| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 3341848 | 29 (0.610) | 4 (0.090) | 4/252 | NT | 12.4% | coding (583/987 nt) | kdsD | D‑arabinose 5‑phosphate isomerase KdsD |
| ? | NC_000913 | = 3341856 | 29 (0.640) | coding (591/987 nt) | kdsD | D‑arabinose 5‑phosphate isomerase KdsD | |||||
GTAGCGAAAGAAGCCTGTCCGTTAGGGCTGGCACCGACCAGCAGCACCACCGCCACGCTGGTTATGGGCGATGCCCTCGCTGTCGCGCTGTTAAAAGCACGCGGCTTTACTGCTGAAGATTTTGCGCTCTCACACCCAGGCGGCGCACTGGGTCGTAAACTTCTGCTGCGCGTAAACGATATTATGCATACGGGCGATGAGATCCCGCATGTTAAGAAAACGGCCAGTCTGCGTGACGCGTTGCTGGAAGTTACCCGCAAAAATCTTGGTATGACTGTCA > NC_000913/3341710‑3341989 | gTAGCCAAAGAAGCCTGTCCGTTAGGGCTGCCACCGACCAGCAGCACCACCGCCACGCTGGTTATGGGCGATGCCCTCGCTGTCGCGCTGTTAAAAGCACGCGGCTTTACTGCTGAAGATTTTGCGCTCTCACACCCAggcgg < 2:344631/143‑1 (MQ=255) gacgCCTGCCCGTTAGGGCTGGCACCGACCAGCAGCACCACCGCCACGCTGGTTATGGGCGATGCCCTCGCTGTCGCGCTGTTAAAAGCACGCGGCTTTACTGCTGAAGATTTTGCGCTCTCACACCCAGGCGGCGCACTggg < 2:506381/140‑1 (MQ=255) agCGTGTCCGTTGGGGCTGGCACCGACCAGCAGCACCACCGCCACGCTGGTTATGGGCGATGCCCTCGCTGTCGCGCTGTTAAAAGCACGCGGCTTTACTGCTGAAGATTTTGCGCTCTCACACCCAGGCGGCGCACTGGGTc < 2:140429/143‑1 (MQ=255) agCCTGTCCGTTAGGGCTGGCACCGACCAGCAGCACCACCGCCACGCTGGTTATGGGCGATGCCCTCGCTGTCGCGCTGTTAAAAGCACGCGGCTTTACTGCTGAAGATTTTGCGCTCTCACACCCAGtgcgccgcctgggtg < 2:41028‑M1/143‑16 (MQ=255) agCCTGTCCGTTAGGGCTGGCACCGACCAGCAGCACCACCGCCACGCTGGTTATGGGCGATGCCCTCGCTGTCGCGCTGTTAAAAGCACGCGGCTTTACTGCTGAAGATTTTGCGCTCTCACACCCAGGCGGCGCACTGGGTc < 1:525545/143‑1 (MQ=255) gTCCGTTAGGTCTGGCACCGTCCAGCAGCATCACCGCCACGCTGGTTATGGGCGATGCCCTCGCTGTCGCGCTGTTAAAAGCACGCGGCTTTACTGCTGAAGATTTTGCGCTCTCACACCCAGGCGGCGCACTGGGTCGTaaa < 1:563498/143‑1 (MQ=255) gTCCGTTAGGGCTGGCACCGACCAGCAGCACCACCGCCACGCTGGTTATGGGCGATGCCCTCGCTGTCGCGCTGTTAAAAGCACGCGGCTTTACTGCTGAAGATTTTGCGCTCTCACACCCAGtgcgccgcctgggtgtgaga < 1:154670‑M1/143‑21 (MQ=255) ttAGGGCTGGCACCGACCAGCAGCACCACCGCCACGCTGGTTATGGGCGATGCCCTCGCTGTCGCGCGGTTAAAAGCACGCGGCTTTACTGCTGAAGATTTTGCGCTCTCACACCCAGGCGGCGCACTGGGTCGTAAACTTct > 1:515313/1‑143 (MQ=255) gtGGCCCCGACCAGCAGCACCACCGCCACGATGGTCTGCTTCTTTGCCCTCGCTGTCGCGCTGTTAAAAGCACGCGGCTTTACTGCTGAAGATTTTGCGCTCTCACACCCAGGCGGCGCACTGGGTCGTAAACTTCTGCTgcg < 2:913744/142‑1 (MQ=255) tGGCACCGACCAGCAGCACCACCGCCACGCTGGTTATGGGCGATGCCCTCGCTGTCGCGCTGTTAAAAGCACGCGGCTTTACTGCTGAAGATTTTGCGCTCTCACACCCAGGCGGCGCCCCGGCCCGTAAACTTCTGCTgcgc > 1:346130/1‑143 (MQ=255) aCCGACCAGCCGCACCACGGCCACGCTGGTTATGGGCGATGCCCTCGCTGTCGCGCTGTTAAAAGCACGCGGCTTTACTGCTGAAGATTTTGCGCTCTCACACCCAGGCGGCGCACTGGGTCGTAAACTTCTGCTGCGCGTaa < 2:682232/143‑1 (MQ=255) ccGACCAGCAGCACCACCGCCACGCTGGTTATGGGCGATGCCCTCGCTGTCGCGCTGTTAAAAGCACGCGGCTTTACTGCTGAAGATTTTGCGCTCTCACACCCAGGCGGCGCACTGGGTCGTAAACTTCTGCTGCGCGTaaa < 1:885567/143‑1 (MQ=255) cGACCAGCAGCACCACCGCCACGCTGGTTATGGGCGATGCCCTCGCTGTCGCGCTGTTAAAAGCACGCGGCTTTACTGCTGAAGATTTTGCGCTCTCACACCCAGGCGGCGCACTGGGTCGTAAACTTCTGCTGCGCGTAAAc < 1:244291/143‑1 (MQ=255) gACCAGCAGCACCACCGCCACGCTGGTTATGGGCGATGCCCTCGCTGTCGCGCTGTTAAAAGCACGCGGCTTTACTGCTGAAGATTTTGCGCTCTCACACCCAGGCGGCGCACTGGGTCGTAAACTTCTGCTGCGCGTAAACg > 1:915492/1‑143 (MQ=255) ccAGCAGCACCACCGCCACGCTGGTTATGGGCGATGCCCTCGCTGTCGCGCTGTCAACAGCACGCGGCTTTACTGCTGAAGATTTTGCGCTCTCACACCCAGGCGGCGCACTGGGTCGTAAACTTCTGCTGCGCGTAACCgct > 2:165869/1‑141 (MQ=255) caccGCCACGCTGGTTATGGGCGATGCCCTCGCTGTCGCGCTGTTAAAAGCACGCGGCTTTACTGCTGAAGATTTTGCGCTCTCACACCCAGGCGGCGCACTGGGTCGTAAACTTCTGCTGCGCGTAAACGATATTATGCAtc > 1:147051/1‑142 (MQ=255) accGCCACGCTGGTTATGGGCGATGCCCTCGCTGTCGCGCTGTTAAAAGCACGCGGCTTTACTGCTGAAGATTTTGCGCTCTCACACCCAGGCGGCGCACTGGGTCGTAAACTTCTGCTGCGCGAAACCGACCTTCTGCacac > 2:447619/1‑143 (MQ=255) gCCACGCTGGTTATGGGCGATGCCCTCGCTGTCGCGCTGTTAAAAGCACGCGGCTTTACTGCTGAAGATTTTGCGCTCTCACACCCAGGCGGCGCACTGGGTCGTAAACTTCTGCTGCGCGTAAACGATATTATGCATACggg < 1:107000/143‑1 (MQ=255) gtgaTGGGCGATGCCCTCGCTGTCGCGCTGTTAAAAGCACGCGGCTTTACTGCTGAAGATTTTGCGCTCTCACACCCAGGCGGCGCACTGGGTCGTAAACTTCTGCTGCGCGTAAACGATATTATGCATACGGGCGATGAGAt < 1:330953/140‑1 (MQ=255) gTTATGGGCGATGCCCTCGCTGTCGCGCTGTTAAAAGCACGCGGCTTTACTGCTGAAGATTTTGCGCTCTCACACCCAGGCGGCGCACCGGGTCGTAAACTTCTGCTGCGCGTAAACGATAGTATGCATACGGGCGACgagac > 2:630719/1‑142 (MQ=255) ggCGATGCCCTCGCTGTCGCGCTGTTACAAGCACGCGGCTTTACTGCTGAAGATTTTGCGCTCCCACACCCAGGGGGCGCACTGGGTCGTAAACTTCTGCTGCGCGTAAACGATATTATGCATACGGGCGATGAGATCCCGCa < 1:843865/143‑1 (MQ=255) ccTCGCTGTCGCGCTGTTAAAAGCACGCGGCTTTACTGCTGAAGGTTTTGCGCTCTCACACCCAGGCGGCGCACTGGGTCGTAAACTTCTGCTGCGCGTAAACGATATTATGCATACGGGCGATGAGACCCCGCATGTTAAGa > 2:178600/1‑143 (MQ=255) gcgcTGTTAAAAGCACGCGGCTTTACTGCTGAAGATTTTGCGCTCTCACACCCAGtgcgccgcctgggtgtg > 1:724135‑M1/1‑55 (MQ=255) gcgcTGTTAAAAGCACGCGGCTTTACTGCTGAAGATTTTGCGCTCTCACACCCAGtgcgccgcctgggtgtg < 2:724135‑M1/72‑18 (MQ=255) gTTAAAAGCCGGCGGCTTTCCTGCTGAAGATTTTGCGCTCTCGCACCCAGGCGGCGCACTGGGTCGTAAGCTTCTGCTGCGCGTAAACGATATTATGCATACGGGCGATGAGATCCCGCATGTTAAGAAAACGGCCAGTCTGc < 2:556386/143‑1 (MQ=255) ttAAAAGCACGCGGCTTTACTGCTGAAGATTTTGCGCTCTCACACCCAGGCGGCGCACTGGGTCGTAAACTTCTGCTGCGCGTAAACGATATTATGCATACGGGCGATGAGATCCCGCATGTTAAGAAAACGGCCAGTCTGCg > 1:878521/1‑143 (MQ=255) aaaGCACGCGGCTTTACTGCTGAAGATTTTGCGCTCTCACACCCAGGCGGCGCACTGGGTCGTAAACTTCTGCTGCGCGTAAACGATATTATGCATACGGGCGATGAGCTCCCGCATGTTAAGACAACGGCCAGTCTGCGTGa > 1:14856/1‑143 (MQ=255) aCGCGGCTTTACTGCTGAAGATTTTGCGCTCTCACACCCAGGCGGCGCACTGGGTCGTAAGCTTCTGCTGCGCGTAAACGATATTATGCATACAGGCGATGAGTTCCGGCGTGTTAAGAAAGCGGCCAGTCTGCGTGCCGCGt > 1:429419/1‑143 (MQ=255) gcgGCTTTACTGCTGAAGATTTTGCGCTCTCACACCCAGGCGGCGCACTGGGTCGTAAACTTCTGCTGCGCGTAAACGATATTATGCATACGGGCGATGAGATCCCGCATGTTAAGAACACGGCCAGTCTGCGTGACGCGTTg > 1:27292/1‑143 (MQ=255) ggCTTTACTGCTGAAGATTTTGCGCTCTCACCCCCAGGCGGCGCACTGGGTCGTAAACTTCTGCTGCGCGTAAACGATATTATGCATACGGGCGATGAGATCCCGCATGTTAAGAAAACGGCCAGTCTGCGTGACGCGTTGCt < 1:642849/143‑1 (MQ=255) gctgAAGATTGTGCGCTCTCACACCCAGGCGGCGCACGGGGTCGTAAACTTCTGCTGCGCGTAAACGATATTATGCAGACGGGCGATGAGATCCCGCATGTTAAGAAAACGGCCAGTCTGCGTGACGCGTTGCTGGAAGTTAc < 1:716422/143‑1 (MQ=255) gAAGATTTTGCGCTCTCACACCCAGGCGGCGCACTGGGTCGTAAACTTCTGCTGCGCGTAAACGATATTATGCATACGGGCGATGAGATCCCGCATGTTAAGAAAGCGGCATGTCGGCGTGACGCGGTGCTGGAAGTTACCCg > 1:252511/1‑143 (MQ=255) tttGCGCTCTCACACCCAGGCGGCGCACTGGGTCGTAAACTTCTGCTGCGCGTAAACGATATTATGCATACGGGCGATGAGATCCCGCATGTTAAGAAAACGGCCAGTCTGCGTGACGCGTTGCTGGAAGTTACCCGCaaaaa > 1:423961/1‑143 (MQ=255) tctcACACCCAGGCGGCGCActgggtgtgagagcgcaaaatcttcagcagtaaagccgcgtgcttttaacagcgcgacagcgagggcatcgcccataaccagcgtggcggtggtgctgctggtcggtgccagccctaacggac < 1:154670‑M2/143‑124 (MQ=255) cacaCCCAGGCGGCGCActgggtgtgagagcgcaaaatcttcagcagtaaagccgcgtgcttttaacagcgc > 1:724135‑M2/1‑17 (MQ=255) cacaCCCAGGCGGCGCActgggtgtgagagcgcaaaatcttcagcagtaaagccgcgtgcttttaacagcgc < 2:724135‑M2/72‑56 (MQ=255) cacCCAGGCGGCGCActgggtgtgagagcgcaaaatcttcagcagtaaagccgcgtgcttttaacagcgcgacagcgagggcatcgcccataaccagcgtggcggtggtgctgctggtcggtgccagccctaacggacaggct < 2:41028‑M2/143‑129 (MQ=255) cacCCAGGCGGCGCACTGGGTCGTAAACTTCTGCTGCGCGTAAACGATATTATGCATACGGGCGATGAGATCCCGCATGTTAAGAAAACGGCCAGTCTGCGTGACGCGTTGCTGGAAGTTACCCGCAAAAACCTTGGCATGAc > 2:776774/1‑143 (MQ=255) ccAGGCGGCGCACTGGGTCGTAAACTTCTGCTGCGCGTAAACGATATTATGCATACGGGCGATGAGATCCCGCATGTTAAGAAAACGGCCAGTCTGCGTGACGCGTTGCTGGAAGTTACCCGCAAAAATCTTGGTATGACtct > 2:188218/1‑141 (MQ=255) aGGCGGCGCACTGGGTCGTAAACTTCTGCTGCGCGTAAACGATATTATGCATACGGGCGATGAGATCCCGCATGGTAAGAAAACGGCCAGTCTGCGTGACGCGTTGCTGGAAGTTACCCGCACAAATCCTGGTATGACTGTCa > 2:206376/1‑143 (MQ=255) | GTAGCGAAAGAAGCCTGTCCGTTAGGGCTGGCACCGACCAGCAGCACCACCGCCACGCTGGTTATGGGCGATGCCCTCGCTGTCGCGCTGTTAAAAGCACGCGGCTTTACTGCTGAAGATTTTGCGCTCTCACACCCAGGCGGCGCACTGGGTCGTAAACTTCTGCTGCGCGTAAACGATATTATGCATACGGGCGATGAGATCCCGCATGTTAAGAAAACGGCCAGTCTGCGTGACGCGTTGCTGGAAGTTACCCGCAAAAATCTTGGTATGACTGTCA > NC_000913/3341710‑3341989 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |