| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 1999548 | 18 (0.540) | 4 (0.130) | 4/248 | NT | 18.2% | intergenic (‑68/+37) | dcyD/tcyJ | D‑cysteine desulfhydrase/cystine ABC transporter periplasmic binding protein |
| ? | NC_000913 | = 1999563 | 19 (0.610) | intergenic (‑83/+22) | dcyD/tcyJ | D‑cysteine desulfhydrase/cystine ABC transporter periplasmic binding protein | |||||
GCGCGCCGATAAACTCCAGCCGTGGAAAACGGGTTAAATTATGCAGTGGCATAACAGCCTCCGATGTGTGTTGTTGTGA‑TTTTCTTATTATGCACGCTGAAAACGCGTAAATAAAAAAGGCGCTAGTGAAAGCGCCCTTTTTTGTCATTATGCTGATTATTTGGTCACATCAGCACCAAACCATTTTTCGGAAAGGGCTTGCAGAGTGCCATCTTTTTGCATTTCCGCAATTGCATCATTCACTGCTTTCAGCAGGTCCTCATTTCCTTTACGCAG > NC_000913/1999429‑1999704 | gcgcgcCGATAAACTCCAGCCGTGGAAAACGGGTTAAATTATGCAGTGGCATAACAGCCTCCGATGTGTGTTGTTGTGA‑TTTTCTTATTATGCACGCTGAAAACGCGTAAATAAAAAAGGCGCTAGTGAAAGCGCcctttttt > 2:406961‑M2/1‑135 (MQ=255) gcgcCGATAAACTCCAGACGTGGAAAACGGGTTAAATTATGCAGTGGCATAACAGCCTCCGAGGTGTGTTGTTGTGA‑TTTTCTTATTATGCACGCTGAAAACGGATAAATAAAAAAGACGCTAGTGAAGGCGGCCATGTTTGt > 2:566865/1‑143 (MQ=255) gATAAACTCCAGCCGTGGAAAACGGATTAAATTATGCAGTGGCATAACAGCCTCCGATGTGTGTTGTTGTGAATTTTCTTATTATGCACGCTGAAAACGCGTAAATCAACAAGGCGCTACTGAAAACGCcctcttttatcatt < 2:134752‑M2/143‑15 (MQ=255) tCCAGCCGTGGAAAACGGGTTAAATTATGCAGTGGCATAACAGCCTCCGATGTGTGTTGTTGTGA‑TATTCTTATTATGCACGCTGAAAACGCGTAAATAAAAAAGGCGCTAGTGAAAGCGCCCTTTTTTGTCATTATGCTgct > 2:19869/1‑141 (MQ=255) gCCGTGGACGACGTGTTAAATTATGCAGTGGCATAGCAGCCTCCGATGTGTGTTGTTGTGA‑TTTTCTTATTATGCACGCTGAAATCGCGTAAATAAAAAAGGCGCTAGTGAAAGCGCCCTTTTTTGTCATTATGCTGattatt < 2:638551/143‑1 (MQ=255) cGTGGAAAACGGGTTAAATTATGCAGTGGCATAACAGCCTCCGATGTGTGTTGTTGTGA‑TTTTCTTATTATGCACGCTGAAAACGCGTAAATAAAAAAGGCGCTAGTGAAAGCGCCCTTTTTTGTCATTATGCTGATTATTTg < 1:488793/143‑1 (MQ=255) aaCGGGTTAAATTATGCAGTGGCATAACAGCCTCCGATGTGTGTTGTTGTGA‑TTTTCTTATTATGCACGCTGAAAACGCGTAAATAAAAAAGGCGCTAGTGAAAGCGCCCTTTTTTGTCATTATGCTGATTATTTGGTCACAt > 1:562463/1‑143 (MQ=255) gTTAAATTATGCAGTGGCATAACAGCCTCCGATGTGTGTTGTTGTGA‑TTTTCTTATTATGCACGCTGAAAACGCGTAAATAAAAAAGGCGCTAGTGAAAGCGCccttttttatttacgcgttttcagcgtgcataataa < 1:490178‑M2/139‑37 (MQ=255) gTTAAATTATGCAGTGGCATAACAGCCTCCGATGTGTGTTGTTGTGA‑TTTTCTTATTATGCACGCTGAAAACGCGTAAATAAAAAAGGCGCTAGTGAAAGCGCccttttttatttacgcgttttcagcgtgcataataa > 2:490178‑M2/1‑103 (MQ=255) gTTAAATTATGCAGTGGCATAACAGCCTCCGATGTGTGTTGTTGTGA‑TTTTCTTATTATGCACGCTGAAAACGCGTAAATAAAAAAGGCGCTAGTGAAAGCGCCCTTTTTTGTCATTATGCTGATTATTTGGTCACATCAGCa > 1:197473/1‑143 (MQ=255) gTTAAATTATGCAGTGGCATAACAGCCTCCGATGTGTGTTGTTGTGA‑TTTTCTTATTATGCACGCTGAAAACGCGTAAATAAAAAAGGCGCTAGTGAAAGCGCCCTTTTTTGTCATTATGCTGATTATTTGGTCACATCAGCa < 2:420777/143‑1 (MQ=255) aTTATGCAGTGGCATAACAGCCTCCGATGTGTGTTGTTGTGA‑TTTTCTTATTATGCACGCTGAAAACGCGTAAATAAAAAAGGCGCTAGTGAAAGCGCCCTTTTTTGTCATTATGCTGATTATTTGGTCACATCAGCACCaaa < 1:638583/143‑1 (MQ=255) tGCAGTGGCATAACAGCCTCCGATGTGTGTTGTTGTGA‑TTTTCTTATTATGCACGCTGAAAACGCGTAAATAAAAAAGGCGCGAGTGAAAGCGCCCTTTTTTGTCATTATGCTGATTATTTGGTCACATCAGCACCAAACCAt > 1:597931/1‑143 (MQ=255) ggCATAACAGCCTCCGATGTGTGTTGTTGTGA‑TTTTCTTATTATGCACGCTGAAAACGCGTAAATAAAAAAGGCGCTAGTGAAAGCGCCCTTTTTTGTCATTATGCTGATTATTTGGTCACATCAGCACCAAACCATTTTTCg < 2:113924/143‑1 (MQ=255) gCATAACAGCCTCCGATGTGTGTTGTTGACA‑ATTTCTTGTTGTGCACGCTGAAAACGCGTAAATAAAAAAGGCGCTAGTGAAAGCGCCCTTTTTTGTCATTATGCTGATTATTTGGTCACATCAGCACCAAACCATTTTTCgg < 1:177400/143‑1 (MQ=255) aTAACAGCCTCCGATGTGTGTTGTTGTGA‑TTTTCTTATTATGCACGCTGAAAACGCGTAAATAAAAAAGGCGCTAGTGAAAGCGCCCTTTTTTGTCATTATGCTGATTATTTGGTCACATCAGCACCAAACCATTTTTCGGaa < 1:100603/143‑1 (MQ=255) cTCCGATGTGTGTTGTTGTGA‑TTTTCTTATTATGCACGCTGAAAACGCGTAAATAAAAAAGGCGCTAGTGAACGCGCCCTTTTTTGTCATTATGCTGATTATTTGGTCACATCAGCACCAAACCATTTTTCGCAAAGGGCTTg > 1:36088/1‑143 (MQ=255) gttgttgtGA‑TTTTCTTATTATGCACGCTGAAAACGCGTAAATAAAAAAGGCGCTAGTGAAAGCGCCCTTTTTTGTAATTATGCTGATTATTTGGTCACATCAGACCCAAACAATTTTTTGGAAAGGGGTTGGAGAGTGCAAt > 1:544917/1‑143 (MQ=255) ttttCTTATTATGCACGCTGAAAACGCGTAAATAAAAAAGGCGCTAGTGAAAGCCCCCTTTTTTGTCCTTATGCTGATTATTTGGTCACCTCACCACCAACCCATTCCTCGGACGGGGCTTGCCGCGTGCCCTCtctttcctt > 1:602855/1‑139 (MQ=255) tGCACGCTTAAATAGTGTAAATAAAAAAGGCGCTAGTGAAAGCGCCCTTTTTTGTCATTATGCTGATTATTTGGTCACATCAGCACCAAACCATTTTTCGTAAAGGGCTTGCAGAGTGCCATCTTTTTGCATTTCCGCAATTg < 1:453082/143‑1 (MQ=255) aataaaAAAGGCGCTAGTGAAAGCGCCCTTTTTTGTCATTATGCTGATTATTTGGTCACATCAGCACCAACCCATTTTTCGGAAAGGGCTTGCAGAGTGCCATCTTTTTGCATTTCCGCAATTGCATCATTCACTGCTTTcag < 1:214772/143‑1 (MQ=255) aataaaAAAGGCGCTAGTGAAAGCGCCCTTTTTTGTCATTATGCTGATTATTTGGTCACATCAGCACCAAACCATTTTTCGGAAAGGGCTTGCAGAGTGCCATCTTTTTGCATTTCCGCAATTGCATCATTCACTGCTTTcag < 1:492352/143‑1 (MQ=255) aaaaaGGCGCTAGTGAAAGCGCccttttttatttacgcgttttcagcgtgcataataagaaaatcacaacaacacacatcggaggctgttatgccactgcataatttaacccgttttccacggctggagtttatcggcgcgcc < 1:542988‑M2/143‑122 (MQ=255) aaaGGCGCTAGTGAAAGCGCCCTTTTTTGTCATTATGCTGATTATTTGGTCACATCAGCACCAAACCATTTTTCGGAAAGGGCTTGCAGAGGGCCATCTTTTTGCATTTCCGCAATTGCATCATTCACTGCTTTCAGCAGGtg > 2:482164/1‑142 (MQ=255) gcTAGTGAAAGCGCccttttttatttacgcgttttcagcgtgcataataagaaaatcacaacaacacacatcggaggctgttatgccactgcatactttaacccgttttccacggctggagtttatcggcgcgccaacgccgc < 1:261040‑M2/143‑130 (MQ=255) tAGTGAAGGCGCCCTTTTTTGTCATTATGCTGATTATTTGGTCACATCAGCACCAAACCATTTTTCGGAAAGGGCTTGCAGAGTGCCATCTTTTTGCATTTCCGCAATTGCATCATTCACTGCTTTCAGCAGGTCCTCATTTc < 2:367390/143‑1 (MQ=255) gcCCTTTTTTGTCATTATGCTGATTATCTGGTCACATCAGCACCAAACCATTTTTCGGAAAGGGCTTGCAGAGTGCCATCTTTTTGCATTTCCGCAATTGCATCATTCACTGCTTTCAGCAGGTCCTCATTTCCTTTACGCAg < 1:312525/143‑1 (MQ=255) | GCGCGCCGATAAACTCCAGCCGTGGAAAACGGGTTAAATTATGCAGTGGCATAACAGCCTCCGATGTGTGTTGTTGTGA‑TTTTCTTATTATGCACGCTGAAAACGCGTAAATAAAAAAGGCGCTAGTGAAAGCGCCCTTTTTTGTCATTATGCTGATTATTTGGTCACATCAGCACCAAACCATTTTTCGGAAAGGGCTTGCAGAGTGCCATCTTTTTGCATTTCCGCAATTGCATCATTCACTGCTTTCAGCAGGTCCTCATTTCCTTTACGCAG > NC_000913/1999429‑1999704 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |