Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_000913 | 4,125,097 | C→T | 100% | E572K (GAG→AAG) | priA ← | primosome factor N' |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_000913 | 4,125,097 | 0 | C | T | 100.0% | 106.6 / ‑6.7 | 41 | E572K (GAG→AAG) | priA | primosome factor N' |
Reads supporting (aligned to +/- strand): ref base C (0/0); major base T (22/16); minor base G (1/2); total (23/18) | |||||||||||
Rejected as polymorphism: E-value score below prediction cutoff. | |||||||||||
Rejected as polymorphism: Frequency below/above cutoff threshold. | |||||||||||
Rejected as polymorphism: Variant not supported by required number of reads on each strand. |
GCAAAGGCGTCGTAGCCTTTATAGAGCAACGTTTGCAACAGAGGATGTTCCGGATGGTGCGTTTGCAGCACCACTTCGCCCTGTTTACCCGCACGCCCGGCACGACCGGCGACCTGGGTGTAAAGCTGAGCGAAACGCTCTGCCGAGCGAAAATCGGCAGAAAACAGCGCGCCGTCCACGTCCAGTAATGCAACCAGCGTCACATCCGGGAAATGGTGACCTTTCGCCAGCATTTGTGTACCAATCAAAATCCGCGCGCCGCCGCGATGTACTTCTG > NC_000913/4124958‑4125234 | gCAAAGGCGTCGTAGCCTTTATAGAGCAACGTTTGCAACAGAGGATGTTCCGGATGGTGCGTTTGCAGCACCACTTCGCCCTGTTTACCCGCACGCCCGGCACGACCGGCGACCTGGGTGTAAAGCTGAGCGAAACGCTTTGc < 2:739372/143‑1 (MQ=255) gCAAAGGCGTCGTAGCCTTTATAGAGCAACGTTTGCAACAGAGGATGTTCCGGATGGTGCGTTTGCAGCACCACTTCGCCCTGTTTACCCGCACGCCCGGCACGACCGGCGACCTGGGTGTAAAGCTGAGCGAAACGCTTTGc > 2:311859/1‑143 (MQ=255) ggCGTCGTAGCCTTTATAGAGCAACGTATGCAACAGAGGATGTTCCGGCTGGTGCGTTTGCAGCGCCACTTCGCCCTGTTTACCCGCACGCCCGGCACGACCGGCGACCTGGGTGTAAAGCTGAGCGAAACGCTTTGCCGAGc < 2:435738/143‑1 (MQ=255) tAGCCGTTATAGAGAAACGGTTTCAACAGAAGATGTTCCGGATGGTGCGTTTGCAGCACCACTTCGCCCAGTGTACCCGCACGCCCGGCACGACCGGCGACCTGGGTGCAAAGCTGAGCGAAACGCCTTGCCGGGCGAACATc > 2:623724/1‑143 (MQ=255) gCCTTTATAGAGCAACGTTTGCAACAGAGGATGTTCCGGATGGTGCGTTTGCAGCACCACTTCGCCCTGTTTACCCGCACGCCCGGCACGACCGGCGACCTGGGTGTAAAGCTGAGCGAAACGCTTTGCCGAGCGAAAATCgg < 2:756245/143‑1 (MQ=255) gagagCAACGTTGGCAACAGAGGATGTTCCGGATGGTGCGTTTGCCGCACCACTTCGCCCTGTTTACCCGCACGCCCGGCACGACCGGCGACCTGGGTGTAGAGCTGAGCGAAACGCTTTGCCGAGCGAAAATCGGCAGaaaa < 2:66168/142‑1 (MQ=255) gagCAACGTTTGCAACAGAGGATGTTCCGGATGGTGCGTTTGCAGCACCACTTCGCCCTGTTTACCCGCACGCCCGGCACGACCGGCGACCTGGGTGTAAAGCTGAGCGAAACGCTTTGCCGAGCGAAAATCGGCAGAAAACa > 2:321308/1‑143 (MQ=255) gagCAACGTTTGCAACAGAGGATGTTCCGGATGGTGCGTTTGCAGCACCACTTCGCCCTGTTTACCCGCACGCCCGGCACGACCGGCGACCTGGGTGTAAAGCTGAGCGAAACGCTTTGCCGAGCGAAAAGAGGCGGaaacta > 2:807259/1‑140 (MQ=255) agCAACGTTTGCAACAGAGGATGTTCCGGATGGTGCGTTTGCAGCACCACTTCGCCCTGTTTACCCGCACGCCCGGCACGACCGGCGACCTGGGTGTAAAGCTGAGCGAAACGCTTTGCCGAGCGAAAATCGGCAGAAAACAg > 1:92386/1‑143 (MQ=255) aaCAGAGGATGTTCCGGATGGTGCGTTTGCAGCACCACTTCGCCCTGTTTACCCGCACGCCCGGCACGACCGGCGCCCTGGGTGTACAGCTGTGCGAAACGCTTTGGCGAGCGGCAATCGGCAGAAAACAGCGCGCcggccac > 2:700773/1‑143 (MQ=255) cAGAGGATGTTCCGGATGGTGCGTTTGCAGCACCACTTCGCCCTGTTTACCCGGACGCCCGGGACGACCGGCGACCCGGGTGTAAGGCTGAGCGAAACGCTGTGGCGAGGGAAAGACGGCAGAGAACAGGGCGCcgtgagcga > 2:545030/1‑137 (MQ=255) tCCGGATGGTGCGTTTGCAGCACCACTTCGCCCTGTTTACCCGCACGCCCGGCACGACCGGCGACCTGGGTGTAAAGCTGAGCGAAACGCTTTGCCGAGCGAAAATCGGCAGACAACAGCGCGCCGTCCACGTCCAGTAATGc > 1:729941/1‑143 (MQ=255) tttGCAGCACCACTTCGCCCTGTTTACCCGCACGCCCGGCACGACCGGCGACCTGGGTGTAAAGCTGAGCGAAACGCTTTGCCGAGCGAAAATCGGCAGAAAACAGCGCGCCGTCCACGTCCAGTAATGCAACCAGCGTcaca < 1:527938/143‑1 (MQ=255) gcagcaCCACTTCGCCCTGTTTACCCGCACGCCCGGCACGACCGGCGACCTGGGTGTAAAGCTGAGCGAAACGCTTTGCCGAGCGAAAATCGGCAGAAAACAGCGCGCCGTCCCCGTCCAGTCACGCAACCAGCGTCACATcc > 1:807876/1‑143 (MQ=255) cagcaCCACTTCGCCCTGTTTACCCGCACGCCCGGCACGACCGGCGACCTGGGTGTAAAGCTGAGCGAAACGCTTTGCCGAGCGAAAATCGGCCGAAAACAGCGCGCCGTCCACGTCCAGTAACGCTACCAGCGGCACATGCg > 2:486731/1‑143 (MQ=255) cagcaCCACTTCGCCCTGTTTACCCGCACGCCCGGCACGACCGGCGACCTGGGTGTAAAGCTGAGCGAAACGCTTTGCCGAGCGAAAATCGGCAGAAAACAGCGCGCCGTCCACGTCCAGTAATGCAACCAGCGTCACATCCg < 1:614208/143‑1 (MQ=255) gcaCCACTTCGCCCTGTTTACCCGCACGCCCGGCACGACCGGCGACCTGGGTGTAAAGCTGAGCGAAACGCTTTGCCGAGCGAAAATCGGCAGAAAACAGCGCGCCGTCCACGTCCAGTAATGCAACCCGCGTCACATCCggg > 1:22312/1‑143 (MQ=255) caccacTTCGCCCTGTTTACCCGCACGCCCGGCACGACCGGCGACCTGGGTGTAAAGCCGAGCGAAACCCCTTGCCGAGCGAAAATCGGCAGAAAACAGCGCGCCGTCCACGTCCAGTAAGGCAACCAGCGTCCCATCCGGGa > 2:111391/1‑143 (MQ=255) cacTTCGCCCTGTTTACCCGCACGCCCGGCACGACCGGCGACCTGGGTGTAAAGCTGAGCGAAACGCTTTGCCGAGCGAAAATCGGCAGAAAACAGCGCGCCGTCCAGGTCGCGTCATGCAACCTGCGTCACGTCgggggtat > 1:250676/1‑139 (MQ=255) cacTTCGCCCTGTTTACCCGCACGCCCGGCACGACCGGCGACCTGGGTGTAAAGCTGAGCGAAACGCTTTGCCGAGCGAAAATCGGCAGAAAACAGCGCGCCGTCCACGTCCAGTAATGCAACCAGCGTCACATCCGGGaaac > 1:779547/1‑142 (MQ=255) ccTGTTTACCCGCACGCCCGGCACGACCGGCGACCTGGGTGTAAAGCTGAGCGAAACGCTTTGCCGAGCGAAAATCGGCAGAAAACAGCGCGCCGTCCACGTCCAGTAATGCAACCAGCGTCACATCCGGGCAATGGCGACCt > 2:91138/1‑143 (MQ=255) tggcgccccGCACGCCCGGCACGACCGGCGACCTGGGTGTAACGCTGCGCGAAACGCTTTGCCGAGCGAAAATCGGCAGAAAACAGCGCGCCGTCCACGTCCAGTAATGCAACCAGCTTCACATCCGGGAAATGGTGACCttt < 1:465500/137‑1 (MQ=255) ttgcccGCACGCCCGGCACGACCGGCGACCTGGGTGTAAAGCTGAGCGAAACGCTTTGCCGAGCGAAAATCGGCAGAAAACAGCGCGCCGTCCACGTCCAGTAATGCAACCAGCGTCACATCCGGGAAATGGTGACCTTTCGc < 1:15249/140‑1 (MQ=255) aCCCGCACGCCCGGCACGACCGGCGACCTGGGTGTAAAGCTGAGCGAAACGCTTTGCCGAGCGAAAATCGGCAGAAAACAGCGCGCCGTCCACGTCCAGTAATGCAACCAGCGTCACATCCGGGAAATGGTGACCTTTCGCCa < 1:621326/143‑1 (MQ=255) gCCCGGCACGACCGGCGACCTGGGTGTAAAGCTGAGCGAAACGCTTTGCCGAGCGAAAATCGGCAGAAAACAGCGCGCCGTCCACGTCCAGTAATGCAACCAGCGTCACATCCGGGAAATGGTGACCTTTCGCCAGCATTtgt < 2:79679/143‑1 (MQ=255) gCCCGGCACGACCGGCGACCTGGGTGTAAAGCTGAGCGAAACGCTTTGCCGAGCGAAAATCGGCAGAAAACAGCGCGCCGTCCACGTCCAGTAATGCAACCAGCGTCACATCCGGGAAATGGCGACCTTTCGCCAGCATAtgg > 1:912677/1‑142 (MQ=255) ggCGCGACCGGCGACCTGGGTGTAAAGCTGAGCGAAACGCTTTGCCGAGCGAAAATCGGCAGAAAACAGCGCGCCGTCCACGTCCAGTAATGCAACCAGCGTCACATCCGGGAAATGGTGACCTTTCGCCAGCATTTGTGTAc < 2:68677/143‑1 (MQ=255) ggCACGACCGGCGACCTGGGTGTAAAGCTGAGCGAAACGCTGTGCCGAGCGAAAATCGGCAGAAAACAGCGCGCCGTCCACGTCCAGTAATGCAACCAGCGTCACATCCGGGAAATGGTGACCTTTCGCCAGCATTTGTGTAc < 1:654348/143‑1 (MQ=255) gACCGGCGACCTGGGTGTAAAGCTGAGCGAAACGCTTTGCCGAGCGAAAATCGGCAGAAAACAGCGCGCCGTCCACGTCCAGTAATGCAACCAGCGTCACAGCCGGGAAATGGTGACCTGTCGCCAGCATTCGTGTCCCAATc > 1:94623/1‑143 (MQ=255) gACCTGGGTGTAAAGCTGAGCGAAACGCTTTGCCGAGCGAAAATCGGCAGAAAACAGCGCGCCGTCCACGTCCAGTAATGCAACCAGCGACACATCCGGGAAATGGTGACCTTTCGCCAGCATTTGTGTAACAATCAACATcc > 1:374829/1‑143 (MQ=255) aCCTGCGTGCAAAGGTAAGCTAAACTCTTTGCCGAGCGAAAATCGGCACAAAACAGCGCGCCGTCCACGTCTAGTAATTCAACCAGCGTCACATCCGGGAAATGGTGACCTTTCGCCAGCATTTGTGTACCAATCAAAATCcg < 2:502180/143‑1 (MQ=255) ccTGGGTGTAAAGCTGAGCGAAACGCTTTGCCGAGCGAAAATCGGCAGAAAACAGCGCGCCGTCCACGTCCAGTCATGCAACCAGCGTCACATATCGGAGATGGTGACCTTTCGCCAGCATTTGTGTGCCAATCAGAATCcgc > 1:893680/1‑143 (MQ=255) ccTGGGTGTAAAGCTGAGCGAAACGCTTTGCCGAGCGAAAATCGGCAGAAAACAGCGCGCCGTCCACGTCCAGTAATGCAACCAGCGTCACATCCGGGAAATGGTGACCTTTCGCCAGCATTTGTGTACCAATCAAAATCcgc < 2:733218/143‑1 (MQ=255) tGGGGGTAAAGCTGAGCGAAACGCTTTGCCGAGCGAAAATCGGCAGAAAACAGCGCGCCGTCCACGTCCAGTAATGCAACCAGCGTCACATCCGGGAAATGGTGACCTTTCGCCAGCATTTGTGTACCAATCAAAATCcgcgc < 2:92386/143‑1 (MQ=255) ggTGTAAAGCTGAGCGAAACGCTTTGCCGAGCGAAAATCGGCAGAAAACAGCGCGCCGTCCACGTCCAGTAATGCAACCAGCGTCACATCCGGGAAATGGTGACCTTTCGCCAGCATTTGTGTACCAATCAAAATCCgcgcgc < 1:293254/143‑1 (MQ=255) gtAAAGCTGAGCGAAACGCTTTGCCGAGCGAAAATCGGCAGAAAACAGCGCGCCGTCCACGTCCAGTAATGCAACCAGCGTCACATCCGGGAAATGGTGACCTTTCGCCAGCATTTGTGTACCAATCAAAATCCGCGcgccgc > 1:806228/1‑143 (MQ=255) tAAAGCTGAGCGAAACGATTTGCCGAGCGAAAATCGGCAGAAAACAGCGCGCCGTCCACGTCCAGTAATGCAACCAGCGTCACATCCGGGAAATGGTGACCTTTCGCCAGCATTCGTGTACCAAGCAAAATCCGCGcgccgcc > 2:337066/1‑143 (MQ=255) gCTGAGCGAAACGCTTTGCCGAGCGAAAATCGGCAGAAAACAGCGCGCCGTCCACGTCCAGTAATGCAACCAGCGTCACATCCGGGAAATGGTGACCTTTCGCCAGCATTTGTGTACCAATCAAAATCCGCGCGCCGCCGCGa < 2:612190/143‑1 (MQ=255) gCTCAGCGAAACGCTGTGCCGAGCGAAAATCGGCAGAAAACAGCGCGCCGTCCACGTCCAGTAATGCAACCAGCGTCACATCCGGGAAATGGTGACCTTTCGCCAGCATTTGTGTACCAATCAAAATCCGCGCGCCGCCGCGa < 1:621626/143‑1 (MQ=255) gAAACGCTTTGCCGAGCGAAAATCGGCAGAAAACAGCGCGCCGTCCACGTCCAGTAATGCAACCAGCGTCACGTCCGGGGAATGGTGACGTTTCGCCACCCTTTGTGTACCCGTCGCTCTCCGCGCGCCCCGGCGACGTACtt > 1:278636/1‑143 (MQ=255) aCGCTTTGCCGAGCGAAAATCGGCAGAAAACAGCGCGCCGTCCACGTCCAGTAATGCAACCAGCGTCACATCCGGGAAATTGTTACCTTTCGCCAGCGTTTGTGTGCCACTCCAAATCCGCGCGCCGCCGCGATGTACTTCTg > 1:256269/1‑143 (MQ=255) | GCAAAGGCGTCGTAGCCTTTATAGAGCAACGTTTGCAACAGAGGATGTTCCGGATGGTGCGTTTGCAGCACCACTTCGCCCTGTTTACCCGCACGCCCGGCACGACCGGCGACCTGGGTGTAAAGCTGAGCGAAACGCTCTGCCGAGCGAAAATCGGCAGAAAACAGCGCGCCGTCCACGTCCAGTAATGCAACCAGCGTCACATCCGGGAAATGGTGACCTTTCGCCAGCATTTGTGTACCAATCAAAATCCGCGCGCCGCCGCGATGTACTTCTG > NC_000913/4124958‑4125234 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |