGGATCTCAAAACAATTAGTGGGATTCACCATTCGCTAGAACGGTGCGACCAAACTGCTCGTTCAGTACTTCACCCATCg > 1:772795/1‑143 (MQ=255) cagcaTTCAGACCGAAGAGTGCAAGACGCGACGTTAGCGAATAAAAAAATCCCCCCGAGCGGGGGGATCTCAAAACAATTAGTGGGATTCACCAATCGGCAGAACGGTGCGACCCAACTGCTCGTTCAGTACTTCACCCATCg > 2:418980/1‑143 (MQ=255) cagcaTTCAGACCGAAGAGTGCAAGACGCGACGTTAGCGAATAAAAAAATCCCCCCGAGCGGGGGGATCTCAAAACAATTAGTGGGATTCACCAATCGGCAGAACGGTGCGACCAAACTGCTCGTTCAGTACTTCACCCATCg > 1:343228/1‑143 (MQ=255) ttCAGACCGAAGAGTGCAAGACGCGACGTGCGCGAATAAAAAAATCACCCCGAGCGGGGGGATCTCAAAACAAGTAGTGGGACTCACCGATAGGCAGAACGGTCCGACCAAACTGACCGTTCAGAACTTCACCCACCGCCaga > 2:812351/1‑143 (MQ=255) atCAGACCGACGCGTGCAAGCCGAGACGGTAGCGAATAAGAAACTCCCCCCGCGCGGGGGGATCTCAAAACAACTAGTGGGATTCACCAATCGGCAGAACGGTGCGACCAAACTGCTCGTTCAGTACTTCACCCATCGCCaga < 2:373308/142‑1 (MQ=255) tCAGACCGAAGAGTGCAAGACGCGACGTTAGCGAATAAAAAAATCCCCCCGAGCGGGGGGATCTCAAAACAATTAGTGGGATTCACCAATCGGCAGAACGGTGCGACCAAACTGCTCGTTCAGTACTTAACCCATCgaaaaat > 1:641347/1‑137 (MQ=255) gACCGAAGAGTGAAAGACGCGACGTTAGCGAATAAAAAAATCCCCCCGAGCGGGGGGATCTCAAAACAATTAGTGGGATTCACCAATCGGCAGAACGGTGCCACCAAACTGCTCGTTCAGTACATCACACGTCACCagctcca > 2:694510/1‑138 (MQ=255) ccGAAGATTGCAAGACGCGACGTTAGCGAATAAAAAAATCCCCCCGAGCGGGGGGATCTCAAAACAATTAGTGGGATTCACCAATCGGCAGAACGGTGCGACCAAACTGCTCGTTCAGTACTTCACCCATCGCCAGATAGAtt < 1:596108/143‑1 (MQ=255) ccGAAGAGTGCAAGACGCGACGTTAGCGAATAAAAAAATCCCCCCGAGCGGGGGGATCTCAAAACAATTAGTGGGATTCACCAATCGGCAGAACGGTGCGACCAAACTGCTCGTTCAGTACTTCACCCATCGCCAGATAGAtt < 1:431546/143‑1 (MQ=255) ccGAAGAGTGCAAGACGCGACGTTAGCGAATAAAAAAATCCCCCCGAGCGGGGGGATCTCAAAACAATTAGTGGGATTCACCAATCGGCAGAACGGTGCGACCAAACTGCTCGTTCAGTACTTCACCCATCGCCAGATAGAtt > 1:633060/1‑143 (MQ=255) ccGAAGAGTGCAAGACGCGACGTTAGCGAATAAAAAAATCCCACCGAGCGGGGGGATCGCGAAACAATGAGTGGGATTCACCAATCGGCAGAACGGTGCGACCAAACTGCACGTTCAGTACTTCACCCATCGCAagatacgtc > 1:691468/1‑139 (MQ=255) aggagTGCACGTCGGCACGTTCGCGAATAAAAAGATCCCCCCGAGCGGGGGGATCTCAAAACAATTAGTGGGATTCACCAATCGGCAGAACGGTGCGACCAAACTGCTCGTTCAGTACTTCACCCATCGCCAGATAGATTgcg < 2:393395/141‑1 (MQ=255) gagTGCAAGACGCGACGTTAGCGAATAAAAAAATCCCCCCGAGCGGGGGGATCTCAAAACAATTAGTGGGATTCACCAATCGGCAGAACGGTGCGACCAAACTGCTCGTTCAGTACTTCACCCATCGCCAGATAGATTGCGCt > 2:48134/1‑143 (MQ=255) tGCAAGACGCGACGTTAGCGAATAAAAAAATCCCCCCGAGCGGGGGGATCTCAAAACAATTAGTGGGATTCACCAATCGGCAGAACGGTGCGACCAAACTGCTCGTTCAGTACTTCACCCATCGCCAGATAGATTGCGCTGGc > 2:461113/1‑143 (MQ=255) cAAGACGCGACGTTAGCGAATAAAAAAATCCCCCCGAGCGGGGGGATCTCAAAACAATTAGTGGGATTCACCAATCGGCAGAACGGTGCGACCAAACTGCTCGTTCAGTACTTCACCCATCGCCAGATAGATTGCGCTGGCAc < 2:621534/143‑1 (MQ=255) cAAGACGCGACGTTAGCGAATAAAAAAATCCCCCCGAGCGGGGGGATCTCAAAACAATTAGTGGGATTCACCAATCGGCAGAACGGTGCGACCAAACTGCTCGTTCAGTACTTCACCCATCGCCAGATAGATTGCGCTGGCAc > 1:501839/1‑143 (MQ=255) aCGCGCCCTGAGCGAATAAAGAAAGCCCCCCGAGCGGGGGGATCTCACAACAATTAGTGGGATTCACCAATCGGCAGAACGGTGCGACCAACCTGCTCGTCCCGCCCGTCGATCGTGGCCAGATAGATTGCGCTGGCACCGCa < 2:60418/143‑1 (MQ=255) gcgACGTTAGCGAATAAAAAAATCCCCCCGAGCGGGGGGATCTCAAAACAATTAGTGGGATTCACCAATCGGCAGAACGGTGCGACCAAACTGCTCGTTCAGTACTTCACCCATCGCCAGATAGATTGCGCTGGCACCGCAGa > 1:422116/1‑143 (MQ=255) ccGTTAGCGACTACGGAATTCCGCCCGGGCGGGGGGATCTCAGAACAATTAGTGGGATTCACCAATCGGCAGAACGGTGCTACCAAACTGCTCGTTCAGTACTTCACCCAGCGCCAGATAGATTGCGCTGGCACCGCAGATCa < 2:203471/142‑1 (MQ=255) gTTAGCGAATAAAAAAATCCCCCCGAGCGGGGGGATCTCAAAACAATTAGTGGGATTCACCAATCGGCAGAACGGTGCGACCAAACTGCTCGTTCAGTACTTCACCCATCGCCAGATAGATTGCGCTGGCACCGCAGATCAGc < 1:794692/143‑1 (MQ=255) gTTAGCGAACAAGACAATCCCCCCGAGCGGGGGGATCTCAAAACAATTAGTGGGAGTCACCAATCGGCAGACCGGTGCGACCAAACTGCTCGTTCAGTACTTCACCCATCGCCAGATAGATTGCGCTGGCACCGCAGATCAGc < 1:11684/143‑1 (MQ=255) tAAAAAAATCCCCCCTCGCGTGGTGATCTCAAAACAATTCGTGCGATTCACCAATCGGCAGAACGGTGCGACCAAACTGCTCGTTCAGTACTTCACCCATCGCCAGATAGATTGCGCTGGCACCGCAGATCAGCCCAATCCAg < 2:83993/143‑1 (MQ=255) tgagaTCCGCCCGCTCGGGGGGATCTGAAAACAATTAGTGGGATTCACCAATCGGCAGAACGGTGCGACCAAACTGCTCGTTCGGTACTTCCCCCGTAGCCCGATAGATTGCGGTGGGACCGCAGAACAGCCCAATCCAGCCg > 2:235081/5‑143 (MQ=255) agaTCCCCCCGCTCGGGGGGATCTCAAAACAATTAGTGGGATTCACCAATCGGCAGAACGGTGCGACCAAACTGCACGTCCTGGATTTCAAACATCGCCGGATCGATTGCGCTGGCACCGCAGATCAGCCCACACCAGCCGGc > 2:8323/3‑143 (MQ=255) gaTCCCCCCGAGCGGGGGGATCTCAAAACAATTAGTGGGATTCACCAATCGGCAGAACGGTGCGACCAAACTGCTCGTTCAGTACTTCACCCATCGCCAGATAGATTGCGCTGGCACCGCAGATCAGCCCCATCCAGCCGGCa > 1:307407/2‑143 (MQ=255) aTCCCCCCGCTCGGGGGGATCTCAAAACAATTAGTGGGATTCACCAATCGGCAGAACGGTGCGACCAAACTGCTCGTTCAGTACTTCACCCATCGCCAGATAGATTGCGCTGGCACCGCAGATCAGCCCAATCCAGCCGGCaa > 1:601137/1‑143 (MQ=255) ccccGAGCGGGGGGATCTCAACACAATTAGTGGGATTCACCACTCGGCAGAACGGTGCGACCAAACTGCTCGTCCAGTACTTCACCCATCGCCAGATAGATCGCGCGGGCACCGCAGAGCAGCCCAATCCACCCCGCCACGTg > 2:482103/1‑143 (MQ=255) ccacgtgCGGTGTGATCTCAAAACAATTGGTTGTATTCACCAATCGGCAGAACGGTGCGACCAGACTGCTCGTTCAGTGCTTCACCCATCGCCAGATAGATTGCGCTGGCACCGCAGATCAGCCCACTCCAGCCGGCAAAGTg < 2:341850/137‑1 (MQ=255) gcGAGCGGGGGGACCTCCACACAGTTAGTGGGAGGCACCAAGCGGCAGAGCGGGTCGACCAAACTGCGCGTTCAGTACTTCACCCATCGCCAGATAGATTGCGCTGGCACCGCAGATCAGCCCAATCCAGCCGGCAAAGTGga < 1:335348/142‑1 (MQ=255) ccGAGCGGGGGGATCTCAAAAAAATTAGTGGGATTCACCAATCGGCAGAACGGTGCGACCAAACTGCTCGTAGAGTACTTCAACCATCGCCAGATAGATTGCGCTGGCAGCGCGGATCCGCGCAAGCCAGCCGGAAAAGCGga > 2:673415/1‑143 (MQ=255) | GTACACGGTATTTTTGCCAGCGTACCGTACTGCATTCAGTTGCTGGAAGGGCCATACGTTGAAACGGCACCGGAAGTGGTTGCAGCATTCAGACCGAAGAGTGCAAGACGCGACGTTAGCGAATAAAAAAATCCCCCCGAGCGGGGGGATCTCAAAACAATTAGTGGGATTCACCAATCGGCAGAACGGTGCGACCAAACTGCTCGTTCAGTACTTCACCCATCGCCAGATAGATTGCGCTGGCACCGCAGATCAGCCCAATCCAGCCGGCAAAGTGGA > NC_000913/9768‑10046 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |