Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_000913 | 371,070 | C→G | 8.0% | A265G (GCC→GGC) | mhpB → | 3‑carboxyethylcatechol 2,3‑dioxygenase |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_000913 | 371,070 | 0 | C | G | 8.0% | 133.9 / 5.8 | 51 | A265G (GCC→GGC) | mhpB | 3‑carboxyethylcatechol 2,3‑dioxygenase |
Reads supporting (aligned to +/- strand): ref base C (20/26); new base G (2/2); total (23/28) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.92e-02 |
CGCCGCTGAGAAGTTTGTTGAGGATCAGAGAACGCTGCATCCGCTCAACCCGATTTGGGATAACCAGTTCATGACTTTGCTGGAGCAGGGACGCATACAGGAACTGGATGCCGTCAGTAACGAAGAGCTTTCCGCCATTGCCGGAAAGTCGACACATGAAATCAAAACCTGGGTCGCCGCTTTTGCCGCTATTTCTGCGTTTGGCAACTGGCGTAGCGAAGGGCGTTATTACCGCCCAATCCCGGAGTGGATTGCCGGATTTGGCTCGTTAAGCGCCAGAACA > NC_000913/370930‑371212 | cgccgcTGAGAAGTTTGTTGAGGATCAGAGAACGCTGCATCCGCTCAACCCGATTTGGGATAACCAGTTCATGACTTTGCTGGAGCAGGGACGCATACAGGAACTGGATGCCGTCAGTAACGAAGAGCTTTCCGCCATTGCCg < 1:797185/143‑1 (MQ=255) cgcTGAGGAGTTTGTTGGGGATCACAGAACGCTGCATCCGCTCAACCCGGTTTGGGATAACCAGTTCATGACTTTGCTGGAGCAGGGACGCATACAGGAACTGGATGCCGTCAGTAACGAAGAGCTTTCCGCCATTGCCGGaa < 1:725602/143‑1 (MQ=255) cgcTGAGACGGTTGTTTAGGAGCAGAGAGCGCTGCATCCGCTCGACCCGATTTGGGATAACCAGTTCATGACTGTGCTGGAGCAGGGACGCATACAGGAACTGGATGACGTCAGTAACGAAGAGCTTTCCGCCATTGCCGGaa < 2:424703/143‑1 (MQ=255) gcTGAGAAGTTTGTTGAGGATCAGAGAACGCTGCATCCGCTCAACCCGATTTGGGATAACCAGTTCATGACTTTGCTGGAGCAGGGACGCATACAGGAACTGGATGCCGTCAGTAACGAAGAGCTTTCCGCCATTGCCGGaaa < 1:597213/143‑1 (MQ=255) tGAGAAGTTTGTTGAGGATCAGAGAACGCTGCATCCGCTCAACCCGATTTGGGATAACCAGTTCATGACTTTGCTGGAGCAGGGACGCATACAGGAACTGGATGCCGTCCGTAACGAAGAGCTTTCCGGCATTGCCGGAAAGt > 1:249444/1‑143 (MQ=255) gggggaGTTTGTTGAGGATCAGAGAACGCTGCATCCGCTCAACCCGATTTGGGATAACCAGTGCATGACTTTGCTGGAGCAGGGACGCATACAGGAACTGGACGCCGTCAGTAACGAAGAGCTTTCCGGCAATGGCGGAAAgc < 2:427105/138‑2 (MQ=255) gTTTGTTGAGGATCAGAGAACGCTGCATCCGCTCAACCCGATTTGGGATAACCAGTTCATGACTTTGCTGGAGCAGGGACGCATACAGGAACTGGATGCCGTCAGTAACGAAGAGCTTTCCGCCATTGCCGGAAAGTCGacac > 1:266856/1‑143 (MQ=255) gtgttgAGGATCAGAGAACGCTGCATCCGCTCAACCCGATTTGGGATAACCAGTTCATGACTTTGCTGGAGCAGGGACGCATACAGGAACTGGATGCCGTCAGTAACGAAGAGCTTTCCGCCATTGCCGGAAAGTCGACACAt < 1:65309/142‑1 (MQ=255) gttgAGGATCAGAGAACGCTGCATCCGCTCAACCCGATTTGGGATAACCAGTTCATGACTTTGCTGGAGCAGGGACGCATACAGGAACTGGATGCCGTCAGTAACGAAGAGCTTTCCGCCATTGCCGGAAAGTCGACACATGa < 1:800334/143‑1 (MQ=255) tCAGAGAACGCTGCATCCGCTCAACCCGATTTGGGATAACCAGTTCATGACTTTGCTGGAGCAGGGACGCATACAGGAACTGGATGCCGTCAGTAACGAAGAGCTTTCCGCCATTGCCGGAAAGTCGACACATGAAATCaaaa < 1:305261/143‑1 (MQ=255) agagAACGCTGCATCCGCTCAACCCGATTTGGGATAACCAGTTCATGACTTTGCTGGAGCAGGGACGCATACAGGAACTGGATGCCGTCAGTAACGAAGAGCTTTCCGCCATTGCCGGAAAGTCGACCCATGCAATCACAAcc > 1:240550/1‑143 (MQ=255) gagaACGCTGCATCCGCTCAACCCGATTTGGGATAACCAGTTCATGACTTTGCTGGAGCAGGGACGCATACAGGAACTGGATGCCGTCAGTAACGAAGAGCTTTCCGCCATTGCCGGAAAGTCGACACATGAAATCAACAccc > 2:479764/1‑142 (MQ=255) aaCGCTGCATCCGCTCAACCCGATTTGGGATAACCAGTTCATGACTTTGCTGGAGCAGGGACGCATACAGGAACTGGATGCCGTCAGTAACGAAGAGCTTTCCGTCAGTGCGGGAAAGTCGACACATGAAATCAAAACCTggg > 1:638556/1‑143 (MQ=255) gCTGCATCCGCTCAACCCGATCGGGGATAACCAGTTCAGGACTTTGCTGGAGCAGGGACGCATACAGGAACTGGATGCCGTCAGTAACGAAGAGCTTTCCGCCATTGCCGGAAAGTCGACACATGAAATCAAAACCTGGGTcg < 2:798209/143‑1 (MQ=255) aTCCGCTCAACCCGATTTGGGATAACCAGTTCATGACTTTGCTGGAGCAGGGACGCATACAGGAACTGGATGCCGTCAGTAACGAAGAGCTTTCCGCCATTGCCGGAAAGTCGACACATGAAATCAAAACCTGGGTCGCCGCt > 1:309669/1‑143 (MQ=255) cTCAACCCGATTTGGGATAACCAGTTCATGACTTTGCTGGAGCAGGGACGCATACAGGAACTGGATGCCGTCAGTAACGAAGAGCTTTCCGCCATTGCCGGAAAGTCGACACATGAAATCAAAACCTGGGTCGCCGCTTTTGc > 1:139456/1‑143 (MQ=255) cTCAACCCGATTTGGGATAACCAGTTCATGACTTTGCTGGAGCAGGGACGCATACAGGAACTGGATGCCGTCAGTAACGAAGAGCTTTCCGCCATTGCCGGAAAGTCGACACATGAAATCAAAACCTGGGTCGCCGCTTTTGc > 1:747616/1‑143 (MQ=255) aTTTGGGATAACCAGTTCATGACTTTGCTGGAGCAGGGACGCATACAGGAACTGGATGCCGTCAGTAACGAAGAGCTTTCCGCCATTGCCGGAAAGTCGACACATGAAATCAAAACCTGGGTCGCCGCTTTTGCCGCTATTTc < 1:369970/143‑1 (MQ=255) ttGGGATAACCAGTTCATGACTTTGCTGGAGCAGGGATGCATACAGGAACTGGATGCCGTCAGTAACGAAGAGCTTTCCGCCATTGCCGGAAAGTCGACACATGAAATCAAAACCTGGGTCGCCGCTTTTGCCGCTATTTCTg < 2:240577/143‑1 (MQ=255) tAACCAGTTCATGACTTTGCTGGAGCAGGGACGCATACAGGAACTGGATGCCGTCAGTAACGAAGAGCTTTCCGCCATTGCCGGAAAGTCGACACATGAAATCAAAACCTGGGTCGCCGCTTTTGCCGCTATTTCTGCGTTTg < 1:41965/143‑1 (MQ=255) tAACCAGTTCATGACTTTGCTGGAGCAGGGACGCATACAGGAACTGGATGCCGTCAGTAACGAAGAGCTTTCCGACAATAATGGGAAGTCGACTCATGAAATCAAAACCTGGGTCGCCGCTTTTGCCGCTATTTCTGCGTTTg > 1:433672/1‑143 (MQ=255) catccAGTTCATGACTTTGCTGGAGCAGGGACGCATACAGGAACTGGATGCCGTCAGTAACGAAGAGCTTTCCGCCATTGCCGGAAAGTCGACACATGCAATCAAAACCTGGGTCGCCGCTTTTGCCGCTATTCCTGCGTTTg > 2:413891/4‑143 (MQ=255) catccAGTTCATGACTTTGCTGGAGCAGGGACGCATACAGGAACTGGATGCCGTCAGTAACGAAGAGCTTTCCGCCATTGCCGGAAAGTCGACACATGAAAGCAAAACCTGGGTCGCCGCTTTTGCCGCTATTTCTGCGTTTg > 2:413830/4‑143 (MQ=255) agccAGTTCGTGACTTTGCTGGCTCAGGGACGCATACAGGAACTGGATGCCGTCAGTAACGAAGAGCTTTCCGCCATTGCCCGAAAGTCGACACATGAAATCAAAACCTGGGTCGCCGCTTTTGCCGCTATTTCTGCGTTTgg < 2:747870/141‑1 (MQ=255) aaCCAGTTCATGACTTTGCTGGAGCAGGGACGCATACAGGAACTGGATGCCGTCAGTAACGAAGAGCTTTCCGCCATTGCCGGAAAGTCGACACATGAAATCAAAACCTGGGTCGCCGCTTTTGCCGCTATTTCTGCGTTTgg < 1:403553/143‑1 (MQ=255) ccAGTTCATGGCTGTGCTGGAGGAGGGACGCATACAGGGACTGGGTGCCGTCAGTAACGAAGAGCTTTCCGCCATTGCCGGAAAGTCGACACATGAAATCAAAACCTGGGTCGCCGCTTTTGCCGCTATTTCTGCGTTTGGCa < 2:865886/143‑1 (MQ=255) ccAGTTCATGACTTTGCTGGAGCAGGGACGCATACAGGAACTGGATGCCGTCAGTAACGAAGAGCTTTCCGCCATTGCCGGAAAGTCGACACATGAAATCAAAACCTGGGTCGCCGCTTTTGCCGCTCTTTCTGCGTTTGGCa > 2:645652/1‑143 (MQ=255) cAGTTCATGACTTTGCTGGAGCAGGGCCGCACACAGGAACTGGAGGCCGTCAGTAACGAAGAGCTTTCCGCCATTGCCGGAAAGTCGACACATGAAATCAAAACCTGGGTCGCCGCTTTTGCCGCTATTTCTGCGTTTGGCaa < 2:449409/143‑1 (MQ=255) gACTTTGCTGGAGCAGGGACGCATACAGGAACTGGATGCCGTCAGTAACGAAGAGCTTTCCGCCATTGCCGGAAAGTCGACACATGAAATCAAAACCTGCGTCGCCGCTTTTGCCGCTATTTCTGCGTTTGGCAACTGGCGTa > 2:704736/1‑143 (MQ=255) cTTTGCTGGAGCAGGGACGCATACAGGAACTGGATGCCGTCAGTAACGAAGAGCTTTCCGCCATTGCCGGAAAGTCGACACATGAAATCAAAACCTGGGTCGCCGCTTTTGCCGCTATTGCTGCGGTTGGCAACTTGCGTAGc > 1:411360/1‑143 (MQ=255) tttGCTGGAGCAGGGACGCATACAGGAACTGGATGCCGTCAGTAACGAAGAGCTTTCCGCCATTGCCGGAAAGTCGACACATGAAATCAAAACCTGGGTCGCCGCTCTTGCCGCTCTCTCTGCGTTTGGCGACTGACggcgcg > 2:525016/1‑138 (MQ=255) cgggAGCAGGGACGCATACACGGACTGTCCGCCGTCAGGAACGAAGCGCTTTCCGCCATTGCCGGAAAGTCGACACATGAAATCAAAGCCTGGGTCGCCGCTTTTGCCGCTATTTCTGCGTTTGGCAACTGGCGTAGCGAAgg < 2:149494/141‑1 (MQ=255) gCAGGGACGCATACAGGAACTGGATGCCGTCAGTAACGAAGAGCTTTCCGCCATTGCCGGAAAGTCGACACATGAAATCAAAACCTGGGTCGCCGCTTTTGCCGCTATTTCTGCGTTTGGCAACTGGCGTAGCGAAGGGCGtt < 1:356954/143‑1 (MQ=255) gCATCCACGAACTGGATGCCTTCAGTAACGCAGAGCTTTCCGCCATTGCCGGAAAGTCGACACATGAAATCAAAACCTGGGTCGCCGCTTTTGCCGCTATTTCTGCGTTTGGCAACTGGCGTAGCGAAGGGCGTTATTACCGc < 1:449482/143‑1 (MQ=255) gCATACAGGAACTGGATGCCGTCAGTAACGAAGAGCTTTCCGCCATTGCCGGAAAGTCGACACATGAAATCAAAACCTGGGTCGCCGCTTTTGCCACTATTTCTGCGTTTGGCAACTGGCGTAGCGAAGGGCGTTATTACCGc < 1:900792/143‑1 (MQ=255) tACAGGAACTGGATGCCGTCAGTAACGAAGAGCTTTCCGCCATTGCCGGAAAGGCGACACAGGAAATCAAAACCTGAGTCGCCGCGTTTGCCGCTATTCCTGCGTTTGGCAACTGGCGTAGCGAAGGGCGTGATTACCGCCCa > 2:873496/1‑143 (MQ=255) cAGGAACTGGATGCCGTCAGTAACGAAGAGCGTTCCGCCATTGCCGGATAGTCGACACATGAAATCAAGACCTGGGTCGCCGCTTTTGCCGCTATTTCTGCGTTTGGCAACTGGCGTAGCGAAGGGCGGTAATAACGcccttc < 2:129220/143‑4 (MQ=255) aGGAACTGGATGCCGTCAGTAACGAAGAGCTTTCCGGCAATGGCGGAAAgc < 2:123999/51‑2 (MQ=21) aGGAACTGGATGCCGTCAGTAACGAAGAGCTTTCCGGCAATGGCGGAAAgc > 1:123999/1‑50 (MQ=21) gAACTGGATGCCGTCAGTAACGAAGAGCTTTCCGCCATTGCCGGAAAGTCGACACATGAAATCAAAACCTGGGTCGCCGCTCATGCAGTGTTTTCGTCGTTTGGCAACTGGCGTAGCGAAGGGCGTTATTACCGCCCAATccc > 1:214052/1‑143 (MQ=255) aaCTGCATGCCGTCACTAACGAAGAGCTTTCCGCCTTTGCCGGATAGTCCACACATGAAATCTAAACCTGGGTCGCCGCTTTTGCCGCTATTTCTGCGTTTGGCAACTGGCGTAGCGAAGGGCGTTATTACCGCCCAATCCCg < 2:744262/143‑1 (MQ=255) tGCCGTCAGTAACGAAGAGGTTTCCGCCATTGCCGGAAAGTCGACACATGAAATCAAAACCTGGGTCGCCGCTTTTGCCGCTATTTCTGCGTTTGGCAACTGGCGTAGCGAAGGGCGTTATTACCGCCCAATCCCGGAGTGGa < 1:802457/143‑1 (MQ=255) gCCGTCAGTAACGAAGAGCTTTCCGCCATTGCCGGAAAGTCGACACATGAAATCAAAACCTGGGTCGCCGCTTTTGCCGCTATTTCTGCATTTGGCAACTGGCGTAGCGAAGGGCGTTATTACCGCCCAATCCCGGAGTGGAt < 1:482986/143‑1 (MQ=255) cGTCAGTAACGAAGAGCTTTCCGCCATTGCCGGAAAGTCGACACATGAAATCAAAACCTGGGTCGCCGCTTTTGCCGCTATTTCTGCGTTTGGCAACTGGCGTAGCGAAGGGCGTTATTACCGCCCAATCCCGGAGTGGATTg > 1:485145/1‑143 (MQ=255) ttaGTAACGAAGATCTTTCCGCCATTGCCGGAAAGTCGACACATGAAATCAAAACCTGGGTCGCGGCGTTTGCCGCTATTCCTGCGTTTGGCAACTGGCGTAGCGAAGGGCGTTATTACCGCCCAATCCCGGAGTGGATTGcc < 1:43277/141‑1 (MQ=255) tCAGTAACGAAGAGCTGTCCGCCATTGCCGGAAAGTCGACACATGAAATCAAAACCTGGGTCGCCGCTTTTGCCGCTATTTCTGCGTTTGGCAACTGGCGTAGCGAAGGGCGTTATTACCGCCCAATCCCGGAGTGGATTGcc < 1:479764/143‑1 (MQ=255) tAACGAAGAGCTTTCCGCCATTGCCGGAAAGTCGACACATGAAATCAAAACCTGGGTCGCCGCTTTTGCCGCTATTTCTGCGTTTGGCCACTGGCGTAGCGAAGGGCGTTATTACCGCCCAATCCCGGAGCGGAGTGACGGAt > 1:231831/1‑143 (MQ=255) cTTTCCGCCATTGCCGGAAAGTCGACACATGAAATCAAAACCTGGGTCGCCGCTTTTGCCGCTATTTCTGCGTTTGGCAACTGGCGTAGCGAAGGGCGTCATTACCGCCCAATCCCGGAGTGGATTGCCGGATTTGGCTCGtt > 1:614130/1‑143 (MQ=255) tttCCGGCAATGGCGGAAAGTCGACACATGAAATCAAAACCTGGGTTGCCGCTTTTGCCGCTAGTTCTGCGTTTGGCAACTGGCGTAGCGACGGGCGTTATTACCGCCCAATCCCGGACTCGATTACGGGCTTTGGGTCGtca > 2:5961/1‑141 (MQ=255) tttCCGCCATTGCCGGAAAGTCGACACATGAAATCAAAACCTGGGTCGCCGCTTTTGCCGCTATTTCTGCGTTTGGCAACTGGCGTAGCGAAGGGCGTTATTACCGCCCAATCCCGGAGTGGATTGCCGGATTTGGCTCGTTa > 1:219404/1‑143 (MQ=255) ccGCCATTGCCTGAAAGTCGACACATGTAATCAAAACCTGGGTCGCCGCTTTTGCCGCTATTTCTGTGTTTGGCAACTGGCGTAGCGAAGGGCGTTATTACCGCCCAATCCCGGAGTGGATTGCCGGATTTGGCTCGTTAAgc < 1:613318/143‑1 (MQ=255) ccGGAAAGTCGACACATGTAATCAAAACCTGTGTCGCCGCTTTGGCCGCTATTTCTGCGTTTGGCAACTGGCGTAGCGAAGGGCGTTATTACCGCCCAATCCCGGAGTGGATTGCCGGATTTGGCTCGTTAAGCGCCAGAACa < 1:18745/143‑1 (MQ=255) | CGCCGCTGAGAAGTTTGTTGAGGATCAGAGAACGCTGCATCCGCTCAACCCGATTTGGGATAACCAGTTCATGACTTTGCTGGAGCAGGGACGCATACAGGAACTGGATGCCGTCAGTAACGAAGAGCTTTCCGCCATTGCCGGAAAGTCGACACATGAAATCAAAACCTGGGTCGCCGCTTTTGCCGCTATTTCTGCGTTTGGCAACTGGCGTAGCGAAGGGCGTTATTACCGCCCAATCCCGGAGTGGATTGCCGGATTTGGCTCGTTAAGCGCCAGAACA > NC_000913/370930‑371212 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |