| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 3,637,646 | +T | coding (5/1500 nt) | pitA → | metal phosphate:H(+) symporter PitA |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 3,637,645 | 1 | . | T | 98.0% | 150.4 / NA | 49 | L2L (CTA→TTA) | pitA | metal phosphate:H(+) symporter PitA |
| Reads supporting (aligned to +/- strand): ref base . (0/0); major base T (22/26); minor base G (0/1); total (22/27) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.92e-01 | |||||||||||
AATTATATAAGATAATTATTTTTTGAGTGAAATCCATACAGGGGGCAAATCAAAAAAAGTCTATATTTCACTTTGCCCGCGCCGCGAAAGTCACTGATAATGCGCCGCGTTCATGTCCTCAAAATGGCGTAACGTCCTATGC‑TACATTTGTTTGCTGGCCTGGATTTGCATACCGGGCTGTTATTATTGCTTGCACTGGCTTTTGTGCTGTTCTACGAAGCCATCAATGGTTTCCATGACACAGCCAACGCCGTGGCAACCGTTATCTATACCCGCGC > NC_000913/3637504‑3637781 | aaTTATATAAGATAATTATTTTTTGAGTGAAATCCATACAGGGGGCAAATCAAAAAAAGTCTATATTTCACTTTGCCCGCGCCGCGAAAGTCACTGATAATGCGCCGCGTTCATGTCCTCAAAATGGCGTAACGTCCTATGC‑t > 2:525236/1‑143 (MQ=255) tatataAGATAATTATTTTTTGAGTGAAATCCATACAGGGGGCAAATCAAAAAAAGTCTATATTTCACTTTGCCCGCGCCGCGAAAGTCACTGATAATGCGCCGCGTTCATGTCCTCAAAATGGCGTAACGTCCTATGC‑ttac < 1:387997/143‑4 (MQ=255) aaGATAATTATTTTTTGAGTGAAATCCATACAGGGGGCAAATCAAAAAAAGTCTATATTTCACTTTGCACGCGCCGCGAAAGTCACTGATAATGCGCAGCGTTCATGTCCTCAAAATGGAGTAACGTCGTATGCTTACAtttg > 1:719899/1‑143 (MQ=255) atgattattGGTTGAGTGAAATGCAGACAGGGGGGAAATCAAAAAAAGTCTATATTTCACTTTGCCCGCGCCGCGAAAGTCACTGATAATGCGCCGCGTTCATGTCCTCAAAATGGCGTAACGTCCTATGCTTACAtttgttt < 2:154859/140‑1 (MQ=255) aTAATTATTTTTTGAGTGAAATCCATACAGGGGGCAAATCAAAAAAAGTCTATATTTCACTTTGCCCGCGCCGCGAAAGTCACTGATAGTGCGCAGCGTTTAGGGCTTTTTTATGGCGTAACGTCCTATGCTTACAtttgttt < 1:620096/143‑1 (MQ=255) attattTTTTGAGTGAAATCCATACAGGGGGCAAATCAAAAAAAGTCTATATTTCACTTTGCCCGCGCCGCTAAATTCACTGATAATGGGCCGCGTTCAGGGCCTCAAAATGGCGTAACGTCCTATGCTTACATTTGTTTGCt < 1:811687/143‑1 (MQ=255) ttattTTTGGAGGGAAATCCAGACAGGGGGCAAATCAAAAAAAGTCTATATTTCACTTTGCCCGCGCCGCGAAAGTCACTGATAATGCGCCGCGTTCATGTCCTCAAAATGGCGTAACGTCCTATGCTTACATTTGTTTGCTg < 2:810924/143‑1 (MQ=255) attTTTTGAGTGAAATCCATACAGGGGGCAAATCAAAAAAAGTCTATATTTCACTTTGCCCGCGCCGCGAAAGTCACTGATAATGCGCCGCGTTCATGTCCTCAAAATGGCGTAACGTCCTATGCTTACATTTGTTTGCTGGc > 1:536640/1‑143 (MQ=255) tttGAGTGAAATCCATACAGGCGGCAAATCAAACAAAGTCTATATTTCACTTTGCACGCGCCGCGAAAGTCACTGCTAATGCGCCGCGTCTCTGTGCTCAAGATGACGCAACATCCTATGCTTCCATTTGCTTGCTGAccgca > 2:267655/1‑140 (MQ=255) gAGCGACATCTATACAGGGGGCAAATCAAACCAAGTCTATATTTCACTTCGCCCGCGCCGCGAAAGTCACTGATAATGCGCCGCGTTCATGTCCTCAAAATGGCGTAACGTCCTATGCTTACATTTGTTTGCTGGCCTGGAtt < 1:102726/143‑1 (MQ=255) aGTGAAATCCATACAGGGGGCAAATCAAAAAAAGTCTATATTTCACTTTGCCCGCGCCGCGAAAGTCACTGATAATGCGCCGCGTTCATGTCCTCAAAATGGCGTAACGTCCTATGCTTACATTTGTTTGCTGGCCTGGAttt < 2:327926/143‑1 (MQ=255) aGTGAAATCCAGACCGGGGGCACATCAAAAACAGTCTCTATTTCACTTTGCCCGCGCCGCGAAAGTCACTGATAATGCGCCGCGTTCATGTCCTCAAAATGGCGTAACGTCCTATGCTTACATTTGTTTGCTGGCCTGGAttt < 2:198234/143‑1 (MQ=255) tGAAATCCATACAGGGGGCAAATCAAAAAAAGTCTATATTTCACTTTGCCCGCGCCGCGAAAGTCACTGATAATGCGCCGCGTTCATGTCCTCAAAATGGCGTAACGTCCTATGCTTACATTTGTTTGCTGGCCTGACTTTGc > 1:557243/1‑143 (MQ=255) tGAAATCCATACAGGGGGCAAATCAAAAAAAGTCTATATTTACCCTCCAACGCCCTTCGAAAGCCAGTGGTTGACCACCACAGCCATGTCCTCAAAATGGCGTAACGTCCTATGCTTACATTTGTTTGCTGGCCTGGATTTGc > 1:209568/1‑143 (MQ=255) tGAAATCCATACAGGGGGCAAACCAAAAAAAGTCTATATTTCACGTTGCCCGCGCCGCGAAAGTCACTGATAATCCTGCGCGTTAATGTCCTCAAAATGGCGTAACGTCCTATGCTTACATTTGTTTGCTGGCCTGGATTTGc < 2:108214/143‑1 (MQ=255) aTACAGGGGGCAAATCAAAAAAAGTCTATATTTCACTTTGCCCGCGCCGCGAAAGTAACTGATAATGCGCCGCGTTCATGTCCTCAAAATGGCGTAACGTCCTATGCTTACATTTGTTTTGTGGATTGGATTTGAATACTggg > 2:724336/1‑143 (MQ=255) cAGGGGGCAAATCAAAAAAAGTCTATGTTGCACTTTGCCCGCGCCGCGAAAGTCACTGATAATGCGCCGCGTTCATGTCCTCAAAATGGCGTAACGTCCTATGCTTACATTTGTTTGCTGGCCTGGATTTGCATACCGGGCTg < 2:645017/143‑1 (MQ=255) ggggCAAATCAAAAAAAGTCTATATTTCACTTTGCGCGCGCCGCGAAAGTCACTGATAATGCGCCGCGTTCATGTCCTTAACATGGCGTAACGTCCTATGCTTACATTTGTTTGCTGGCCTGGATTTGCATACCGGGCTGtta > 2:730476/1‑143 (MQ=255) ggCAAATCAAAAAAAGTCTATATTTCACTTTGCCCGCGCCGCGAAAGTCACTGATAATGCGCCGCGTTCATGTCCTCAAAATGGCGTAACGTCCTATGCTTACATTTGTTTGCTGGCCTGGATTTGCATACCGGGCTGttatt > 1:102925/1‑143 (MQ=255) cAAATCAAAAAAAGTCTATATTTCACTTTGCCCGCGCCGCGAAAGTCACTGATAATGCGCCGCGTTCATGTCCTCAAAATGGCGTAACGTCCTATGCTTACAtttgt < 2:296004/107‑1 (MQ=255) cAAATCAAAAAAAGTCTATATTTCACTTTGCCCGCGCCGCGAAAGTCACTGATAATGCGCCGCGTTCATGTCCTCAAAATGGCGTAACGTCCTATGCTTACAtttgt > 1:296004/1‑107 (MQ=255) aTCAAAAAAAGTCTATATTTCACTTTGCCCGCGCCGCGAAAGTCACTGATAATGCGCCGCGTTCATGTCCTCAAAATGGCGTAACGTCCTATGCTTACATTTGTTTGCTGGCCTGGATTTGCATACCGGGCTGTTATTAttgc < 2:347760/143‑1 (MQ=255) tCAAAAAAAGTCTATATTTCACTTTGCCCGCGCCGCGAAAGTCACTGATAATGCGCCGCGTTCATGTCCTCCAAATAGCGTAACGACCTATGCTTTCATTTGCTTCCTGTCCTGGACTTGCATCCCGGCCTGTTATTAttgct > 1:242785/1‑143 (MQ=255) tCAAAAAAAGTCTATATTTCACTTTGCCCGCGCCGCGAAAGTCACTGATAATGCGCCGCGTTCATGTCCTCAAAATGGCGTAACGTCCTATGCTTACATTTGTTTGCTGGCCTGGATTTGCATACCGGGCTGTTATTAttgct < 2:538954/143‑1 (MQ=255) cAAAACAAGTCTTTATTTCATTTTGCCCGCGCCGCGACAGGCACTGATAATGCGCCGCGTTCATGTCCTCAAAATGGCGTAACGTCCTATGCTTACATTTGTTTTCTGGCTTGGATTTGCATACCGGGCTGTTATTAttgctc < 2:91298/143‑2 (MQ=255) cAAAAAAAGTCTATATTTCACTTTGCCCGCGCCGCGAAAGTCACTGATAATGCGCCGCGTTCATGTCCTCAAAATGGCGTAACGTCCTATGCTTACATTTGTTTGCTGGCCTGGATTTGCATACCGGGCTGTTATTAttgctt < 1:693318/143‑1 (MQ=255) acgTCTATATTTCCCTTTGCCCGCGCCGCGAAAGTCACTTACACTGCGCCGCGTTCATGTCCTCAACATGCCGTAACGTCCTATGCTTACATTTGTTTGCTGGCCTGGATTTGCATACCGGGCTGTTATTATTGCTTGCACTg < 2:544915/141‑1 (MQ=255) tCTATATTTCACTTTGCCCGCGCCGCGAAAGTCACTGATAATGCGCCGCGTTCATGTCCTCAAAATGGCGTAACGTCCTATGCTTACATTTGTTTGCTGGCCTGGATTTGCATACCGGGCTGTTATTATTGCTTGCACTGGCt > 1:66992/1‑143 (MQ=255) tataTTTCACTTTGCCCGCGCCGCGAAAGTCACTGATAATGCGCCGCGTGCATGTCCTCAAAGTGGCGTACCGTCCTATGCTTACTTGTGTTTGCTGGCCTGGATTTGCAGACTCGGCTGTCTTGTTTGTTTGGCCTGGCttc > 2:570068/1‑142 (MQ=255) catatGTCACGTTGCCCGCGCCGCGAGAGTCACTGATAATGCGCCGCGTGCATGTCCTCAAAATGGCGTAACGTCCTATGCTTACATTTGTTTGCTGGCCTGGATTTGCATACNGGGCTGTTATTATTGCTTGCACTGGCttt < 1:667769/142‑1 (MQ=255) tatTTCACTTTGCCCGCGCCGCGAAAGTCACTGATAATGCGCCGCGTTCATGTCCTCAAAATGGCGTAACGTCCTATGCTTACATTTGTTTGCTGGCCTGGATTTGCATACCGGGCTGTTCTTATTGCTGGCACTGGCTTTtg > 1:527950/1‑143 (MQ=255) tttCACTTTGCCCGCGCCGCGAAAGTCACTGATAATGCGCCGCGTTCATGTCCTCAAAATGGCGTAACGTCCTATGCTTACATTTGTTTGCTGGCCTGGATTTGCATACCGGGCTGCTATTATTGCTTGCACTGGCTTTtgtg > 1:893780/1‑143 (MQ=255) tCACTTTGCCCGCGCCGCGAAAGTGACTGATCATGCGCCGCGTTCATGTCCTCAAAATGGCGTAACGTCCTATGCTTACATTTGTTTGCTGGCCTGGATTTGCATACCGGGCTGTTATTATTGCTTGCACTGGCTTTTGTGCt < 2:587935/143‑1 (MQ=255) tCACTTTGCCCGCGCCGCGAAAGTCACTGATAATGCGCCGCGTTCATGTCCTCAAAATGGCGTAACGTCCTATGCTTACATTTGGTTGCTGGCCTGGATTTGCATACCGGGCTGTTATTATTGCTTGCACTGGCTTTTGTGCt > 1:245372/1‑143 (MQ=255) aCTTTGCCCGCGCCGCGAAAGTCACTGATAATGCGCCGCGTTCATGTCCTCAAAATGGCGTAACGTCCTATGCTTACATTTGTTTGCTGGCCTGGATTTGCATACCGGGCTGTTATTATTGCTTGCACTGGCTTTTGTGCTGt > 1:561015/1‑143 (MQ=255) ctctcccccCGCCCCGAAAGTCACTGCTAATGCGCCGCGTTCATGTCCTCAAAATGGCGTAACGTCCTATGCTTACCTTTTTTTGCTAGCCTGCATTCGCATACCGGGCTGTTATTATTGCTTGCACTGGCTTTTGTGCTGtt < 2:512100/138‑1 (MQ=255) cgcgccgcgAAAGTCACTGATAATGCGCCGCGTTCATGTCCTCAAAATGGCGTAACGTCCTATGCTTACATTTGTTTGCTGGCCTGGATTTGCATACCGGGCTGTTATTATTGCTTGCACTGGCTTTTGTGCTGTTCTACGaa < 2:102925/143‑1 (MQ=255) cgcgccgcgAAAGTCACTGATAATGCGCCGCGTTCATGTACTCAAAATGGCGTAACGTCCTATGCTTACATTTGTTTGCTGGCCTGGATTTGCATACCGGGCTGTTATTATTGCTTGCACTGGCTTTTGTGCTGTTCTACGaa < 2:221279/143‑1 (MQ=255) gcgccgcgAAAGTCACTGATAATGCGCCGCGTTCATGTCCTCAAAATGGCGTAACGTCCTATGCTTACCTTTGTTTGCTGGCCTGGATTTGCATACCGGGCTGTTATTATTGCTTGCACTGGCTTTTGTGCTGTCCTACGAAg > 1:15491/1‑143 (MQ=255) cACTGATAATGCGCCGCGTTCATGTCCTCAAAATGGCGTAACGTCCTATGCTTACATTTGTTTGCTGGCCTGGATTTGCATACCGGGCTGTTATTATTGCTTGCACTGGCTTTTGTGCTGTTCTACGACGCCATCAATGGgtt > 1:621710/1‑143 (MQ=255) ggATCATGCGCCGCGTTCATGTCCTCAAAATGGCGTAACGTCCTATGCTTACATTTGTTTGCTGGCCTGGATTTGCATACCGGGCTGTTATTATTGCTTGCACTGGCTTTTGTGCTGTTCTACGAAGCCATCAATGGTTTCCa < 2:630055/142‑1 (MQ=255) gATAATGCGCCGCGTTCATGTCCTCAAAATGGCGTAACGTCCTATGCTTACATTTGTTTGCTGGCCTGGATTTGCATACCGGGCTGTTATTATTGCTTGCACTGGCTTTTGTGCTGTTCTACGAAGCCATCAATGGTTTCCAt < 2:14933/143‑1 (MQ=255) cgccgcGTTCCTGGCCTCAAAGTGGCGTAACGTCCTATGCTTACATTTGTTTGCTGGCCTGGATTTGCATACCGGGCTGTTATTATTGCTTGCACTGGCTTTTGTGCTGTTCTACGAAGCCATCAATGGTTTCCATGACACAg < 2:411381/143‑1 (MQ=255) tCATGTCCTCAAAATGGCGTAACGTCCTATGCTTACATTTGTTTGCTGGCCTGGATTTGCATACCGGGCTGTTATTATTGCTTGCACTGGCTTTTGTGCTGTTCTACGAAGCCATCAATGGTTTCCATGACACAGCCAACGcc > 2:431571/1‑143 (MQ=255) tGTCCTCAAAGTGGCGGAAGGTCGTGTGCGTACGTTGGGTTGCTGGCCTGGGTGTGCATACCGGGCTGTTATTATTGCTTGCACTGGCTTTGGTGCTGTTCTACGAAGCCATCAATGGTTTCCATGACACAGCCAACGCCGTg < 2:873564/143‑1 (MQ=255) tGTCCTCAAAATGGCGTAACGTCCTATGCTTACATTTGTTTGCTGGCCTGGATTTGCATACCGGGCTGTTATTATTGCTTGCACTGGCTTTTGTGCTGTTCTACGAAGCCATCAATGGTTTCCATGACACAGCCAACACCCTg > 2:773249/1‑143 (MQ=255) gTCCTCAAAATGGCGTAACGTCCTATGCTTACATTTGTTTGCTGGCCTGGATTTGCATACCGGGCTGTTATTATTGCTTGCACTGGCTTTTGTGCTGTTCTACGAAGCCATCAATGGTTTCCATGACACAGCCAACGCCGTgg < 1:128357/143‑1 (MQ=255) tGGCGTAACGTCCTATGCTTACATTTGTTTGCTGGCCTGGATTTGCATACCGGGCTGTTATTATTGCTTGCACTGGCTTTTGTGCTGTTCTACGAAGCCATCAATGGTTTCCATGACACAGCCAACGCCGTGGCAACCGTTAt < 2:561015/143‑1 (MQ=255) ggCGTAACGTCCTATGCTTACATTTGTTTGCTGGCCTGGATTTGCATCCCGGGCTGTTATTCTTGCTTGCACTGGCTTTTGTGCTGTTCTACGAAGCCATCAATGGTTTCCATGACACAGCCAACGCCGTGGCAACCGTTATc < 2:253906/143‑1 (MQ=255) cGTCCTATGCTTACATTTGTTTGCTGGCCTGGATTTGCATACCGGGCTGTTATTATTGCTTGCACTGGCTTTTGTGCTGTTCTACGAAGCCATCAATGGTTTCCATGACACAGCCAACGCCGTGGCAACCGTTATCTAGAcgc > 1:696892/1‑141 (MQ=255) cTATGCTTACATTTGTTTGCTGGCCTGGATTTGCATACCGGGCTGTTATTATTGCTTGCACTGGCTTTTGTGCTGTTCTACGAAGCCATCAATGGTTTCCATGACACAGCCAACGCCGTGGCAACCGTTATCTATACCcgcgc > 1:151951/1‑143 (MQ=255) | AATTATATAAGATAATTATTTTTTGAGTGAAATCCATACAGGGGGCAAATCAAAAAAAGTCTATATTTCACTTTGCCCGCGCCGCGAAAGTCACTGATAATGCGCCGCGTTCATGTCCTCAAAATGGCGTAACGTCCTATGC‑TACATTTGTTTGCTGGCCTGGATTTGCATACCGGGCTGTTATTATTGCTTGCACTGGCTTTTGTGCTGTTCTACGAAGCCATCAATGGTTTCCATGACACAGCCAACGCCGTGGCAACCGTTATCTATACCCGCGC > NC_000913/3637504‑3637781 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |