| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 2472469 | 55 (1.160) | 3 (0.060) | 3/258 | NT | 5.2% | coding (413/495 nt) | yfdN | CPS‑53 (KpLE1) prophage; protein YzyA |
| ? | NC_000913 | = 2472503 | 55 (1.190) | coding (379/495 nt) | yfdN | CPS‑53 (KpLE1) prophage; protein YzyA | |||||
CTGGTTTGTTCCGCAGCTCCACCAGCGCCTGGCAATATTTATTACTCATTAAGCCCCCACGTAATTCCCTGAGAGATACCACTCTTCACCTGATGCAGCCCGCTTACTGCTTTTCCGTAAACACCGTTCACGACGCGCCAGAAAATTGTTTCGTTCTGGCTGGGAGTGGCTTTCACGGAATGCCGCCATCCACACCGTTGCAGCACGACGGTATAAGCCCCTGGACTCCAGTTCTTCCGCCTGGCGGGTCAGGCACAAAATCACCCGCGGGTC > NC_000913/2472339‑2472611 | cTGGTTTGTTCCGCAGCTCCACCAGCGCCTGGCAATATTTATTACTCATTAAGCCCCCACGTAATTCCCTGAGAGATACCACTCTTCACCTGATGCAGCCCGCTTACTGCTTTTCCGTAAACACCGTTCACGACGCGCCAGaa > 1:308284/1‑143 (MQ=255) ggTTTGTTCCGCAGCTCCACCAGCGCCTGGCAATATTTATTACTCATTAAGCCCCCACGTAATTCCCTGAGAGATACCACTCTTCACCTGATGCAGCCCGCTTACTGCTTTTCCGTAAACACCGTTCACGACGCGCCAGaaaa < 2:737463/143‑1 (MQ=255) gTTTGTTCCGCAGCTCCACCAGCGCCTGGCAATATTTATTACTCATTAAGCCCCCACGTAATTCCCTGAGAGATACCACTCTTCCAATACCCGAGCCCGCTTACTGCTTTTCCGTAAACACCGTTCACGACGCGCCAGAAAAt > 1:935961/1‑143 (MQ=255) ttGTTCCGCAGCTCCACCAGCGCCTGGCAATATTTAGTACTCATTAAGCCCCCACGTAATTCCCTGAGAGATACGACTCTGCACCTGATGCAGCCCGCTTACTGCTTTTCCGTAAACACCGTTCACGCCGCGCCAgcacagtg > 1:697241/1‑136 (MQ=255) ccGCAGCTCCACCGGCGCCTGGCAATATTTATTACTCATTAAGCCCCCACGTAATTCCCTGAGAGATACCACTCTTCACCTGATGCAGCCCGCTTACTGCTTTTCCGTAAACACCGTTCACGACGCGCCAGAAAATTGTTTCg < 1:922169/143‑1 (MQ=255) cTCCACCAGCGCCTGGCAATATTTATTACTCATTAAGCCCCCACGTAATTCCCTGAGAGATACCACTCTTCACCTGATGCAGCCCGCTTACTGCTTTTCCGTAAACACCGTTCACGACGCGCCAGAAAATTGTTTCGTTctgg < 1:703208/143‑1 (MQ=255) caccaGCGCCTGGCAATATTTATTACTCATTAAGCCCCCACGTAATTCCCTGAGAGATACCACTCTTCACCTGATGCAGCCCGCTTACTGCTTTTCCGTAAACACCGTTCACGACGCGCCAGACACTTCTTTCGTTctcgctg > 1:447487/1‑143 (MQ=255) caGCGCCTGGCAATATTTATTACTCATTAAGCCCCCACGTAATTCCCTAAGAGATACCACTCTTCACCTGATGCAGCCCGCTTACTGCTTTTCCGTAAACACCGTTCACGACGCGCCAGAAAATTGTTTCGTTCTGGCTGGGa > 2:787118/1‑143 (MQ=255) aGCGCCTGGCAATATTTATTACTCATTAAGCCCCCACGTAATTCCCTGAGAGATACCACTCTTCACCTGATGCAGCCCGCTTACTGCTTTTCCGTAAACACCGTTCACGACGCGCCCGAAAATTGTTTCGTTCTAGCTGGGAg < 2:481755‑M2/143‑2 (MQ=255) gcgcCTGGCAATATTTATTACTCATTAAGCCCCCACGTAATTCCCTGAGAGATACCACTCTTCACCTGATGCAGCCCGCTTACTGCTTTTCCGTAAACACCGTTCACtcccagccagaacgaaacaattttctggcgcgtcgt < 2:858896‑M1/143‑37 (MQ=255) cgggCAATATTTATTACTCATTAAGCCCCCACGTAATTCCCTGAGAGATACCACTCTTCACCTGATGCAGCCCGCTTACTGCTTTTCCGTAAACACCGTTCACGACGCGCCAGAAAATTGTTTCGTTCTGGCTGGGAGTGGCt < 2:436394/141‑1 (MQ=255) cAATATTTATTACTCATTAAGCCCCCACGTAATTCCCTGAGAGATACCACTCTTCACCTGATGCAGCCCGCTTACTGCTTTTCCGTAAACACCGTTCACGACGCGCCAGAAAATTGTTTCGTTCTGGCTGGGAGTGGCTTTCa < 1:593532/143‑1 (MQ=255) cAAGATTTATTACTCATTAAGCCCCCACGTAATTCCCTGAGAGATACCACGCTTCACCTGATGCAGCCCGCTTACTGCTTTTCCGTAAACACCGTTCACGACGCGCCAGAAAATTGTTTCGTTCTGGCTGGGAGTGGCTTTCa < 1:588145/143‑1 (MQ=255) aagatgtattaCTCATTAAGCCCCCACGTAATTCCCTGAGAGATACCACTCTTCACCTGATGCAGCCCGCTTACTGCTTTTCCGTAAACACCGTTCACGACGCGCCAGAAAATTGTTTCGTTCTGGCTGGGAGTGGCTTTCAc < 1:750114/137‑1 (MQ=255) atatTTATTACTCATTAAGCCCCCACGTAATTCCCTGAGAGATACCACTCTTCACCTGATGCAGCCCGCTTACTGCTTTTCCGTAAACACCGTTCACGACGCGCCAGAAAATTGTTTCGTTCTGGCTGGGAGTGGCTTTCACg < 1:108738/143‑1 (MQ=255) ttaCTCATTAGGCCCCCGCGTGATTCCCTGAGCGATACCCCTCCTCTCCTGATGCAGCCCGCTTACTGCTTTTCCGTAAGCACCGTTCACGACGCGCCAGAAAATTGTGTCGTTCTGGCTGGGAGTGGCTTTCACGGAATgcc < 2:865587/143‑1 (MQ=255) gCCCCCGCGTGATTCCCTGAGAGATACCGCTCTTCACCTGATGCAGCCCGCTTACTGCTTTTCCGTAAACACCGTTCACGACGCGCCAGAAAATTGTTTCGTTCTGGCTGGGAGTGGCTTTCACGGAATGCCGCCATCCacac < 1:677036/143‑1 (MQ=255) ccccACGTAATTCCCTGAGAGATACCACTCTTCACCTGATGCAGCCCGCTTACTGCTTTTCCGTAAACACCGTTCACGACGCGCCAGAAAATTGTTTCGTTCTGGCTGGGAGTGGCTTCCACGGAATGCCGCCATCCACACCg > 2:208672/1‑143 (MQ=255) cGTCATTCCCTGGGAGATCCCACTGCTCACCTGATGCGGCCCGCTTACTGCTTTTCCGTAAACACCGTGCGCGACGCGCCAGAAAATTGTTTCGTTCTGGCTGGGAGTGGCTTTCACGGAATGCCGCCATCCACACCGTTgca < 2:728901/143‑1 (MQ=255) gTAATTCCCTGAGAGATACCACTCTTCACCTGATGCAGCCCGCTTACTACTTTTCCGTAAACACCGTTCACGACGCGCCAGAAAATTGTTTCGTTCTGGCTGGGAGTGGCTTTCACGGAATGCCGCCATCCACACCGTTgcag < 1:838688/143‑1 (MQ=255) aaTTCCCTGAGAGATACCACTCTTCACCTGATGCAGCCCGCTTACTGCTTTTCCGTAAACACCGTTCACGACGCGCCAGAAAATTGTTTCGTTCTGGCTGGGAGTGGCTTTCACGGAATGCCGCCATCCACACCGTTgcagca < 2:308284/143‑1 (MQ=255) aTTCCCTGAGTGATGCCACTCTTCACCTGATGCAGCCCGCTTACTGCTTTTCCGGAGACACCGTTCACGACGCGCCAGAAAATTGTTTCGTTCTGGCTGGGAGTGGCTTTCACGGAATGCCGCCATCCACACCGTTGCAGCac < 2:613668/143‑1 (MQ=255) ttCCCTGAGAGATACCACTCTTCACCTGATGCAGCCCGCTTACTGCTTTTCCGTAAACACCGTTCACGACGCGCCAGAAAATTGTTTCGTTCTGGCTGGGAGTGGCTTTCCCGGAATGCCGCCCCACACAACGTTGCGGGacg > 1:343273/1‑143 (MQ=255) gccTGAGGGCTACCTCTCTTCACCGGATGCAGCCCGCTTACTGCTTTTCCGTAAACACCGTTCACGACGCGCCAGAAAATTGTTTCGGTCTGGCTGGGAGTGGCTTTCACGGAATGCCGCCATCCACACCGTTGCAGCacgac < 1:754068/142‑1 (MQ=255) cccTGAGAGATACCACCCTCCACCTGATGCATCCCCCTCACTTCTTTCCCGTAAACACCGTTCTCGCCGCGCCAGAAAATTGTTTCGTTCTGGCTGGTAGCGTCTGTCTCGGAATGCCGCCATCCTCACCGTTGCAGCacgac < 2:16570/143‑1 (MQ=255) ccTGAGAGATACCACTCTTCACCTGATGCAGCCCGCTTACTGCTTTTCCGTAAACACCGTTCACGACGCGCCAGAAAATTGTTTCGTTCTGGCTGGGAGTGGCTTTCAGGGAATGCGGCCATCCGCACCGTTGCAGCacgccg > 1:781428/1‑143 (MQ=255) ccTGAGAGATACCACTCTTCACCTGATGCAGCCCGCTTACTGCTTGTCCGTAAACACCGTTCACGACGCGCCAGAAAATTGTTTCGTTCTGGCTGGGAGTGGCTTTCACGGAATGCCGCCATCCACACCGTTGCAGCacgacg < 1:305035/143‑1 (MQ=255) ccTGAGAGATACCACTCTGCACCTGATGCAGCCCGCTTACTGCTTTTCCGTAAACACCGTTCACGACGCGCCAGAAAATTGTTTCGTTCTGGCTGGGAGTGGCTTTCACGGAATGCCGCCATCCACACCGTTGCAGCacgacg < 1:415421/143‑1 (MQ=255) cTGAGAGATACCACTCTTCACCTGATGCAGCCCGCTTACTGCTTTTCCGTAAACACCGTTCACGACGCGCCAGAAAATTGTTTCGTTCTGGCTGGGCGTGGCTTTCACGGAATGCCGCCATCCACACCGTTGCACCGcggcgg > 2:607486/1‑143 (MQ=255) tGAGAGATACGACTCTTCACCTGATGCAGCCCGCTTACTGCTATTCCGTAAACACCGTTCACGACGCGCCAGAAAATTGTTTCGTTCTGGCTGGGAGTGGACTTCACGGAATGCCGCCATCAAAAGCGGTGCAGCACGACAGt > 2:242824/1‑143 (MQ=255) tGAGAGATACCACTCTTCACCTGATGCAGCCCGCTTACTGCTTTTCCGTAAACACCGTTCACGACGCGCCAGAAAATTGTTTCGTTCTGGCTGGGAGTGGCTTTCACGGAATGCCGCCATCCACACCGTTGCAGCACGACGGt > 1:795805/1‑143 (MQ=255) gagagaTACCACTCTTCACCGGATGCAGCCCGCTTACTGCTTTTCCGTAAACACCGTTCACGACGCGCCAGAAAATTGTTTCGTTCTGGCTGGGAGTGGCTTTCACGGAATGCCGCCATCCACACCGTTGCAGCACGACGGta < 1:247189/143‑1 (MQ=255) ttACCACTCTTCACCTGTGGCAGTCCGCTTACTGCTTTTCCGTGAACCCCGTCCACGACGCTCCTGAAAAAGCTTTCGTTCTGGCTGGGAGTGGCTTTCACGGAATGCCCCCATCCACACCGTTGCAGCACGACGGTATAAGc < 2:509538/142‑1 (MQ=255) aCCACTCTTCACCTGATGCAGCCCGCTTACTGCTTTTCCGTAAACACCGTTCACGACGCGCCAGAAAATTGTTTCGTTCTGGCTGGGAGTGGCTTTCACGGAATGCCGCCATCCACACCGTTGCAGCACGACGGTATAAGccc > 1:693289/1‑143 (MQ=255) ccctctTCCCCGTATGCAGCCCGCTTACTGCTTTTCCGTAACCACCCTTCACGACGCGCCAGAAAATTGTTTCGTTCTGGCTTCGAGTGGCTTTCACGGAATGCCGCCATCCACACCGTTGCAGCACGACGGTATAAGCCCCt < 1:371273/141‑1 (MQ=255) cACTCTTCACCTGATGCAGCCCGCTTACTGCTTTTCCGTAAACACCATTCACGACGCGCCAGAAAATTGTTTCGTTCTGGCTGGGAGTGGCTTTCACGGAATGCCGCCATCCACACCGTTGCCGCACGACGGTATAAGCCCCt > 1:338498/1‑143 (MQ=255) tctTCACCTGATGCAGCCCGCTTACTGCTGTTCCGTAGACACCGTTCACGGCGCGCCGGAAAATTGTTTCGTTCTGGCTGGGCGGGGCCTTCGCGGAATGCCGGCATCCACACCGTTGCAGCACGACGGTGTAAGCCCCTGGa > 2:182387/1‑143 (MQ=255) tCACCTGATGCAGCCCGCTTACTGCTTTTCCGTAAACACCGTTCACtcccagccagaacgaaacaattttctggcgcgtcgtgaacggt > 1:84544‑M1/1‑46 (MQ=255) tCACCTGATGCAGCCCGCTTACTGCTTTTCCGTAAACACCGTTCACtcccagccagaacgaaacaattttctggcgcgtcgtgaacggt < 2:84544‑M1/89‑44 (MQ=255) aCCTGATGCAGCCCGCTTACTGCTTTTCCGTAAACACCGTTCACGACGCGCCAGAAAATTGTTTCGTTCTGGCTGGGAGTGGCTTTCACGGAATGCCGCCATCCACACCGTTGCAGCACGACGGTATAAGCCCCTGGACTCCa < 2:803908/143‑1 (MQ=255) tGATGCAGCCCGCTTACTGCTTTTCCGTAAACACCGTTCACGACGCGCCAGAAAATTGTTTCGTTCTGGCTGGGAGTGGCTTTCACGGAATGCCGCCATCCCCACCGTTGCAGCACGACGGTATAAGCCCCTGGACTCGAGtt > 1:289722/1‑143 (MQ=255) aTGCAGCCCGCTTACTGCTTTTCCGTAAACACCGTTCACGACGCGCCAGAAAATTGTTTCGTTCTGGCTGGGAGTGGCTTTCACGGAATGCCGCCATCCACACCGTTGCAGCACGACGGTATCAGCCCCTGGACTCCAGttct > 1:321652/1‑143 (MQ=255) cAGCCCGCTTACTGCTTTTCCGTCAACACCGTTCACGACGCGCCAGAAAATTGTTTCGTTCTGGCTGGGAGTGGCTTTCACGGAATGCCGCCATCCACACCGTTGCAGCACGACGGTATAAGCCCCTGGACTCCAGTTCTTcc < 1:768379/143‑1 (MQ=255) aGCCCGCTTACTGCTTTTCCGTAAACACCGTTCACGACGCGCCAGAAAATTGTTTCGTTCTGGCTGGGAGTGGCTTTCACGGAATGCCGCCATCCACACCGTTGCAGCACGACGGTATCAGCCCCTGGACCCCAGTTCTTCCg > 2:340065/1‑143 (MQ=255) aGCCCGCGTACTGCTTTTCCGTAAACACCGTTCACGACGCGCCAGAAAATTGTTTCGTTCTGGCTGGGAGTGGCTTTCACGGAATGCCGCCATCCACACCGTTGCAGCACGACGGTATAAGCCCCTGGACTCCAGTTCTTCCg < 1:608228/143‑1 (MQ=255) ccGCTTCCTGGTTTTCCGTGACCCCCGTGCGCGGCGCGCCAGAAAATTGTTTCGTTCTGGCTGGGAGTGGCTTTCACGGAATGCCGCCATCCACTCCGTTGCAGCACGACGGTATAAGCCCCTGGACTCCAGTTCTTCCGCCt < 2:53072/143‑1 (MQ=255) ccGCTTACTGCTTTTCCGTAAACACCGTTCACGACGCGCCAGAAAATTGTTTCGTTCTGGCTGGGAGTGGCTTTCACGGAATGCCGCCATCCACACCGTTGCAGCACGACGGTATAAGCCCCTGGACTCCAGTTCTTCCGCCt > 1:164639/1‑143 (MQ=255) ccGCTTACTGCTGTTCCGTAAACACCGTTCACGACGCGCCAGAAAATTGTTTCGTTCTGGCTGGGAGTGGCTTTCACGGAATGCCGCCATCCACACCGTTGCAGCACGACGGTATAAGCCCCTGGACTCCAGTTCTTCCGCCt < 1:72226/143‑1 (MQ=255) cTTCCTGCTTTTCCGTCAGCACCGTTCACGACGCGCCAGAAAATTGTTTCGTTCTGGCTGGGAGTGGCTTTCACGGAATGCCGCCATCCACACCGTTGCAGCACGACGGTATAAGCCCCTGGACTCCAGTTCTTCCGCCTGGc < 2:697241/143‑1 (MQ=255) cTGCTTTTCCGTAAACACCGTTCACGACGCGCCAGAAAATTGTTTCGTTCTGGCTGGGAGTGGCTTTCACGGAATGCCGCCATCCACACCGTTGCAGCACGACGGTATACGCCCCTGGACTCCCGTTCTTCCGCCTGGCgaga > 1:361428/1‑140 (MQ=255) ttttCCGTAAACACCGTTCACGACGCGCCAGAAAATTGTTTCGTTCTTGCTGGGAGTGGCTTTCACGGAATGCCGCCATCCACACCGTTGCAGCACGACGGTATAAGCCCCTGGACTCCAGTTCTTCCGCCTGGCGGGTCAgg > 1:902962/1‑143 (MQ=255) tttCCGTAAACACCGTTCACGACGCGCCAGAAAATTGTTTCGTTCTGGCTGGGCGTTGCTTTCACGGAATGCCGCCATCCACACCGTTGCAGCACGACGGTATCAGCCCCTGGACTCCAGTTCTTCCGCCTGGCGGGTCCGGc > 1:176308/1‑143 (MQ=255) tttCCGTAAACACCGTTCACGACGCGCCAGAAAATTGTTTCGTTCTGGCTGGGAGTGGCTTTCACGGAATGCCGCCATCCACACCGTTGCAGCACGACGGTATAAGCCCCTGGACTCCAGTTCTTCCGCCTGGCGGGGCAGGc > 2:7767/1‑143 (MQ=255) ttctggcaaCCCCGTTCACGACGCGCCATAAAATTGTTTCGTTCTGGCTGCGAGTGGCTTTCACGGAATGCCGCCATCCCCACCGTTGCAGCACGACGGTATAAGCCCCTGGCCTCCAGTTCTTCCGCCTGGCGGGTCAGGca < 1:41378/136‑1 (MQ=255) ccGTAAACACCGTTCACGACGCGCCAGAAAATTGTTTCGTTCTGGCTGGGAGTGGCTTTCACGGAATGCCGCCATCCACACAGTTGGAGCACGACGGTATAAGCACCTGGACTCCAGTTCTTGCGCGTGGCGGGTGCGGcaca > 1:478527/1‑143 (MQ=255) cGTAAACACCGTTCACGACGCGCCAGAAACTTGTTTCGTTCTGGCTGGGAGTGGCTTCCACGGAATGCCGCCCTCCACACCGATGCAGCACGACCGAAAAAGCCCCAGGACTCCAGTTCCTCCGCCCCCCGGCTCACGcacac > 2:161141/1‑142 (MQ=255) gTAAACACCGTTCACGACGCGCCAGAAAATTGTTTCGTTCTGGCTGGGAGTGGCTTTCACGGAATGCCACCATCCACACCGTTGCAGCACGAAGGTATAAGCGCCTGGACTCCAGTTCTTCCGACTGGCGGGTCAGGCACaaa > 2:3287/1‑143 (MQ=255) tAAACACCGTTCACGACGCGCCAGAAAATTGTTTCGTTCTGGCTGGGAGTGGCTTTCACGGAATGCCGCCATCCACACCGTTGCAGCACGACGGTATAAGCCCCTGGACTCCAGTTCTTCCGCCTGGCGGGTCAGGCACaaaa < 1:809715/143‑1 (MQ=255) aaaCACCGTTCACGACGCGCCAGAAAATTGTTTCGTTCTGGCTGGGAGTGGCTTTCACGGAATGCCGCCATCCACACCGTTGCAGCACGACGGTATAAGCCCCTGGACTCCAGTTCTTCCGCCTGGCGCGTCAGGCACaaact > 1:75244/1‑141 (MQ=255) acCGTTCACGACGCGCCAGAAAATTGTTTCGTTCTGGCTGGGAgtgaacggtgtttacggaaaagcagtaagcgggctgcatcaggtga > 1:84544‑M2/1‑43 (MQ=255) acCGTTCACGACGCGCCAGAAAATTGTTTCGTTCTGGCTGGGAgtgaacggtgtttacggaaaagcagtaagcgggctgcatcaggtga < 2:84544‑M2/89‑47 (MQ=255) cACGACGCGCCAGAAAATTGTTTCGTTCTGGCTGGGAGTGGCTTTCACGGAATGCCGCCATCCACACCGTTGCAGCACGACGGTATAAGCAGTGGTTCTCCAGTGCTTCCGCCTGGCGGGTCAGGCACAAAATCACCCGCggg < 2:201046/143‑1 (MQ=255) acgacgCGCCAGAAAATTGTTTCGTTCTGGCTGGGAgtgaacggtgtttacggaaaagcagtaagcgggctgcatcaggtgaagagtggtatctctcagggaattacgtgggggcttaatgagtaataaatattgccaggcgc < 2:858896‑M2/143‑108 (MQ=255) acgacgCGCCAGAAAATTGTTTCGTTCTGGCTGGGAGTGGCTTTCACGGAATGCCGCCATCCACACCGTTGCAGCACGACGGTATAAGCGCCTGGACTCCAGTTCTTCCGCCTGGCGGGTCAGGCACAAAATCACCCGCgggc > 2:397801/1‑142 (MQ=255) ctcccagctagaacgaaacaattttcgggcgcgtcgtgaacggtgtttacggaaaagcagtaagcgggctgcatcaggtgaagagtggtatctctcagggaattacgtgggggcttaatgagtaataaatattgccaggcgct < 2:481755‑M1/143‑143 (MQ=255) | CTGGTTTGTTCCGCAGCTCCACCAGCGCCTGGCAATATTTATTACTCATTAAGCCCCCACGTAATTCCCTGAGAGATACCACTCTTCACCTGATGCAGCCCGCTTACTGCTTTTCCGTAAACACCGTTCACGACGCGCCAGAAAATTGTTTCGTTCTGGCTGGGAGTGGCTTTCACGGAATGCCGCCATCCACACCGTTGCAGCACGACGGTATAAGCCCCTGGACTCCAGTTCTTCCGCCTGGCGGGTCAGGCACAAAATCACCCGCGGGTC > NC_000913/2472339‑2472611 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |