New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 3036329	46 (0.970)	5 (0.110)	5/250	NT	10.3%	intergenic (‑47/+44)	prfB/recJ	peptide chain release factor RF2/ssDNA‑specific exonuclease RecJ
	?	NC_000913	= 3036346	44 (0.980)					intergenic (‑64/+27)	prfB/recJ	peptide chain release factor RF2/ssDNA‑specific exonuclease RecJ

TCAAAGATACCCCCTAAGAACGTCGGAGCGTTCCGTGAGGTCCTGAATGCGATTATTTACCGGATTAATTTCAAACATGGTCTGATTTCTTTTATTGAGCTAGTCAAAATGCGGTGATAAGAGCGGGATTGTACCCAATCCACGCTCTTTTTTATAGAGAAGATGACGCTAAATTGGCCAGATATTGTCGATGATAATTTGCAGGCTGCGGTTGCCGCGAAACTCGTTGATATCGAGCTTATAAGCCAGTTGCACTTCGCGCACGCCGTTATCCGGCCAGAGGG  >  NC_000913/3036205‑3036488                                                                                                                                              |                                                                                                                                               tCAAAGACACCTCCTAAGCACGGCGGAGCGTTCCTTGAGGTCCTGCATGCGATTATTTACCGGATTAATTTCATACTTGGTCTGATTTCTTTTATTGTGCTCGTCACAATGCGGTGATAAGAGCGGAATTGTACCCAATCCAc                                                                                                                                               <  1:484404/143‑1 (MQ=255)   aaaGATACCCCCTAAGAACGTCGGAGCGTTCCGTGAGGTCCTGAATGCGATTATTTACCGGATTAATTTCAAACATGGTCTGATTTCTTTTATTGAGCTAGTCAAAATGCGGTGATAAGAGCGGGATTGTACCCAATCCAcgc                                                                                                                                             <  1:862724‑M2/143‑4 (MQ=255)   aaaGATACCCCCTAAGAACGTCGGAGCGTTCCGTGAGGTCCTGAATGCGATTATTTACCGGATTAATTTCAAACATGGTCTGATTTCTTTTATTGAGCTAGTCAAAATGCGGTGATAAGAGCGGGATTGTACCCAATCCAcgc                                                                                                                                             <  1:309774‑M2/143‑4 (MQ=255)    aaGATACCCCCTAAGAACGTCGGAGCGTTCCGTGAGGTCCTGAATGCGATTATTTACCGGATTAATTTCAAACATGGTCTGATTTCTTTTATTGAGCTAGTCAAAATGCGGTGATAAGAGCGGGATTGTACCCAATCCAcgct                                                                                                                                            >  1:754078‑M2/1‑139 (MQ=255)      gATACCCCCTAAGAACGTCGGAGCGTTCCGTGAGGTCCTGAATGCGATTATTTACCGGAGTAATTTCGAACATGGTCTGATTGCTTTTATTGAGCTGTTCAACATGCGGTGATACGAGCGGGGTTGCACCCAATCCAccgtct                                                                                                                                          <  1:408446‑M2/143‑7 (MQ=255)                  gAACGTCGGAGCGTTCCGTGAGGTCCTGAATGCGATTATTTACCGGATTAATTTCAAACATGGTCTGATTTCTTTTATTGAGCTAGTCAAAATGCGGTGATAAGAGCGGGATTGTACCCACTCCACGCTCTTTTTTATAgcga                                                                                                                              >  1:182083/1‑143 (MQ=255)                          gAGCGTTCCGTGAGGTCCTGAATGCGATTATTTACCGGATTAATTTCAAACATGGTCTGATTTCTTTTATTGAGCTAGTCAAAATGCGGTGATAAGAGCGGGATTGTACCCAATCCACGCTCTTTTTTATAGAGAAGATGACg                                                                                                                      >  2:555049/1‑143 (MQ=255)                             cGTTCCGTGAGGTCCTGAATGCGATTATTTACCGGATTAATTTCAAACATGGTCTGATTTCTTTTATTGAGCTAGTCAAAATGCGGTGATAAGAGCGGGATTGTACCCAATCCACGCTCTTTTTTATAGAGAAGATGACGCTa                                                                                                                   <  2:134685/143‑1 (MQ=255)                               ttCCGTGAGGTCCTGAATGCGATTATTTACCGGATTAATTTCAAACATGGTCTGATTTCTTTTATTGAGCTAGTCAAAATGCGGTGATAAGAGCGGGATTGTACCCAATCCACGCTCTTTTTTATAGAGAAGATGACGCTaaa                                                                                                                 >  2:747971/1‑143 (MQ=255)                                  cGTGAGGTCCTGAATGCGATTATTTACCGGATTAATTTCAAACATGGTCTGATTTCTTTTATTGTGCTAGTCAAAATGCGGTGATAAGAGCGGGATTGTACCCAATCCACGCTCTTTTTTATAGAGAAGATGACGCTAAATTg                                                                                                              <  2:758802/143‑1 (MQ=255)                                      aGGTCCTGAATGCGATTATTTACCTGATTAATTTCAAACATGGTCTGCTTTCTTTTATTGCGCTAGTCAAAATGCGGTGATAAGAGCGGGATTGTACCCAATCCACGCTCTTTTTTATAGAGAAGATGACGCTAAATTGGCCa                                                                                                          <  2:508225/143‑1 (MQ=255)                                           cTGAATGCGATTATTTACCGGATTAATTTCAAACATGGTCTGATTTCTTTTATTGAGCTAGTCAAACTGCGGTGATAAGAGCGGGATTGTACCCAATCCACGCTCTTTTTTATAGAGAAGATGACGCTAAATTGGCCAGatat                                                                                                     >  1:521492/1‑143 (MQ=255)                                            tGAATGCGATTATCTGCCGATTTAATTTCAAGCATGGTCTGATTTCTTTTATTGAGCTAGTCAAAATGCGGTGATAAGAGCGGGATTGTACCCAATCCACGCTCTTTTTTATAGAGAAGATGACGCTAAATTGGCCAGATAtt                                                                                                    <  2:862724/143‑1 (MQ=255)                                              aaTGCGATTATTTACCGGATTAATTTCAGACGTGGTCTGATTTATTTTATTGAGCTAGTCAGCATGCGGTGATAAGAGCGGGATTGTACCCAATCCACGCTCTGTTTTATAGAGAAGTTGAGGCTAAGTTGGCCAggcagggt                                                                                                  >  1:527013/1‑136 (MQ=255)                                               aTGCGATTATTTACCGGATTAATTTCAAACATGGTCTGATTTCTTTTATTGAGCTAGTCAAAATGCGGTGATAAGAGCGGGATTGTACCCAATCCACGCTCTTTTTTATAGAGAAGATGACGCTAAATTGGCCAGATATTGTc                                                                                                 <  2:897853/143‑1 (MQ=255)                                                   gATTATTTACCGGATTAATTTCAAACATGGTCTGATTTCTTTTATTGAGCTAGTCAAAATGCGGTGATAAGAGCGGGATTGTACCCAATCCACGCTCTTTTTTATAGAGAAGATGACGCTAAATTGGCCAGATATTGTCgatg                                                                                             >  2:655326/1‑143 (MQ=255)                                                      tattTACCGGATTAATTTCAAACATGGTCTGATTTCTTTTATTGAGCTAGTCAAAATGCGGTGATAAGAGCGGGATTGTACCCAATCCACGCTCTTTTTTATAGAGAAGATGACGCTAAATTGGCCAGATATTGTCGATGATa                                                                                          <  2:741247/143‑1 (MQ=255)                                                             cGGATTAATTTCAAACATGGTCTGATTTCTTTTCTTGAGCTAGTCAAAAGGCGGTGATAAGAGCGGGATTGTACCCAATCCACGCTCTTTTTTATAGAGAAGATGACGGTAAATTGGCCAGATATTGTCGAAGGTAATTTgta                                                                                   >  2:315717/1‑141 (MQ=255)                                                             cGGATTAATTTCAAACATGGTCTGATTTCTTTTATTGAGCTAGTCAAAATGCGGTGATAAGAGCGGGATTGTACCCAATCCACGCTCTTTTTTATAGAGAAGATGACGCTAAATTGGCCAGATATTGTCGATGATAATTTGCa                                                                                   <  1:555049/143‑1 (MQ=255)                                                                aTTAATTTCAAACATGGTCTGATTTCTTTTATTGAGCTAGTCAAAATGCGGTGATAAGAGCGGGATTGTACCCAATCCACGCTCTTTTTTATAGAGAAGATGACGCTAAATTGGCCAGATATTGTCGATGCTAATTTGCAgcc                                                                                >  2:100157/1‑141 (MQ=255)                                                                aTTAATTTCAAACATGGTCTGATTTCTTTTATTGAGCTAGTCAAAATGCGGTGATAAGAGCGGGATTGTACCCAATCCACGCTCTTTTTTATAGAGAAGATGACGCTAAATTGGCCAGATATTGTCGATGATACTTTGCAGGc                                                                                >  2:139372/1‑143 (MQ=255)                                                                aTTAATTTCAAACATGGTCTGATTTCTTTTATTGAGCTAGTCAAAATGCGGTGATAAGAGCGGGATTGTACCCAATCCACGCTCTTTTTTATAGAGAAGATGACGCCAAATTGGCCAGATATTGTCGATGATAATTTGCAGGc                                                                                >  2:838090/1‑143 (MQ=255)                                                                 ttAATTTCAAACATGGTCTGATTTCTTTTATTGAGCTAGTCAAAATGCGGTGATAAGAGCGGGATTGTACCCAATCCACGCTCTTTTTTATAGAGAAGATGACGCTAAATTGGCCAGATATTGTCGATGATAATTTGCAGGCt                                                                               >  1:756165/1‑143 (MQ=255)                                                                    aTTTCACACATGTCCTGATTTCTTTTATTGAGCTAGTCAAAATGCGGTGATAAAATCTTTACTGTATCCAAGCCACGCTCTTTTTTATAGAGAAGATGACGCTAAATTGGCCAGATATTGTCGATGATAATTTGCAGGCTGCg                                                                            <  2:918332/143‑1 (MQ=255)                                                                    aTTTCAAACATGGTCTGATTTCTTTTATTGAGCTAGTCAAAATGCGGTGATAAGAGCGGGATTGTACCCAATCCACGCTCTTTTTTATAGAGAAGATGACGCTAAATTGGCCAGATATTGTCGATGATAATTTGCAGGCTGCg                                                                            <  1:115210/143‑1 (MQ=255)                                                                    aTTTCAAACAGGGGCTGAGTTCTTTTATTGAGCTAGTCAAAATGCGGTGATAAGAGCGGGATTGTACCCAATCCACGTTCTTTTTTATAGAGAAGATGACGCTAAATTGGCCAGATATTGTCGATGATAATTTGCAGGCTGCg                                                                            <  1:735795/143‑1 (MQ=255)                                                                      ttCAAACATGGTCTGATTTCTTTTATTGAGCTAGTCAAAATGCGGTGATAAGAGCGGGATTGTACCCAATCCACGCTCTTTTTTATAGAGAAGATGACGCTAAATTGGCCAGATATTGTCGATGATAATTTGCAGGCTGCGGt                                                                          >  1:659556/1‑143 (MQ=255)                                                                         aaaCATGGTCTGATTTCTTTTATTGGGCTAGTCAAAATGCGGTGATAAGAGCGGGATTGTACCCAATCCACGCTCTTTTTTATAGAGAAGATGACGCTAAATTGGCCAGATATTGTCGATGATAATTTGCAGGCTGCGGTTGc                                                                       <  2:899522/143‑1 (MQ=255)                                                                         aaaCATGGTCTGATTTCTTTTATTGAGCTAGTCAAAATGCGGTGATAAGAGCGGGATTGTACCCAATCCAcgctcttatcaccgcattttgactagctcaataaaagaaatcagaccatgttt                                                                                           >  2:753625‑M2/1‑70 (MQ=255)                                                                         aaaCATGGTCTGATTTCTTTTATTGAGCTAGTCAAAATGCGGTGATAAGAGCGGGATTGTACCCAATCCAcgctcttatcaccgcattttgactagctcaataaaagaaatcagaccatgttt                                                                                           <  1:753625‑M2/123‑54 (MQ=255)                                                                           acgtGGTCTGGTTTCTTTTATTGAGCTAGTCAAAATGCGGTGATAAGAGCGGGATTGTACCCAATCCACGCTCTTTTTTATAGAGAAGATGACGCTAAATTGGCCAGATATTGTCGATGATAATTTGCAGGCTGCGGTTGCcg                                                                     <  2:791409/140‑1 (MQ=255)                                                                                 tCTGATTTCTTTTATTGAGCTAGTCAAAATGCGGTGATAAGAGCGGGATTGTACCCAATCCACGCTCTTTTTTATAGAGAAGATGACGCTAAATTGGCCAGATATTGTCGATGATAATTTGCAGGCTGCGGTTGCCGCGacac                                                               >  2:276618/1‑143 (MQ=255)                                                                                  cTGATTTCTTTTATTGAGCTAGTCAAAATGCGGTGATAAGAGCGGGATTGTACCCAATCCACGCTCTTTTTTATAGAGAAGATGACGCTAAATTGGCCAGATATTGTCGATGCTAATTTGCAGGCTGCGGTCGCCGCGAAACt                                                              >  2:11249/1‑143 (MQ=255)                                                                                   tGATTTCTTTTATTGAGCTAGTCAAAATGCGGTGATAAGAGCGGGATTGTACCCAATCCACGCTCTTTTTTATAGAGAAGATGACGCTAAATTGGCCAGATATTGTCGATGATAATTTGCAGGCTGCGGTTGCCGCGAAACTc                                                             >  1:452550/1‑143 (MQ=255)                                                                                      tttCTTTTATTGAGCTAGTCAAAATGCGGTGATAAGAGCGGGATTGTACCCAATCCACGCTCTTTTTTATAGAGAAGATGACGCTAAATTGGCCAGATATTGTCGATGATAATTTGCAGGCTGCGGTTGCCGCGAAACTCGtt                                                          <  1:33442/143‑1 (MQ=255)                                                                                          ttttATTGAGCTAGTCAAAATGCGGTGATAAGAGCGGGATTGTACCCAATCCACGCTCTTTTTTATAGAGAAGATGACGCTAAATTGGCCAGATATTGTCGATGATAATTTGCAGGCTGCGGTTGCCGCGAAACTCGTTGata                                                      >  2:128085/1‑143 (MQ=255)                                                                                            gtATTGTGCTAGTCAAAATGCGGTGCTAAGAGCGGGATTGTACCCAATCCACGCTCTTTTTTATAGAGAAGATGACGCTAAATTGGCCAGATATTGTCGATGATAATTTGCAGGCTGCGGTTGCCGCGAAACTCGTTGATATc                                                    <  1:669514/142‑1 (MQ=255)                                                                                              aTTGGGCTAGTCAACGTGCGGTGATGCGGGCGGGTTTGTACCCAATCCACGCTCTTTTTTATAGAGAAGATGACGCTAAATTGGCCAGATATTGTCGATGATAATTTGCAGGCTGCGGTTGCCGCGAAACTTGTTGATATCGa                                                  <  2:386089/143‑1 (MQ=255)                                                                                                tGAGCTAGTCAAAATGCGGTGATAAGAGCGGGATTGTACCCAATCCACGCTCTTTTTTATAGAGAAGATGACGCTAAATTGGCCAGATATTGTCGATGATAATTTGCAGGCTGCGGTTGCCGCGAAACTCGTTGATATCGAGc                                                <  2:346914/143‑1 (MQ=255)                                                                                                    cTAGTCAAAATGCGGTGATAAGAGCGGGATTGTACCCAATCCACGCTCTTTTTTATAGAGAAGATGACGATAAATTGGCCAGATATTGTCGATGATAATTTGCAGGCTGCGGTTGCCGCGAAACTCGTTGAAATCGAGCTtat                                            >  2:184327/1‑143 (MQ=255)                                                                                                       gTCAAAATGCGGTGATAAGAGCGGGATTGTACCCAATCCAcgctcttatcaccgcattttgactagctcaataaaagaaatcagaccatgtttgaaattaatccggtaaataatcgcattcaggacctcacggaacgctccga                                         <  1:93693‑M2/143‑104 (MQ=255)                                                                                                       gTCAAAATGCGGTGATAAGAGCGGGATTGTACCCAATCCACGCTCTTTTTTATAGAGAAGATGACGCTAAATTGGCCAGATATTGTCGATGATAATTTGCAGGCTGTGGTTGCCGCGAAACTCGTTGATATCGAGCTTATAAg                                         >  2:621541/1‑143 (MQ=255)                                                                                                          aaaaTGCGGTGATAAGAGCGGGATTGTACCCAATCCACGCTCTTTTTTATAGAGAAGATGACGCTAAATTGGCCAGATATTGTCGATGATAATTTGCAGGCTGCGGTTGCCGCGAAACTCGTTGATATCGAGCTTATAAGCCa                                      >  1:833016/1‑143 (MQ=255)                                                                                                            caggCGGTGATAAGAGCGAGATTGTGCCCAAGCCACGCTCTTTTTTATAGGGAAGATGACGCTAAATTGGCCAGGTATGGTCAATGATAATTTGCAGGCTGCGGTTGCCGCGAAACTCGTTGATATCGAGCTTATAAGCCAGt                                    <  2:871632/140‑1 (MQ=255)                                                                                                               gCGGTGATAAGAGCGGGATTGTACCCAATCCACTCTCTTTTTTATAGAGAAGATGACGCTAAATTGGCCAGAGATTGTCGATGATAATTTGCAGGCTGCGGTTGCCGCGAAACTCGTTGATATCGAGCTTATAAGCCAGTTGc                                 <  2:182083/143‑1 (MQ=255)                                                                                                                    gATAAGAGCGGGATTGTACCCAATCCAcgctcttatcaccgcattttgactagctcaataaaagaaatcagaccatgtttgaaattaatccggtaaataatcgcattcaggccctcacggaacgctccgacgcgcttaggggg                            <  2:14192‑M2/143‑117 (MQ=255)                                                                                                                      tAAGAGCGGGATTGTACCCAATCCACGCTCTTTTTTATAGGGAAGATGACGCTAAATTGGCCAGATATTGTCGATGCTAATTTGCAGCCTGCGGTTGCCGCGAAACTCGTTGATATCGAGCTTATAAGCCAGTTGCACTTcgc                          <  2:442215/143‑1 (MQ=255)                                                                                                                      tAAGAGCGGGATTGTACCCAATCCACGCTCTTTTTTATAGAGAAGATGACGCTAAATTGGCCAGATATTGTCGATGATAATTTGCAGGCTGCGGTTGCCGCGAAACTCGTTGATATCGAGCTTATAAGCCAGTTGCACTTcgc                          <  2:452550/143‑1 (MQ=255)                                                                                                                         gagCGGGCTTGTACCCAATCCAcgctcttatcaccgcattttgactagctcaataaaagaaatcagaccatgtttgaaattaatccggtaaataatcgccctccggccctcacggcacgctccgccgtccttcgtgggtatct                       <  1:36546‑M2/143‑122 (MQ=255)                                                                                                                          agCGGGATTGTACCCAATCCACGCTCTTTTTTTTTTTTTATTTGACGCTAAATTGGCCAGATATTGTCGATGATAATTTGCAGGCTGCGGTTGCCGCGTAACTCGTTGATATCGGGCTTATCAGCCCGTTCCACTTCGCGCAc                      >  2:630276/1‑143 (MQ=255)                                                                                                                          agCGGGATTGTACCCAATCCACGCTCTTTTTTATAGAGAAGATGACGCTAAATTGGCCAGATATTGTCGATGATAATTTGCAGGCTGCGGTTGCCGCGAAACTCGTTGATATCGAGCTTATAAGCCAGTGGCACTTCGCGCAc                      >  1:616572/1‑143 (MQ=255)                                                                                                                                    tccccACTCCACGCTCTTTTTTATAGTGAAGATGACGCTAAATTGGCCAGATATTGTCGATGATAATTTGCAGGCTGCGGTTGCCGCGAAACTCGTTGATATCGAGCTTATAAGCCAGTTGCACTTCGCGCACGCCGTTATcc            <  2:379914/141‑1 (MQ=255)                                                                                                                                      cccAATCCACGCTCTTTTTTATAGAGAAGATGACGCTAAATTGGCCAGATATTGTCGATGATAATTTGCAGGCTGCGGTTGCCGCGAAACTCGTTGATATCGAGCTTATAAGCCAGTTGCACCTCGCGCCCGCCGTTCTCCgg          >  2:556231/1‑143 (MQ=255)                                                                                                                                        cAATCCACGCTCTTTTTTATAGAGAAGATGACGCTAAATTGGCCAGATATTGTCGATGATAATTTGCAGGCTGCGGTTGCCGCGAACCTCGTTGATATCGAGCTTATAAGCCAGTTGCACTTCGCGCACGCCGTTATCCGGcc        <  1:242787/143‑1 (MQ=255)                                                                                                                                          aTCCACGCTCTTTTTTATAGAGAAGATGACGCTAAATTGGCCAGATATTGTCGATGATAATTTGCAGGCTGCGGTTGCCGCGAAACTCGTTGATATCGAGCTTATAAGCCAGTTGCACTTCGCGCACGCCGGTATCCGGCCag      >  1:705287/1‑143 (MQ=255)                                                                                                                                              aCGCCCTTGTTTATAGAGAAGATGACGCTAAATTGGCCAGATATTGTCGATGATAATTTGCAGGCTGCGGTTGCCGCGAAACTCGTTGATATCGAGCTTATACGCCAGTTGCACTTCGCGCACGCCGTTATCCGGCCAGAggg  <  1:779988/143‑1 (MQ=255)                                                                                                                                              |                                                                                                                                               TCAAAGATACCCCCTAAGAACGTCGGAGCGTTCCGTGAGGTCCTGAATGCGATTATTTACCGGATTAATTTCAAACATGGTCTGATTTCTTTTATTGAGCTAGTCAAAATGCGGTGATAAGAGCGGGATTGTACCCAATCCACGCTCTTTTTTATAGAGAAGATGACGCTAAATTGGCCAGATATTGTCGATGATAATTTGCAGGCTGCGGTTGCCGCGAAACTCGTTGATATCGAGCTTATAAGCCAGTTGCACTTCGCGCACGCCGTTATCCGGCCAGAGGG  >  NC_000913/3036205‑3036488

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.