New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 566777 =NA (NA)2112 (44.970) 251/262 NT 97.7% noncoding (1/1258 nt) IS3 repeat region
?NC_000913 = 572471 49 (1.040)coding (6/456 nt) ybcN DLP12 prophage; DNA base‑flipping protein

Only 100 of 2395 total aligned reads displayed.

GAACAACTCCGGTGACTTCTGCGCTAAACGGGGACGTTTATGCGCACATACAATCCAAACTCTCTTCTCCCTTCACAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACCTCTCACAAGACGGCATCAAATTACATCGCGGCAACTTCACCGCTATCGGTCGGCAGATCCAGCCTTATCTGGAGGAGGGCAAATGCTTTCGCATGGTGCTTAAACCGTGGCGTGAGAAACGCAGTCTTTCCCAGAATGCA  >  NC_000913/572329‑572612
                                                                                                                                              |                                                                                                                                             
 aacaacTCCGGTGACTTCTGCGCTAAACGGGGACGTTTATGCGCACATACAATCCAAACTCTCTTCTCCCTTCACAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACt                                                                                                                                              >  1:708468‑M2/1‑142 (MQ=255)
   cgactcCGGTGGCTTCTGCGCTAATCGGGGACGTTTATGCGCACATACAATCCAAACTCTCTTCTCCCTTCACAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGAAACACCTCAGCGTAGGGGAAGCGTGAACtga                                                                                                                                            >  2:826886‑M2/3‑140 (MQ=255)
   caacTCCGGTGACTTCTGCGCTAAACGGGGACGTTTATGCGCACATACAATCCAAACTCTCTTCTCCCTTCACAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACtga                                                                                                                                            >  2:695965‑M2/1‑140 (MQ=255)
   caacCCCGGTGACTTCTGCGCTAAACGGGGACGTTTATGCGCACATACAATCCAAACTCTCTTCTCCCTTCACAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACtga                                                                                                                                            >  2:718800‑M2/1‑140 (MQ=255)
    acctcCGGTGGCTTCTGCGATAAACGGGGACGTTTATGCGCACATACAATCCAAACTCTCTTCTCCCTTCACAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACtgat                                                                                                                                           >  2:54949‑M2/3‑139 (MQ=255)
    aacTCCGGTGACTTCTGCGCTAAACGGGGACGTTTATGCGCACATACAATCCAAACTCTCTTCTCCCTTCACAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACtgat                                                                                                                                           >  1:448488‑M2/1‑139 (MQ=255)
    aacTCCGGTGACTTCTGCGCTAAACGGGGACGTTTATGCGCACATACAATCCAAACTCTCTTCTCCCTTCACAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACtgat                                                                                                                                           >  1:739032‑M2/1‑139 (MQ=255)
      cttcgttgacTTCTGCGCTAAACTGGGACTTTTATGCGCACATTCAATCCAAACTCTCTTCTCCCTTCACAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACCTCTca                                                                                                                                         <  2:46827‑M2/133‑1 (MQ=255)
       tCCGGTGACTTCTGCGCTAAACGGGGACGTTTATGCGCACATACAATCCAAACTCTCTTCTCCCTTCACAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACtgatctt                                                                                                                                        <  1:155339‑M2/143‑8 (MQ=255)
         cGGTGACTTCTGCGCTAAACGGGGACGTTTATGCGCACATACAATCCAAACTCTCTTCTCCCTTCACAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACtgatcttac                                                                                                                                      <  1:519558‑M2/143‑10 (MQ=255)
            tGACCTCTGCGGTAAGCGGGGACGGTTATGCGCACATACAATCCAAACTCTCTTCTCCCTTCACAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACtgatcttaccca                                                                                                                                   >  2:253589‑M2/1‑131 (MQ=255)
                ttCTGCGCTAAACGGGGACGTTTATGCGCACATACAATCCAAACTCTCTTCTCCCTTCACAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACtgatcttacccagcaa                                                                                                                               <  1:38653‑M2/143‑17 (MQ=255)
                ttCTGCGCTAAACGGGGACGTTTATGCGCACATACAATCCAAACTCTCTTCTCCCTTCACAGATGCAGAAATGCACCTGCAATTCTTTGAATCTAGCGTTTGACCTCTGCGGAGCGGAAGCATGCACtcatcttacccagcaa                                                                                                                               <  2:326765‑M2/143‑17 (MQ=255)
                  cTGCGCTAAACGGGGACGTTTATGCGCACATACAATCCAAACTCTCTTCTCCCTTCACAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACtgatcttacccagcaata                                                                                                                             >  2:288753‑M2/1‑125 (MQ=255)
                  cTGCGCTAAACGGGGACGTTTATGCGCACATACAATCCAAACTCTCTTCTCCCTTCACAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTCGACCTCTGCGGAGGGGAAGCGTGAACtgatcttacccagcaata                                                                                                                             <  1:141063‑M2/143‑19 (MQ=255)
                   tGCGCTAAACGGGGACGTTTATGCGCACATACAATCCAAACTCTCTTCTCCCTTGACAGATGAAGAGATGGGCCTGCAATTCTTTGCATCTAGCGTTTGGCCTCTGCGGAGGGGAAGCGTGGACtggtgttacgcagcaagag                                                                                                                            <  1:28950‑M2/143‑20 (MQ=255)
                   tGCGCTAAACGGGGACGTTTATGCGCACATACAATCCAAACTCTCTTCTCCCTTCACAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACtgatcttacccagcaatag                                                                                                                            <  1:327711‑M2/143‑20 (MQ=255)
                    gcgcTAAACGGGGACGTTTATGCGCACATACAATCCAAACTCTCTTCTCCCTTCACAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACCTCTCACAAGACGGCATCaa                                                                                                                           >  1:22229/1‑143 (MQ=255)
                      gcTAAACGGGGACGTTTATGCGCACATACAATCCAGACTCTCTTCTCCCTTCACAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACtgatcttacccagcaatagtgg                                                                                                                         <  2:672503‑M2/143‑23 (MQ=255)
                      gcTAAACGGGGACGTTTATGCGCACATACAATCCAAACTCTCTTCTCCCTTCACAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACtgatcttacccagcaatagtgg                                                                                                                         >  1:63334‑M2/1‑121 (MQ=255)
                       cTAAACGGGGACGTTTATGCGCACATACAATCCAAACTCTCTTCTCCCTTCACAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACtgatcttacccagcaatagtgga                                                                                                                        <  2:26883‑M2/143‑24 (MQ=255)
                          aaCGGGGACGTTTATGCGCACATACAATCCAAACTCTCTTCTCCCTTCACAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGATGGGAAGCGTGAACtgatcttacccagcaatagtggacac                                                                                                                     <  1:891371‑M2/143‑27 (MQ=255)
                          aaCGGGGACGTTTATGCGCACATACAATCCAAACTATCTTCTCCTTTCACAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACtgagcttacccagcaatagtggacac                                                                                                                     <  2:922654‑M2/143‑27 (MQ=255)
                              gggACGTTTATGCGCACATACAATCCAAACTCTCTTCTCCCTTCACAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACtgatcttacccagcaatagtggacacgcgg                                                                                                                 <  1:491095‑M2/143‑31 (MQ=255)
                              gggACGTTTATGCGCACATACAATCCAAACTCTCTTCTCCCTTCACAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACtgatcttacccagcaatagtggacacgcgg                                                                                                                 <  2:747400‑M2/143‑31 (MQ=255)
                              gggACGTTTATGCGCACAAACACTCCAACCTCTCGCGTCCCTGCACAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACtgatcttacccagcaatagtggacacgcgg                                                                                                                 >  2:193362‑M2/1‑113 (MQ=255)
                                cacGTTTATGCGCACATACACTCCAAACTCTCTTCTCCCTTCACAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGTGAAGCGTGAACtgatcttacccagcaatagtggacacgcggct                                                                                                               >  1:919404‑M2/2‑111 (MQ=255)
                                  cGTTTATGCGCACATACAATCCAACCGCTCCGCTCCCTTCACAGATGCAGAAATGCACCTGCAATTCTTTTCATCTAGCGTTTGACCTCTTCTGAGGGGAAGCGTGAACtgatcttacccagcaatagtggacacgcggctaa                                                                                                             >  1:274465‑M2/1‑109 (MQ=255)
                                   ttggatgcgCACATACAATCCAAACTCTCTTCTCCCTTCACAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACtgatcttacccagcaatagtggacacgcggctaag                                                                                                            >  1:677934‑M2/5‑108 (MQ=255)
                                   gTTTATGCGCACATACAATCCAAACTCTCTTCTCCCTTCACAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACtgatcttaccccgcagtagtggacacgcggctaag                                                                                                            <  1:786789‑M2/143‑36 (MQ=255)
                                    tttATGCGCACATACAATCCATACTCTCTTCTCCCTTCACAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTGTGCGGAGGGGAAGCGTGAACtgatcttacccagcaatagtggacacgcggctaagt                                                                                                           >  2:163076‑M2/1‑107 (MQ=255)
                                         gcgcACATACAATCAAAACTCTCTTCTCCCTTCACAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGGGAACtgatcataccaagcaatagtggacacgcggcgaagtgggta                                                                                                      <  2:429063‑M2/143‑42 (MQ=255)
                                         gcgcACATACAAGCCAACCTCTCTTCCCCCTTCACAGATGCAGAAATGCACCTGCAATTCTTTTCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACtgatcttacccagcaatagtggacacgcggctaagtgagta                                                                                                      >  2:338752‑M2/1‑102 (MQ=255)
                                             acaTACAATCCCACCTCCCTTCTCCCTTCACAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACtgatcttacccagcaatagtggacacgcggctaagtgagtaaact                                                                                                  >  1:359619‑M2/1‑98 (MQ=255)
                                             acaTACAATCCAAACTCTCTTCTCCCTTCACAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACtgatcttacccagcaatagtggacacgcggctaagtgagtaaact                                                                                                  >  1:769104‑M2/1‑98 (MQ=255)
                                              caTACAATCCAAACTCTTTTCTCCCTTCACAGATGCAGAAGTGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCAGCGGAGGGGAAGCGTGAACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactc                                                                                                 >  2:620002‑M2/1‑97 (MQ=255)
                                                tACAATCCAAACTCTCTTCTCCCTTCACAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGACGCGTGCACtgatcttacccagcaatagcggacacgcggctaagtgcgtaaactctc                                                                                               <  2:72962‑M2/143‑49 (MQ=255)
                                                  cAATCCATACTCCCTTCGCCCTTCACCGATGCAGAAATGCACCTGCGATTCTTTGCATCTAGCGTTTGCCCTCTGCGGAGGGGAAGCGTGAACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcag                                                                                             >  1:4161‑M2/1‑93 (MQ=255)
                                                     tCCAAACTCTCTTCTCCCTTCACAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCCTATGACCTCTGCGGAGGGGAAGCGTGACCtgatcttacccagcaatagtgggcacgcggctaagtgagtaacctcccagtca                                                                                          <  1:187330‑M2/143‑54 (MQ=255)
                                                       cAAACTCTCTTCTCCCTTCACAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTTACCTCTGCGGACGGGTAGCGCGCCCtcaccttacccagcaatagtgcacacgcagctaagtgagtaacctctcattcaaa                                                                                        <  1:622041‑M2/143‑56 (MQ=255)
                                                        caacTCTCTTCTCCCTTCACAGGTGCGGAAGTGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagag                                                                                       >  1:167938‑M2/2‑87 (MQ=255)
                                                        aaaCTCTCTTCTCCCTTCACAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagag                                                                                       <  1:821712‑M2/143‑57 (MQ=255)
                                                        aaaCTCTCTTCCACCTTCACAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagag                                                                                       >  1:345608‑M2/1‑87 (MQ=255)
                                                            tctctTCTCCCTTCACAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagaggtga                                                                                   >  2:392439‑M2/1‑83 (MQ=255)
                                                            tctctTCTCCCGTCACAGATGCAGAAATGCACCTGCAATTCTGTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagaggtga                                                                                   >  2:761114‑M2/1‑83 (MQ=255)
                                                             ctcgTCTCCCTTCACAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagaggtgac                                                                                  >  2:121907‑M2/1‑82 (MQ=255)
                                                              tcttctCCCTTCACAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACtgatcttacccagcaatagtggacacgcgggtacgtgggtaaacccccagtcagaggcggcc                                                                                 <  2:149434‑M2/143‑63 (MQ=255)
                                                              tcttctCCCTTCACAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagaggtgact                                                                                 >  2:803477‑M2/1‑81 (MQ=255)
                                                              tcttctCCCTTCACAGACGCAGCAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACtgatcgtacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagaggtgact                                                                                 >  1:100728‑M2/1‑81 (MQ=255)
                                                                ttctCCCTTCACAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACtgatcttacccagcaatagtggacacgcggctaagcgagtaaaccctcagtcagaggtgactca                                                                               <  2:536409‑M2/143‑65 (MQ=255)
                                                                    cccTTCACAGAGGCAGAAATGCACCTGCAATGCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACtgatcttaccccgcaagagtggacacgcggctaggtgaggaaactcccagtcaggggtgccgcacacg                                                                           <  1:237954‑M2/143‑69 (MQ=255)
                                                                      cTTCACAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGACGCGTGAACtaatcatacacagaaatagtggacacgcggctaagtgagtaaactctcagtcagaggtgactcacatgac                                                                         <  1:200904‑M2/143‑71 (MQ=255)
                                                                      cTTCACAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagaggtgactcacatgac                                                                         <  1:852310‑M2/143‑71 (MQ=255)
                                                                       ttCACAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagaggtgactcacatgaca                                                                        <  1:90559‑M2/143‑72 (MQ=255)
                                                                       ttCACAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagaggtgactcacatgaca                                                                        >  1:58033‑M2/1‑72 (MQ=255)
                                                                          acaGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACtgatcttacccagcactagtggacacgcggctaagtgagtaaactctcagtcagaggtgacacacatgacaaga                                                                     <  2:878251‑M2/143‑75 (MQ=255)
                                                                            ggaTGCAGAAAGGCACCAGCAATTCTTTGCAGCTAGCGGTTGACCTCGGGGGAGGAGAAGCGTGAACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagaggtgactcacatgacaaaaac                                                                   >  2:503156‑M2/2‑67 (MQ=255)
                                                                             gATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagaggtgactcacatgacaaaaaca                                                                  >  2:571128‑M2/1‑66 (MQ=255)
                                                                             gATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGAGAAGCGGGAACtgatcttacccagcaatagtggacacgcggctaagcgaggaaactctcagtcagaggtgactcacatgacaaaaaca                                                                  <  1:87246‑M2/143‑78 (MQ=255)
                                                                               tGCAGAAATGCAGCTGCGATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagaggtgactcacatgacaaaaacagt                                                                >  2:486451‑M2/1‑64 (MQ=255)
                                                                                  aGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagaggtgactcacatgacaaaaacagtatc                                                             >  2:448726‑M2/1‑61 (MQ=255)
                                                                                     aaTGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagaggtgactcacatgacaaaaacagtatcaac                                                          >  1:50631‑M2/1‑58 (MQ=255)
                                                                                       tGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagaggtgactcacatgacaaaaacagtatcaacca                                                        <  1:803431‑M2/143‑88 (MQ=255)
                                                                                         cACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagaggtgactcacatgacaaaaacagtatcaaccagt                                                      >  1:465242‑M2/1‑54 (MQ=255)
                                                                                           ccTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagaggtgactcacatgacaaaaacagtatcaaccagtaa                                                    <  1:480765‑M2/143‑92 (MQ=255)
                                                                                             tGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagaggtgactcacatgacaaaaacagtatcaaccagtaaaa                                                  <  2:647880‑M2/143‑94 (MQ=255)
                                                                                                   tCTTTGCATCTAGCGCTTGACCTCTGCGGAGGGGAAGCGTGAACtgatcttacccagcaatagtggacacgcggctaagtgagtgaactctcagtcagaggtgactcacaggacaaaaacagtatcaaccagtaaaaaacccc                                            <  2:78352‑M2/143‑100 (MQ=255)
                                                                                                   gctTTGGAGCTAGCGTTTGGCCTCTGCGGAGGGGAAGCGTGAACtgatcttacccagcaatagtggacacgcggcaaagtgaggaaactctcaggcagaggtgactcacatgacaaaaacagtatcaaccagtaaaaaacccc                                            >  2:376110‑M2/2‑44 (MQ=255)
                                                                                                    cTTTGCATTTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagaggtgactcacatgacaaaaacagtatcaaccagtaaaaaaccccg                                           >  2:100096‑M2/1‑43 (MQ=255)
                                                                                                    cTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagaggtgactcacatgacaaaaacagtatcaaccagtaaaaaaccccg                                           >  1:403357‑M2/1‑43 (MQ=255)
                                                                                                          aTCTAGCGTTTGACCGCTGCGGAGGGGAAGCGTGAACtgatcttacccagcaatagtggacacgcggctaagtgagtaaattctcagtcagaggtgactcacatgacaaaaacagtatcaaccagtaaaaaaccccgtaaaca                                     >  1:594072‑M2/1‑37 (MQ=255)
                                                                                                           tCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagaggtgactcacatgacaaaaacagtatcaacccgtaaaaaaccccgtaaacca                                    <  2:899210‑M2/143‑108 (MQ=255)
                                                                                                           tCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagaggtgactcacatgacaaaaacagtatcaaccagtaaaaaaccccgtaaacag                                    >  1:263490‑M2/1‑36 (MQ=255)
                                                                                                            cTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagaggggactcacatgacagaaacagtatcaaccagtaaaaaaccccgtaaacagc                                   <  1:532832‑M2/143‑109 (MQ=255)
                                                                                                            cTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACtgatcttacccagcaatagtggacacgcggctaagtgagcaaactctcagtcagagggacctcacctgacaaaaacagtatcaaccagcaacaaaccccataaacagc                                   <  2:583787‑M2/143‑109 (MQ=255)
                                                                                                             tAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagaggtgactcacatgacaaaaacagtatcaaccagtaaaaaaccccgtaaacagca                                  <  1:692317‑M2/143‑110 (MQ=255)
                                                                                                             tAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagaggtgactcacatgacaaaaacagtatcaaccagtaaaaaaccccgtaaacagca                                  <  1:564274‑M2/143‑110 (MQ=255)
                                                                                                                  tttGACCTCTGCGGAGGGGAAGCGTGAACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagaggtgactcacatgacaaaaacagtatcaaccagtaaaaaaccccgtaaacagcattcgc                             <  1:608296‑M2/143‑115 (MQ=255)
                                                                                                                  tttGACCTCGGCGGAGGGGAAGCGGGAACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagaggtgactcacatgacaaaaacagtatcaaccagtaaaaaaccccgtaaacagcattcgc                             >  2:36161‑M2/1‑29 (MQ=255)
                                                                                                                  attgACCTCTGCGGAGGGGAAGCGTGAACtgatcttgcccagcaatagtggacacgcggctaagtgagtaaactctcagtcagaggtgactcacatgacaaaaacagtatcaaccagtaaaaaaccccgtaaactgcattcgc                             >  1:661918‑M2/2‑29 (MQ=255)
                                                                                                                       ccTCTGCGGGGGGGAAGCGTGAACttatcttacccagcaatagtggacccgcggctaagcgagtaaactctcagtcagaggtgactcacatgacaaaaacagtatcaaccagtaaaaaaccccgtaaacagcattcgccccat                        >  2:308390‑M2/1‑24 (MQ=255)
                                                                                                                       ccTCGGCGGAGGGGAGGCGGGAAGtgatctgagccagcaatactggacacgcggctaagtgagtaaactctcagtcagaggtgactcacatgacaaaaacagtatcaaccagtaaaaaaccccgtaaacagcattcgcctgaa                        >  2:406821‑M2/1‑24 (MQ=255)
                                                                                                                        ctctGCGGAGGGGAAGCGTGAACtgatcttacccagcaatagtggaaacgcggctaagtgagtaaactctcagtcagaggtgactcacatgacaaaaacagtatcaaccagtaaaaaacaccgtaaacagcattcgcctgact                       <  2:177567‑M2/143‑121 (MQ=255)
                                                                                                                          ctGCGGAGGGGAAGCGTGAACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagaggtgactcacatgacaaaaacagtatcaaccagtaaaaaaccccgtaaacagcattcgcctgcattt                     <  1:372078‑M2/143‑123 (MQ=255)
                                                                                                                             cGGAGGGGAAGCGTGAACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagaggtgactcacatgacaaaaacagtatcaaccagtaaaaaaccccgtaaacagcattcgcctaaatttcac                  <  2:598127‑M2/143‑126 (MQ=255)
                                                                                                                             cGGAGGGGAAGCGTGAACtgatcttacacagcaataggggacacgcggctaagtgagtaaactctcagtcagaggtgactcacatgacaaaaacagtatcaaccagtaaaaaaccccgtaaacagcattcgcctgaatttcgc                  >  2:214949‑M2/1‑18 (MQ=255)
                                                                                                                              ggAGGGGAAGCGTGAACtgatcttacccagcaatagtggacacgcggctaagtgagtaacctctcagtcggaggtgactcacatgacaacaacagtatcaaccggtaacaaaccccgtaaccagccttcgcccgcctttcgcc                 <  1:543820‑M2/143‑127 (MQ=255)
                                                                                                                              ggAGGGGAAGCGTGAACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagaggtgactcacatgacaaaaacagtatcaaccagtaaaaaaccccgtaaacagcattcgcctgaatttcgca                 >  2:847426‑M2/1‑17 (MQ=255)
                                                                                                                              ggAGGGGAAGCGTGAACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagaggtgactcacatgacaaaaacagtatcaaccagtaaaaaaccccgtaaacagcattcgcctgaatttcgca                 >  1:722912‑M2/1‑17 (MQ=255)
                                                                                                                               gAGGGGAAGCGTGAACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagaggtgactcacatgacaaaaacagtatcaaccagtaaaaaaccccgtaaacagcattcgcctgaatttcgcag                <  1:650105‑M2/143‑128 (MQ=255)
                                                                                                                                 ggggAAGCGTGAACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagaggtgactcacatgacaaaaacagtatcaaccagtaaaaaaaccagtaaacagcattcgcctgaatttcgcagtg              <  1:128012‑M2/143‑130 (MQ=255)
                                                                                                                                  gggAAGCGTGAACtgatcttccccagaaagattgttgtctcggctaagtgactaaactctcagtcagaggtgactcacatgacaaaaacagtatcaaccagtaaaaaaccccgtaaacagcattcgcctgaatttcgcagtga             >  1:30296‑M2/1‑13 (MQ=255)
                                                                                                                                  gggAAGCGTGAACtgatcgcacccaggaatagtggacacgcggctaagtgagtaaactctcagtcagaggtgactcacatgacaaaaacagtatcaaccagtaaaaaaccccgtaaacagcattcgcctgaatttcgcagtga             >  2:519960‑M2/1‑13 (MQ=255)
                                                                                                                                     aaGCGTGAACtgatcttacccagcaatagtggacacgcggcgaagtgagtaaactctcagtcagaggtgactcacatgacaaaaacagtatcaaccagtaaaaaaccccgtaaacagcattcgcctgaatttcgcagtgaagc          >  1:429462‑M2/1‑10 (MQ=255)
                                                                                                                                         gTGAACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagaggtgactcacatgacaaaaacagtatcaaccagtaaaaaaccccgtaaacagcattcgcctgaatttcgcagtgaagccctg      >  1:253442‑M2/1‑6 (MQ=255)
                                                                                                                                          tGAACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagaggtgactcacatgacaaaaacagtatcaaccagtaaaaaaccccgtaaacagcattcgcctgaatttcgcagtggagcactga     <  1:315732‑M2/143‑139 (MQ=255)
                                                                                                                                          tGAACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagaggtgactcacatgacaaaaacagtatcaaccagtaaaaaaccccgtaaacagcattcgcctgaatttcgcagtgaagccctga     <  1:750625‑M2/143‑139 (MQ=255)
                                                                                                                                          tGAACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagaggtgactcacatgacaaaaacagtatcaaccagtaaaaaaccccgtaaacagcatccgcccgaatctcgcagctaagccctgc     <  1:836100‑M2/143‑139 (MQ=255)
                                                                                                                                           gAACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagaggtgactcacatgacaaaaacagtatcaaccagtaaaaaaccccgtaaacagcattcgcctgaatttcgcagtgaagccctgaa    >  1:114990‑M2/1‑4 (MQ=255)
                                                                                                                                             aCtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagcggtgacgcacatgacaaaaacagtatcaaccagtaaaaaaccccgtaaacagcattcgcctgaatttcgcagtgaagccctgaagc  >  1:938679‑M2/1‑2 (MQ=255)
                                                                                                                                              |                                                                                                                                             
GAACAACTCCGGTGACTTCTGCGCTAAACGGGGACGTTTATGCGCACATACAATCCAAACTCTCTTCTCCCTTCACAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACCTCTCACAAGACGGCATCAAATTACATCGCGGCAACTTCACCGCTATCGGTCGGCAGATCCAGCCTTATCTGGAGGAGGGCAAATGCTTTCGCATGGTGCTTAAACCGTGGCGTGAGAAACGCAGTCTTTCCCAGAATGCA  >  NC_000913/572329‑572612

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.