| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 572471 | 49 (1.000) | 16 (0.430) +TGATCTTACCCAGCAATAGTGGACACGCGGCTAA |
12/212 | 2.3 | 36.7% | coding (6/456 nt) | ybcN | DLP12 prophage; DNA base‑flipping protein |
| ? | NC_000913 | = 2170235 | 24 (0.490) | noncoding (65/1258 nt) | IS3 | repeat region | |||||
CACCGTGATATTTTTGGCGGTCATTAATCCTTCGGCGATAAGCATTGTCGTACTTCCGCTGTCGAGAATAACGGTCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCATTCGCCTGAATTTCGCAGTGAAGCCCTGAAGCTTGCTGAACGCATCGGTGTTACTGCCGCAGCCCGTGAACTCAGCCTGTATGAATCACAACTCTAC > NC_000913/2170095‑2170376 | aaacGTGATATCTTTGGCGGTCATTAATCCTTCGGCGATAAGCATTGTCGTACTTCCGCTGTCGAGAATAACGGTCCGATCTTACCCAGCAATAGTGGACACGCGGCTAACCGCCAAAACTCTCACTCAGAGGTGCcacacaa > 2:842488/4‑142 (MQ=37) ccGTGATATTTTTGGCGGTCATTAATCCTTCGGCGATAAGCATTGTCGTACTTCCGCTGTCGAGAATCACGGTCTGATCTTACCCAGCAATAGTGCACACGCGGCTAAGTGAGTAAGCTCACAATCAGAGGTGACTCACATgc > 2:586406/1‑142 (MQ=37) ccGTGATATTTTTGGCGGTCATTAATCCTTCGGCGATAAGCATTGTCGTACTTCCGCTGTCGAGAATAACGGTCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGa > 2:161320/1‑143 (MQ=255) tGATATGTTTGGCGGCCATTAATCCTTCGGCGATAAGCATTGTCGTACTTCCGCTGTCGAGACTAACGGTCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAACCCCTCAGTCAGAGGTcacacacaccgcgc > 2:631550/1‑137 (MQ=25) gATATTTTTGGCGGTCATTAATCCTGCGGCGATAAGCATTGTCGTACTTCCGCTGTCGAGAATAACGGTCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACaaa < 1:97125/143‑1 (MQ=255) tatTTCTGGCCGTCATTAATCCTGCGGCGATAAGCATTGTCGTACCTCCGCTGTCGAGAATAACGGTCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACaaaaa < 2:691654/143‑1 (MQ=255) gtgttGGCGGTCATTAATCCTTCGGCTATAAGCATTGTCATATTTTTGCTGTCGAGAATAACGGTCTTATCTTACCCAGCAATAGTGGACACGCGGCTAAGAGAGTAAACTCGCAGTCAGAGGTGACTCACATGACAAAAACa < 1:217235/140‑1 (MQ=21) tGGCGGTCATTAATCCTTCGGCGATAAGCATTGTCGTACTTCCGCTGTCGAGAATAACGGTCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTAt < 1:161320/143‑1 (MQ=255) ggTCATTAATCCTTCGGCGATAAGCATTGTCGTACTTCCTCTGTCGAGAATAACGGTCTGATCTTACCCAGCAATAGTGGACCCGCGGCTCAGTGCGTAAACTCTCAGTCAGAGGGGACTCACATGACAAAAACAGTATCagc > 2:836463/1‑141 (MQ=21) gTCATTAATCCTTCGGCGATAAGCATTGTCGTACTTCCGCTGTCGATAATAACTGTCTGATCTTACCCAGCAATAGTGGACACGAGGCTAAGTGAGTAAACGCTCAGTCAGAGGTGACTCACATGACACAAACAGTAACAAcc > 2:511236/1‑143 (MQ=21) aTTAATCCTTCGGCGATAAGCATTGTCGTACTTCCGCTGTCGAGAATAACGGTCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGt > 2:302095/1‑143 (MQ=255) aTTAATCCTTCGGCGATAAGCATTGTCGTACTTCCGCTGTCGAGAATAACGGTCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGt < 2:50587/143‑1 (MQ=255) ttAATCCTTCGGCGATAAGCATTGTCGTACTTCCGCTGTCGAGAATAACGGTCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTa > 1:671541/1‑143 (MQ=255) tAATCCTTCGGCGATAAGCATTGTCGTACTTCCGCTGTCGAGAATAACGGTCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTaa > 2:207805/1‑143 (MQ=255) cGGAGATAAGCTTTGTTGTACTTCCGCTGTCGAGAATAACGGTCTGATCTTAACCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAAcccc < 2:699527/143‑1 (MQ=255) tCGTACTTCCGGTGGCGAGAATAACGGTCTGATCTTACCCGCCAGGAGGGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGAGGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCATTCGc < 2:147296/143‑1 (MQ=14) tCGTACTTCCGCTGTCGAGAATAACGGTCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGCGTACACTCTCAGTCAGAGGTGCCTCACATGCCAAAAAGAGTATCAACCAGTAAAAAACCCCGTAAACAGCATTCGc > 1:99277/1‑143 (MQ=17) tCGTACTTCCGCTGTCGAGAATAACGGTCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGAAAACTCTCAGTCAGAGGTGACTCACATGACACAAACAGTAGCAACCAGTACACAACCCCGTAACCAGCATTCGc > 1:96423/1‑143 (MQ=17) tACTTCCGCTGTCGAGAATAACGGTCTGATCTTACCCAGCACTAGTGGACACGCGGCTAAGTGAGAAAAATCTCAGTCAGAGGTGTCTAACGTGTCAACAACACTATCAACCATTAAAAAACTCCGTAAGCAGCATTCGCCTg > 2:270772/1‑143 (MQ=17) tACTTCCGCTGTCGAGAATAACGGTCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCATTCGCCTg > 1:70950/1‑143 (MQ=255) cGCCGTCGAGAATAACGGTCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCATTCGCCTGAATTTc < 1:725141/143‑1 (MQ=255) tCGAGAATAACGGTCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCATTCGCCTGAATTTCGCAGt > 1:639279/1‑143 (MQ=40) gagaATAACGGTCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCATTCGCCTGAATTTCGCAGTGa < 1:302095/143‑1 (MQ=38) gTCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCATTCGCCTGAATTTCGCAGTGAAGCCCTGAAg > 1:130528/1‑143 (MQ=11) ggCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACttagccgcgtgtccactattgctgggtaagatcagttcacgcttcccctccgcagaggtcaaacgctagatgcaaagaattgcaggtgcatttctgcctctctgaa < 2:567710‑M2/143‑107 (MQ=255) ggCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACttagccgcgtgtccactattgctgggtaagatcagttcacgcttcccctccgcagaggtcaaacgctagatgcaaagaattgcaggtgcatttctacatctgtgac < 2:168881‑M2/143‑107 (MQ=255) gCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACttagccgcgtgtccactattgctgggtaagatcagttcacgcttcccctccgcagaggtcaaacgctagatgcaaagaattgcaggtgcatttctgcatctgtgaag < 1:151865‑M2/143‑108 (MQ=255) gCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACttagccgcgtgtccactattgctgggtaagatcagttcacgcttcccctccgcagaggtcaaacgctagatgcaaagaattgcaggtgcatttctgcatctgtgaag < 1:146695‑M2/143‑108 (MQ=255) cTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACttagccgcgtgtccactattgctgggtaggatcagttcacgcttcccctccgcagaggtcaaacgctagatgcaaagacttgcaggtgcatttctgcatcggtgacag < 2:74184‑M2/143‑109 (MQ=255) cTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACttagccgcgtgtccactattgctgggtaagatcagttcacgcttcccctccgcagaggtcaaacgctagatgcaaagaattgcaggtgcatttctgcacctgtgaagg < 1:485890‑M2/143‑109 (MQ=255) tAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACttagccgcgtgtccactattgctgggtaagatcagttcacgcttcccctccgcagaggtcaaacgctagatccaaagaatcgcaggtgcatttctgcatctgtgaaggc < 2:370979‑M2/143‑110 (MQ=255) gAGTAAACTCTCAGTCAGAGGTGACTCACttagccgcgtgtccactattgctgggtaagatcagttcacgcttcccctccgcagaggtcaaacgctagatgcaaagaattgcaggtgcatttctgcatctgtgaagggagaag < 2:711897‑M2/143‑115 (MQ=255) aGTAAACTCTCAGTCAGAGGTGACTCACttagccgcgtgtccactattgctgggtaagatcagttcacgcttcccctccgcagaggtcaaacgctagatgcaaagaattgcaggtgcattgctgcatctgtgcagggagaaga < 2:761666‑M2/143‑116 (MQ=255) aaCTCTCAGTCAGAGGTGACTCACttagccgcgtgtccactattgctgggtaagatcagttcacgcttcccctccgcagaggtcaaacgctagctgcaaagaattgcaggtgcatttctgcatctgtgaagggagaagcgagc < 1:614122‑M2/143‑120 (MQ=255) ctctCAGTCAGAGGTGACTCACttagccgcgtgtccactattgctgggtaagatcagttcacgcttcccctccgcagaggtcaaacgctagatgcaaagaattgcaggtgcatttctgcatctgtgaagggagaagcgagttt < 1:298419‑M2/143‑122 (MQ=255) gagagcTGACTCACttagccgcgtgtccactattgctgggtaagatcagttcacgcttcccctccgcaggggtcaaccgctagatgcaaagaattgcaggtgcatttctgcatctgtgaagggagaagagagtttggattgta > 1:568638‑M2/2‑14 (MQ=255) cTCACttagccgcgtgtccactattgctgggtaagatcagttcacgcttcccctccgcagaggtcaaacgctagatgcaaagaattgcaggtgcatttctgcatctgtgaagggagaagagagtttggattgtatgtgggcgt < 1:100353‑M2/143‑139 (MQ=255) tCACttagccgcgtgtccactattgctgggtaagatcagttcacgcttcccctccgcagaggtcaaacgctcgatgcaaagaattgcaggtgcatttctgcaactgtgaagggagaagcgagtctggattgtatgtgcgctta < 2:287720‑M2/143‑140 (MQ=255) tCACttagccgcgtgtccactattgctgggtaagatcagttcacgcttcccctccgcagaggtcaaacgctagatgcaaagagttgcaggtgcatttctgaatctgtgaagggagaagagagctgggagtgtatgtacgaatg < 2:437188‑M2/143‑140 (MQ=255) aCttagccgcgtgtccactattgctgggtaagatcagttcacgcttcccctccgcagaggtcaaacgctagatgcaaagaattgcaggtgcatttctgcatctgtgaagggagaagagagggtggattgtatgtgctcatcaa < 2:533951‑M2/143‑142 (MQ=255) | CACCGTGATATTTTTGGCGGTCATTAATCCTTCGGCGATAAGCATTGTCGTACTTCCGCTGTCGAGAATAACGGTCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCATTCGCCTGAATTTCGCAGTGAAGCCCTGAAGCTTGCTGAACGCATCGGTGTTACTGCCGCAGCCCGTGAACTCAGCCTGTATGAATCACAACTCTAC > NC_000913/2170095‑2170376 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |