Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_000913 | 3,980,726 | G→A | 7.9% | intergenic (+30/‑161) | rffM → / → yifK | UDP‑N‑acetyl‑D‑mannosaminuronic acid transferase/putative transporter YifK |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_000913 | 3,980,726 | 0 | G | A | 7.9% | 146.3 / 3.3 | 59 | intergenic (+30/‑161) | rffM/yifK | UDP‑N‑acetyl‑D‑mannosaminuronic acid transferase/putative transporter YifK |
Reads supporting (aligned to +/- strand): ref base G (30/24); new base A (2/3); total (32/27) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 6.52e-01 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.58e-01 |
GGGCTGGAGTGGCTCTACCGCCTGCTTTCGCAGCCGAGCCGCATTAAGCGTCAGCTTCGTTTGCTGCGTTATTTACGCTGGCACTACACCGGCAACCTATGATTTTCCTCTCTTTGTAAAGCGACGGAGTGGTCACTCCGTCGCCTGTCTGCTTTTTTATTACACAAAGCATTCAAATTTTTAATGCTTTATTTG‑CCATTTCTCCTGAATTACGAAAACATTTGCAACACTCGATGTACCCATAACGATAACCGGTAACACCGGAAAGCATGCA > NC_000913/3980595‑3980868 | gggCTGGCGTGGCTCTACCGCCTGCTTTCGCAGCCGAGCCGCATTAAGCGTCAGCTTCGTTTGCTGCGTTATTTACGCTGGCACTACACCGGCAACCTATGATTTTCCTCTCTTTGTAAAGCGACGGAGTGGTCACTCCGTCg < 2:114357/143‑1 (MQ=255) gggCTGGAGTGGCTCTCCCGCCTGCTTTCGCAGCCGAGCCGCATTAAGCGTCAGCCTCGTTTGCTGCGTTATTTACGCTGGCACTACACCGGCAACCTATGATTTTCCTCTCTTTGTAAAGCGACGGAGTGACCACTCCGTCg < 1:80700/143‑1 (MQ=255) gggCTGGAGTGGCTCTACCCTCAGCTTGCCCCGCCAAGCTGCGCATAGTGTCAGCTTCGTTTGCTGCGTTATTTACGCTGGCACTACACCGGCAACCTATGATTTTCCTCTCTTTGTAAAGCGACGGAGTGACCACTCCGTCg < 1:210457/143‑1 (MQ=255) ggCTGGGGTGGCTCTTCCGCCTGCTTGCGCAGCCGAGTCGCATTAAGCGTCAGCTTCGTTTGCTGCGTTATTTACGCTGGCACTACACCGGCAACCTATGATTTTCCTCTCTTTGTAAAGCGACGGAGTGACCACTCCGTCGc < 2:229350/143‑1 (MQ=255) gcgTGGGTCTACCGCCTGCTTTCGCAGCCGAGCCGCATTAAGCGTCAGCTTCGTTTGCCGAGTTATTTACTCTGGCACTACACCGGCAACCTATGATTTTCCTCTCTTTGTAAAGCGACGGAGTGGTCACTCCGTCGCCTGTc < 2:62384/141‑1 (MQ=255) gAGTGGCTCTACCGCCTGCTTTCGCAGCCGAGCCGCATTAAGCGTCAGCTTCGTTTGCTGCGTTATTTACGCTGGCACTACACCGGCAACCTATGATTTTCCTCTCCTTGTAAAGCGACGGACAGGTCACTCCGTCGCCtctc > 2:137391/1‑143 (MQ=255) tGGCTCTACCGCCTGCTTTCGCAGCCGAGCCGCATTAAGCGTCAGCTTCGTTTGCTGCGTTATTTACGCTGGCACTACACCGGCAACCTATGATTTTCCTCTCTTTGTAAAGCGACGGAGTGGTCACTCCGTCGCCTGTCTGc > 1:293040/1‑143 (MQ=255) ctctACCGCCTGCTTTCGCAGCCGAGCCGCATTAAGCGTCAGCTTCGTTTGCTGCGTTATTTACGCTGGCACTACACCGGCAACCTATGATTTTCCTCTCTTTGTAAAGCGACGGAGTGGTCACTCCGTCGCCTGTCTGCttt > 1:408219/1‑143 (MQ=255) tACCGCCTGCTTTCGCAGCCGAGCCGCATTAAGCGTCAGCTTCGTTTGCTGCGTTATTTACGCTGGCACTACACCGGCAACCTATGATTTTCCTCTCTTTGTAAAGCGACGGAGTGGTCACTCCGTCGCCTGTCTGCtttttt > 1:609535/1‑143 (MQ=255) cGCCTGCTTTCGCAGCCGAGCCGCATTAAGCGTCAGCTTCGTTTGCTGCGTTATTTACGCTGGCACTACACCGGCAACCTATGATGTTCGTCACGTTGGAAAGCTACGGAGTGGTCACTCCGTCGCCTGTCTGCTTTTttatt > 1:35445/1‑143 (MQ=255) gccgagccgCATTAAGCGTCAGCTTCGTTTGCTGCGTTATTTACGCTGGCACTACACCGGCAACCTATGATTTTCCTCTCTTTGTAAAGCGACGGAGTGGTCACTCCGTCGCCTGTCTGCTTTTTTATTACACAAAGCATTCa > 1:631054/1‑143 (MQ=255) gccgCATTAAGCGTCAGCTTCGTTTGCTGCGTTATTTACGCTGGCACTACACCGGCAACCTATGATTTTCCACTCTTTGTAAAGCGACGGAGTGGTCACTCCGTCGCCTGTCTGCTTTTTTCGTACACAAAGCATTCCACttt > 2:740820/1‑143 (MQ=255) ccgCATTCAGCGTCAGCTTCGTTTGCTGCGTTATTTACGCTGGCACTACACCGGCAACCTATGATTTTCCTCTCTTTGTAAAGCGACGGAGTGGTCACTCCGTCGCCTGTCTGCTTTTTTATTACACAAAGCATTCAAAtttt < 2:265659/143‑1 (MQ=255) ccgCATTAAGCGTCAGCTTCGTTTGCTGCGTTATTTACGCTGGCACTACACCGGCAACCTATGATTTTCCTCTCTTTGTAAAGCGACGGAGGGGTCACTCCGTCGCCTGTCTGCTTTTTTATTACAGCAAGCGTTCAAAtgtt > 1:774625/1‑143 (MQ=255) cgCATTAAGCGTCAGCTTCGTTTGCTGCGTTATTTACGCTGGCACTACACCGGCAACCTATGATTTTCCTCTCTTTGTAAAGCGACGGAGTGGTCACTCCGTCGCCTGTCTGCTTTTTTATTACACAAAGCATTCAAAttttt < 1:662245/143‑1 (MQ=255) cATTAAGCGTCAGCTTCGTTTGCTGCGTTATTTACGCTGGCACTACACCGGCAACCTATGATTTTCCTCTCTTTGTAAAGCGACGGAGTGGTCACTCCGTCGCCTGTCTGCTTTTTTATTACACAAAGCATTCAAATTTTTaa < 1:912648/143‑1 (MQ=255) cATTAAGCGTCAGCTTCGTTTGCTGCGTTATTTACGCTGGCACTACACCGGCAACCTATGATTTTCCTCTCTTTGTAAAGCGACGGAGTGGTCACTCCGTCGCCTGTCTGCTTTTTTATTACACAAAGAATTCAAATTTTTaa > 2:543802/1‑143 (MQ=255) cATTAAGCGTCAGCTTCGTTTGCTGCGTTATTTACGCTGGCACTACACCGGCAACCTATGATTTACCTCTCTTTGTAAAGCAACGGAGTGGTCACTCCGTCGCCTGTCTGCTCTTTCATTACGGAAAGCATTCAAGTTTCTaa > 2:872312/1‑143 (MQ=255) aTTAAGCGTCAGCTTCGTTTGCTGCGTTATTTACGCTGGCACTACACCGGCAACCTATGATTTTCCTCTCTTTGTAAAGCGACGGAGTGGTCACTCCGTCGCCTGTCTGCTTTTTTATTACACAAAGCATTCAAATTTTTAAt > 1:294190/1‑143 (MQ=255) ttCGTTTGCTGCGTTATTTACGCTGGCACTACACCGGCAACCTATGATTTTCCTCTCTTTGTAAAGCGACGGAGTGGTCACTCCGTCGCCTGTCTGCTTTTTTATTACACAAAGCATTCAAATTTTTAATGCTTTATTTG‑CCa > 1:924065/1‑143 (MQ=255) tttGCTGCGTTATTTACGCTGGCACTACACCGGCAACCTATGATTTTCCTCTCTTTGTAAAGCGACGGAGTGGTCACTCCGTCGCCTGTCTGCTTTTTTATTACACAAAGCATTCAAATTTTTAATGCTTTATTTG‑cc < 2:735976/138‑1 (MQ=255) tttGCTGCGTTATTTACGCTGGCACTACACCGGCAACCTATGATTTTCCTCTCTTTGTAAAGCGACGGAGTGGTCACTCCGTCGCCTGTCTGCTTTTTTATTACACAAAGCATTCAAATTTTTAATGCTTTATTTG‑cc > 1:735976/1‑138 (MQ=255) gcgccggtATTTACGCTGGTACCACTCCGGCATCCTCTTATTTCCCTTTCTTTGTAAAGCGACGGAGTCGTCACTCCGTCGCCTGTCTGCTTTTTTATTACACATAGCATTCAAATTTTTAATGCTTTATTTG‑CCATTTCTcc < 2:848852/136‑1 (MQ=255) ctgcGTTATTTACGCTGGCACTACACCGGCAACCTATGATTTTCCTCTCTTTGTAAAGCGACGGAGTGGTCACTCCGTCGCCTGTCTGCTTTTTTATTCCACAAAGCATTCAAATTTTTAATGCTTTATTTG‑CCATTTCTCCt > 1:266641/1‑143 (MQ=255) ctgcGTTATTTACGCTGGCACTACACCGGCAACCTATGATTTTCCTCTCTTTGTAAAGCGACGGAGTGGTCACTCCGTCGCCTGTCTGCTTTTTTATTACACAAAGCATTCAAATTTTTAATGCTTTATGTG‑CCCTGTCGCCt > 1:247741/1‑143 (MQ=255) cGTTATTTACGCTGGCACTACACCGGCAACCTATGATTTTCCTCTCTTTGTAAAGCGACGGAGTGGTCACTCCGTCGCCTGTCTGCTTTTTTATTACACAAAGCATTCAAATTTTTAATGCTTTATTTG‑CCATTTCTCCTGaa > 1:626629/1‑143 (MQ=255) ttATTTACGCTGGCACTACACCGGCAACCTATGATTTTCCTCTCTTTGTAAAGCGACGGAGTGGTCACTCCGTCGCCTGTCTGCTTTTTTATTACACAAAGCATTCAAATTTTTAATGCTTTATTTG‑CCATTTCTCCTGAAtt > 1:286773/1‑143 (MQ=255) tagctACGCTCGCACTACACCGGCAACCGATGATTTTCCTCTCTTTGTAAAGCGACGGAGTGGTCACTTCGTCGCCTGTCTGCTTTTTTATTACACAAAGCATTCAAATTTTTAATGCTTTATTTG‑CCATTTCTCCTGAATTa < 1:614728/139‑1 (MQ=255) aTTGACGCTGGGAGTACACCGTAAACATATGATTTTCATCTCGTTGTAAAGCGATGGAGTGGCCACTCCGTCGCCTGTCTGCTTTTTTATTACAGAAAGCATTCAAATTTTTAATGCTTTATTTG‑CCATTGCTCCTAAATTAc < 2:606866/143‑1 (MQ=255) tGGCACTACACCGGCAACCTATGATTTTCCTCTCTTTGTAAAGCGACGGAGTGGTCACTCCGTCGCCTGTCTGCTTTTTTATTACACAAAGCATTCAAATTTTTAATGCTTTATTTG‑CCATTTCTCCTGAATTACGAAACCAt > 2:613005/1‑143 (MQ=255) gCACTACACCGGCAACCTATGATTTTCCTCTCTTTGTAAAGCGACGGAGTGGTCACTCCGTCGCCTGTCTGCTTTTTTATTACACAAAGCATTCAAATTTTTAATGCTTTATTTG‑CCATTTCTCCTGAATTACGAAAACAttt < 1:38490/143‑1 (MQ=255) cACTACACCGGCAACCTATGATTTTCCTCTCTTTGTAAAGCGACGGAGTGGTCACTCCGTCGCCTGTCTGCTTTTTTATTACACAAAGCATTCAAATTTTTAATGCTTTATTTG‑CCATTTCTCCTGAATTACGAAAACATTTg < 1:88163/143‑1 (MQ=255) cACTACACCGGCAACCTATGATTTTCCTCTCTTTGTAAAGCGACGGAGTGGTCACTCCGTCGCCTGTCTGCTTTTTTATTACACAAAGCATTCAAATTTTTAATGCTTTATTTG‑CCATTTCTCCTGAATTACGAAAACATTTg > 1:414480/1‑143 (MQ=255) cGGCAACCTATGATTTTCCTCTCTTTGTAAAGCGACGGAGTGGTCACTCCGTCGCCTGTCTGCTTTTTTATTACACAAAGCATTCAAATTTTTAATGCTTTATTTG‑CCATTTCTCCTGAATTACGAAAACATTTGCAACACTc < 2:831946/143‑1 (MQ=255) aaCCTCTGACTTTCCTCTCTTTGTAAAGCGACGGAGTGGTCACTCCGTCGCCTTTCTGCTTTTTTATTCCACAAAGCATTCAAATTTTTAATGCTTTATTTG‑CCATTTCTCCTGAATTACGAAAACATTTGCAACACTCGATg < 2:53739/143‑1 (MQ=255) tctttGATTTTCCTCTCTTTGTAAAGCGACGGAGTGGTCACTCCGTCGCCTGTCTGCTTTTTTATTACACAAAGCATTCAAATTTTTAATGCTTTATTTG‑CCATTTCTCCTGAATTACGAAAACATTTGCAACACTCGATGTa < 2:39891/139‑1 (MQ=255) cttATGTTTCTCCCCTCTTTGTCAAGCGACGGAGTGGTCACTCCGTCGCCTGTCTGCTTTTTTATTACACAAAGCATTCAAATTTTTAATGCTTTATTTG‑CCATTTCTCCTGAATTACGAAAACATTTGCAACACTCGATGTa < 2:248880/141‑1 (MQ=255) ccTATGATCTTCCTCTCTTTGTAAAGCGACGGAGTGGTCACTCCGTCGCCTGTCTGCTTTTTTATTACACAAAGCATTCAAATTTTTAATGCTTTATTTG‑CCATTTCTCCTGAATTACGAAAACATTTGCAACACTCGATGTa < 2:482099/143‑1 (MQ=255) cTATGATTTTCCTCTCTTTGTAAAGCGACGGAGTGGTCACTCCGTCGCCTGTCTGCTTTTTTATTACACAAAGCATTCAAATTTTTAATGCTTTATTTG‑CCATTTCTCCTGATTTACGAAAACCTTTGAAACACTCCATGtcc > 2:82026/1‑141 (MQ=255) cTATGATTTTCCTCTCTTTGTAAAGCGACGGAGTGGTCACTCCGTCGCCTGTCTGCTTTTTTATTACACAAAGCATTCAAATTTTTAATGCTTTATTTG‑CCATTTCTCCTGAATTACGAAAACATTTGCAACACTCGATGTAc > 1:274754/1‑143 (MQ=255) cTATGATTTTCCTCTCTTTGTAAAGCGACGGAGTGGTCACTCCGTCGCCTGTCTGCTTTTTTATTACACAAAGCATTCAAATTTTTAATGCTTTATTTG‑CCATTTCTCCTGAATTACGAAAACATTTGCAACACTCGATGTAc < 2:599969/143‑1 (MQ=255) aTTTTCCTCTCTTTGTAAAGCGACGGAGTGGTCACTCCGTCGCCTGTCTGCTTTTTTATTACACAAGGCATTCAAATTTTTAATGCTTTATTTG‑CCATTTCTCCTGAATTACGAAAACATTTGCAACACTCGATGTACCCCTa > 1:790786/1‑143 (MQ=255) aTTTTCCTCTCTTTGTAAAGCGACGGAGTGGTCACTCCGTCGCCTGTCTGCTTTTTTATTACACAAAGCATTCAAATTTTTAATGCTTTATTTG‑CCATTTCTCCTGAATTACGAAAACATTTGCAACACTCGATGTACCCATa > 1:689053/1‑143 (MQ=255) tttCCTCTCTTTGTATAGCGACGGAGTGGTCATTCCGTCGCCTGTCTGCTTTTTTATTACACAAAGCATTCAAATTTTTAATGCTTTATTTG‑CCATTTCTCCTGAATTACGAAAACATTTGCAACACTCGATGTACCCATAAc < 2:230457/143‑1 (MQ=255) tttCCTCTCTTTGTAAAGCAACGGAGTGATCACTCCGTCGCCTGTCTGCTTTTTTATTACACAAAACACAAAAATTTGCAA‑GTTTTTTTTGCCCACACCACCACAACTACAAAAACACGTGGACCACTCCATGTACCCATaaa > 2:918715/1‑142 (MQ=255) ctctctTTGTAAAGCGACGGAGTGGTCACTCCGTCGCCTGTCTGCTTTTTTATTACACAAAGCATTCAAATTTTTAGTGCTTTATTTG‑CCATTTCTCCTGAATTACGAAAACATTTGCAACACTCGATGTACCCATAACGATa > 1:708366/1‑143 (MQ=255) tctccTTGTAAAGCGACGGAGTGGTCACTCCGTCGCCTGTCTGCTTTTTTATTACACAAAGCATTCAAATTTTTAATGCTTTATTTG‑CCATTTCTCCTGAATTACGAAAACATTTGCAACACTCGATGTACCCATAACGATaa < 2:400355/143‑1 (MQ=255) ctctTTGTAAAGCGACGTAGTGGTCACTCCGTCGCCTCTCTGCTTTTTTATTACACAAAACATTCAAATTTATAACGCCAAAAATA‑CCAAATCTCCTGAATTACGAAAACATTTGCAACACTCGATGTACCCATAACGATAAc < 1:378585/143‑1 (MQ=255) ctctTTGTAAAGCGACGGAGTGGTCACTCCGTCGCCTGTCTGCTTTTTTATTACACAAAGCATTCAAATTTTTACTGCTTTATTTG‑CCATTTCTCCTGCATTACGAAAACATTTGCAACACTCGATCTACCCATAACGACAAc > 2:106271/1‑143 (MQ=255) ctTTGTAAAGCGACGGAGTGGTCACTCCGTCGCCTGTCTGCTTTTTTATTACACAAAGCATTCAAATTTTTAATGCTTTATTTG‑CCATTTCTCCTGAATTACGAACACATTTGCAACACTCGCTGTACCCATAACTATAACCg > 2:620878/1‑143 (MQ=255) ctTTGTAAAGCGACGGAGTGGTCACTCCGTCGCCTGTCTGCTTTTTTATTACACAAAGCATTCAAATTTTTAATGCTTTATTTG‑CCATTTCTCCTGAATTACGAAAACATTTGCAACACTCGCTGTACCCATAACGATAACCg > 2:265310/1‑143 (MQ=255) tttGTAAAGCGACGGAGTGGTCACTCCGTCGCCTGTCTGCTTTTTTATTACACAAAGCATTCAAATTTTTAATGCTTTATTTG‑CCATTTCTCCTGAATTACGAAAACATTTGCAACACTCGATGTACCCATAACGATAACCgg > 1:96637/1‑143 (MQ=255) ttGTAAAGCGACGGAGTGGTCACTCCGTCGCCTGTCTGCTTTTTTATTACACAAAGCATTCAAATTTTTAATGCTTTATTTG‑CCATTCCTCCTGAATTACGAAAACATTTGCAACACTCGATGTACCCATAACGATAACCGGt < 1:202447/143‑1 (MQ=255) aGCGACGGAGTGGTCACTCCGTCGCCTGTCTGCTTTTTTATTACACAAAGCATTCAAATTTTTAATGCTTTATTTG‑CCATTTCTCCTGAATTACGAAAACATTTGCAACACTCGATGTACCCATAACGATAACCGGTAACAcc < 1:712740/143‑1 (MQ=255) gCGACGGAGTGGTCACTCCCTCGCCTGTCTGCGTTTTTATGACACAAAGCATTCAAATTTTTCATGCTTTATTTG‑CCATTTCTCCTGAATTACGAAAACAGTTGCAACACTCGATGTACCCATAACGATAACCGGTAACACCg < 1:144007/143‑1 (MQ=255) gCGACGGAGTGACCACTCCGTCGCCTGTCTGCTTTTTTATTACACAAAGCATTCAAATTTTTAATGCTTTATTTG‑CCATTTCTCCTGAATTACGAAAACATTTGCAACACTCGATGTACCCATAACGATAACCGGTAACACCg > 2:348606/1‑143 (MQ=255) cGACGGAGTGGTCACTCCGTCGCCTGTCTGCTTTTTTATTACACAAAGCATTCAAATTTTTAATGCTTTATTTG‑CCATTTCTCCTGAATTACGAAGACATTTGCAACACTCGATGTACCGTTAACGTGAACCGGTAGCACCgg > 1:885277/1‑143 (MQ=255) gACGGAGTGGTCACTCCGTCGCCTGTCTGCTTTTTTATTACACAAAGCATTCAAATTTTTAATGCTTTATTTG‑CCATTTCTCCTGAATTACGAAAACATTTGCAACACTCGATGTACCCATAACGATAACCGGTAACACCGGa < 1:509663/143‑1 (MQ=255) aCGGAGTGGTCACTCCGTCGCCTGTCTGCTTTTTTATTACACAAAGCATTCAAATTTTTAATGCTTTATTTG‑CCATTTCTCCTGAATTACGAAAACATTTGCAACACTCGATGTACCCCTAACGATAACCGGTAACACCggca > 2:190894/1‑141 (MQ=255) ggattcgTCACCCCGTCGTCTGTCTTCTTTTTTATTACACAAAGCATTCAAATTTTTAATGCTTTATTTG‑CCATTTCTCCTGAATTACGAAAACATTTGCAACACTCGATGTACCCATAACGATAACCGGTAACACCGGAAAg < 2:124911/137‑1 (MQ=255) gTCACTCCGTCGCCTGTCTGCTTTTTTATTACACAAAGCATTCAAATTTTTAATGCTTTGTTTG‑CCATTTCTCCTGAATTACGAAAACATTTGCAACACTCGCTGTACCCATAACGATAACCGGTAACACCGTAAAGCATGCa > 2:636538/1‑143 (MQ=255) gTCACTCCGTCGCCTGTCTGCTTTTTTATTACACAAAGCATTCAAATTTTTAATGCTTTATTTG‑CCATTTCTCCTGAATTACGAAAACATTTGCAACACTCGATGTACCCATAACGATAACCGGTAACCCCGGAAAGCATGCa > 2:137636/1‑143 (MQ=255) | GGGCTGGAGTGGCTCTACCGCCTGCTTTCGCAGCCGAGCCGCATTAAGCGTCAGCTTCGTTTGCTGCGTTATTTACGCTGGCACTACACCGGCAACCTATGATTTTCCTCTCTTTGTAAAGCGACGGAGTGGTCACTCCGTCGCCTGTCTGCTTTTTTATTACACAAAGCATTCAAATTTTTAATGCTTTATTTG‑CCATTTCTCCTGAATTACGAAAACATTTGCAACACTCGATGTACCCATAACGATAACCGGTAACACCGGAAAGCATGCA > NC_000913/3980595‑3980868 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |