Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,351,798	C→T	A410T (GCC→ACC)	arcB ←	sensory histidine kinase ArcB

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,351,798	0	C	T	100.0%	66.0 / NA	26	A410T (GCC→ACC)	arcB	sensory histidine kinase ArcB
Reads supporting (aligned to +/- strand):  ref base C (0/0);  new base T (16/10);  total (16/10)

TGGTAATACATGGCGAAAATTTTATCCAGCTCATCCTGCGGAATGCCGATACCAGAGTCTTCCACTTCAAAATGCAGCATATCGCCTTCATCGTAGCGCACGCGCACGGTAACCTGGCCTTGCTGGGTGAATTTGACGGCGTTACTGATGAGGTTCCACAGGATCTGCCGTAAACGCGTCCCGTCGGTAATGACCTGATGCGGTAATGGCAGCGTCGGCTCCAGGTTAAAGCGCAATCCTTTTTGTTGCGCCTGCAATGCGGAGAGATTTTCCA  >  NC_000913/3351659‑3351932                                                                                                                                            |                                                                                                                                       tGGTAATACATGGCGAAAATTTTATCCAGCTCATCCTGCGGAATGCCGATACCAGAGTCTTCCACTTCAAAATGCAGCATCTCGCCTTCATCGTAGCGCGCGCGCACGGTAACATGGCCTTGCCGGGTGAATTTGACGGTGtt                                                                                                                                     >  2:46125/1‑143 (MQ=255)   gTAATACATGGCGAAAATTTTATCCAGCTCATCCTGCGGAATGCCGATACCAGAGTCTTCCACTTCAAAATGCAGCATATCGCCTTCATCGTAGCGCACGCGCACGGTAACCTGGCCTTGCTGGGTGAATTTGACGGTGTTAc                                                                                                                                   >  1:488030/1‑143 (MQ=255)     aaTACATGGCGAAAATTTTATCCAGCTCATCCTGCGGAATGCCGATACCAGAGTCTTCCACTTCAAAATGCAGCATATCGCCTTCATCGTAGCGCACGCGCACGGTAACCTGGCCTTGCTGGGTGAATTTGACGGTGTTACtg                                                                                                                                 >  1:390697/1‑143 (MQ=255)               gAAAATTTTATCCAGCTCATCCTGCGGAATGCCGATACCAGAGTCTTCCACTTCAAAATGCAGCATATCGCCTTCATCGTAGCGCACGCGCACGGTCACCTGGCCTTGCTGGGTGAATTTGCCGGTGTTACTGCTGAGGTTcc                                                                                                                       >  1:265063/1‑143 (MQ=255)                            aGCTCATCCTGCGGAATGCCGATACCAGAGTCTTCCACTTCAACATGCAGCATATCGCCTTCATCGTAGCGCACGCGCACGGTAACCTGGCCTTGCTGGGTGAATTTGACGGTGTTACTGATGCGGTTCCACAGGATCTGCCg                                                                                                          >  2:522242/1‑143 (MQ=255)                                 aTCCTGCGGAATGCCGATACCAGAGTCTTCCACTTCAAAATGCAGCATATCGCCTTCATCGTAGCGCACGCGCACGGTAACCTGGCCTTGCTGGGTGAATTCGACGGTGTTACTGATGAGGTTCCCCAGCACCGGCCGTagag                                                                                                     >  2:225002/1‑140 (MQ=255)                                        ggAATGCCGATACCAGGGTCTGCCACTGCAACATGCAGCATATCGCCTGCATCGTAGCGCACGCGCACGGTAACCTGGCCTTGCTGGGTGAATTTGACGGTGTTACTGATGAGGTTCCACAGGATCTGCCGTAAACGCGTccc                                                                                              <  2:351747/143‑1 (MQ=255)                                            tGCCGATACCAGAGTCTTCCACTTCAAAATGCAGCATATCGCCTTCAACGTAGCGCACGCGCACGGTAACCTGGCCTTGCTGGGTGAATTTGACGGTGTTACTGATGAGGTTCCACAGGATCTGCCGTAAACGCGTCCCGTCg                                                                                          >  1:731483/1‑143 (MQ=255)                                              ccGATACCAGAGTCTTCCACTTCAAAATGCGGCAGATCTCCGTCATCGTAGCGCACGCGCACGGTAACCTGGCCTTGCTGGGTGAATTTGACGGTGTTACTGATGAGGTTCCACAGGATCTGCCGTAAACGCGTCCCGTCGGt                                                                                        <  1:386780/143‑1 (MQ=255)                                                  tACCAGAGTCTCCCACTTCAAAATGCAGCATATCGCCTTCATCGTAGCGCACGCGCACGGTAACCTGGCCTTGCTGGGTGAATTTGACGGTGTTACTGATGAGGTTCCACAGGATCTGCCGTAAACGCGTCCCGTCGGTAATg                                                                                    <  1:414335/143‑1 (MQ=255)                                                            ttCCACTTCAAAATGCAGCATATCGCCTGCATCGTAGCGCACGCGCACGGTAACCTGGCCTTGCTGGGTGAATTTGACGGTGTTACTGGTGAGGTTCCCCACGATCTGCCGTAAACGCGTCCCGTCGGTAATGACCTGATGCg                                                                          <  1:212343/143‑1 (MQ=255)                                                                ccctCAAAATGCCGCATCTCGCCTTCATCGTAGCGCACGCGCACGGTAACCTGGCCTTGCTGGGTGAATTTGACGGTGTTACTGATGAGGTTCCACAGGATCTGCCGTAAACGCGTCCCGTCGGTAATGACCTGATGCGGTaa                                                                      <  1:120485/140‑1 (MQ=255)                                                                  ttCAAAATGCAGCATATCGCCTTCATCGTAGCGCACGCGCACGGTAACCTGGCCTTGCTGGGTGAATTTGACGGTGTTACTGATGAGGTTCCACAGGATCTGCCGTAAACGCGTCCCGTCGGTAATGACCTGATGCAGTAATg                                                                    >  1:415889/1‑143 (MQ=255)                                                                  ttCAAAAGGCAGCATATCGCCTTCATCGTAGCGCACGCGCACGGTAACCTGGCCTTGCTGGGTGAATTTGACGGTGTTACTGATGAGGTTCCACAGGATCTGCCGTAAACGCGTCCCGTCGGTAATGACCTGATGCGGTAATg                                                                    <  1:41972/143‑1 (MQ=255)                                                                     aaaaTGCAGCATATCGCCTTCATCGTAGCGCACGCGCACGGTAACCTGGCCTTGCTGGGTGAATTTGACGGTGTTACTGATGAGGTTCCACCGGATCTGCCGTAAACGCGTCCCGTCGGTCATGACCTGATGCGGGAATGGCa                                                                 >  1:435411/1‑143 (MQ=255)                                                                                 atCGCCTTCATCGTAGCGCACGCGCACGGTAACCTGGCCTTGCTGGGTGAATTTGACGGTGTTACTGATGAGGTTCCGAAGGATCTGCCGTAAACGCGTCACGTCGGTACTGACGTGATGCGGTAGTGGCAGCGTCggggcca                                                     >  1:303191/1‑138 (MQ=255)                                                                                                   cacgcgcacgGTAACCTGGCCTTGCTGGGTGAATTTGACGGTGTTACTGATGAGGTTCCACAGGATCTGCCGTAAACGCGTCCCGTCGGTAATGACCTGATGCGGTAATGGCAGCGTCGGCTCCAGGTTAAAGCGCAATCCtt                                   >  1:667227/1‑143 (MQ=255)                                                                                                      gcgcacgGTAACCTGGACTTGATGGTTGATTTTGACGGTGTTACTGATGAGGTTCCACAGGATCTGCCGTAAACGCGTCCCGTCGGTAATGACCTGATGCGGTAAGGGCAGCGTCGGCCCCAGGTTAAAGCGCACTCCtctat                                >  2:273474/1‑139 (MQ=255)                                                                                                           cgGTAACCTGGCCTTGCTGGGTGAATTTGACGGTGTTACTGATGAGGTTCCACAGGATCTGCCGTAAACGCGTCCCGTCGGTAATGACCTGATGCGGTAATGGCAGCGTCGGCTCCAGGTTAAAGCGCAATCCTTTTTGTTgc                           <  1:579468/143‑1 (MQ=255)                                                                                                                  cTGGCCTTGCTGGGTGAATTTGACGGTGTTACTGATGAGGTTCCACAGGATCTGCCGTAAACGCGTCCCGTCGGTAATGACCTGATGCGGTAATGGCAGCGTCGGCTCCAGGTTAAAGCGCAATCCTTTTTGTTGCGCCCGCa                    >  2:375664/1‑143 (MQ=255)                                                                                                                  cTGGCCTTGCTGGGTGAATTTGACGGTGTTACTGATGAGGTTCCACAGGATCTGCCGTAAACGCGTCCCGTCGGTAATGACCTGATGCGGTAATGGCAGCGTCGGCTCCAGGTTAAAGCGCAATCCTTTGTGTTGCGCCTGCa                    >  1:538573/1‑143 (MQ=255)                                                                                                                      ccTTGCTGGGTGAATTTGACGGTGTTACTGATGAGGTTCCACAGGATCTGCCGTAAACGCGTCCCGTCGGTAATGACCTGATGCGGTAATGGCAGCGTCGGCTCCAGGTTAAAGCGCAACCCTTTTTGCTGCGCCTGCAATGc                >  1:106783/1‑143 (MQ=255)                                                                                                                         tGCTGGGTGAAGTTGACGGTGTTACTGATGAGGTTCCACAGGATCTGCCGTAAACGCGTCCCGTCGGTAATGACCTGATGCGGTAATGGCAGCGTCGGCTCCAGGTTAAAGCGCAATCCTTTTTGTTGCGCCTGCAATGCGga             <  2:390697/143‑1 (MQ=255)                                                                                                                                  aaTTTGCCGGTGTTACTGATGAGGTTCCACAGGATCTGCCGTAAACGCGTCCCGTCGGTAATGACCTGATGCGGTAATGGCAGCGTCGGCTCCAGGTTAAAGCGCAATCCTTTTTGTTGCGCCTGCAATGCGGAGAGATTTTc    <  1:215863/143‑1 (MQ=255)                                                                                                                                  aaTTTGACGGTGTTACTGATGAGGTTCCACAGGATCTGCCGTAAACGCGTCCCGTCGGTAATGACCTGATGCGGTAATGGCAGCGTCGGCTCCAGGTTAAAGCGCAATCCTTTTTGTTGCGCCTGCAATGCGGAGAGATTTTc    <  1:522242/143‑1 (MQ=255)                                                                                                                                    tttGACGGTGTTACTGATGAGGTTCCACAGGATCTGCCGTAAACGCGTCCCGTCGGTAATGACCTGATGCGGTACTGGCAGCGTCGGCTCCAGGTTAAAGCGCCAGCATTTTTGTTGCGCCTACACTGCTGAGCGATCTTCCa  >  2:609396/1‑143 (MQ=255)                                                                                                                                            |                                                                                                                                       TGGTAATACATGGCGAAAATTTTATCCAGCTCATCCTGCGGAATGCCGATACCAGAGTCTTCCACTTCAAAATGCAGCATATCGCCTTCATCGTAGCGCACGCGCACGGTAACCTGGCCTTGCTGGGTGAATTTGACGGCGTTACTGATGAGGTTCCACAGGATCTGCCGTAAACGCGTCCCGTCGGTAATGACCTGATGCGGTAATGGCAGCGTCGGCTCCAGGTTAAAGCGCAATCCTTTTTGTTGCGCCTGCAATGCGGAGAGATTTTCCA  >  NC_000913/3351659‑3351932

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑