Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_000913 | 4,159,126 | G→A | 12.5% | A213T (GCG→ACG) | oxyR → | DNA‑binding transcriptional dual regulator OxyR |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_000913 | 4,159,126 | 0 | G | A | 12.5% | 90.8 / 4.1 | 40 | A213T (GCG→ACG) | oxyR | DNA‑binding transcriptional dual regulator OxyR |
Reads supporting (aligned to +/- strand): ref base G (18/17); new base A (3/2); total (21/19) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.92e-01 |
TTGCTGGCTATCTATGAAGATCACCCGTGGGCGAACCGCGAATGCGTACCGATGGCCGATCTGGCAGGGGAAAAACTGCTGATGCTGGAAGATGGTCACTGTTTGCGCGATCAGGCAATGGGTTTCTGT‑TTTGAAGCCGGGGCGGATGAAGATACACACTTCCGCGCGACCAGCCTGGAAACTCTGCGCAACATGGTGGCGGCAGGTAGCGGGATCACTTTACTGCCAGCGCTGGCTGTGCCGCCGGAGCGCAAACGCGATGGGGTTGTTTATCTGCCGTG > NC_000913/4158985‑4159265 | ttGCTGGTTATCTATGAAGTTCACCCGTTGGGGAACCGCGAATGCGTACGGATGGCCGATCTGGCAGGGGAAAAACTGCTGATGCTGGAAGATGGTCACTGTTTGCGCGATCAGGCAATGGGTTTCTGT‑TTTGAAGCCGGGGc < 2:184373/143‑1 (MQ=255) catctatGAAGATCACCCGTGGGCGAACCGCGAATGCGTACCGATGGCCGATCTGGCAGGGGAAAAACTGCTGATGCTGGAAGATGGTCACTGTTTGCGCGATCAGGCAATGGGTTTCTGT‑TTTGAAGCCGGGGCGGATGAAg < 1:249114/142‑1 (MQ=255) atGAAGATCACCCGTGGGCGAACCGCGAATGCGTACCGATGGCCGATCTGGCAGGGGAAAAACTGCTGATGCTGGAAGATGGTCACTGTTTGCGCGATCAGGCAATGGGTTTCTGT‑TTTGAAGCCGGGGCGGATGAAGATaca > 1:891061/1‑143 (MQ=255) aaGATCACCCGTGGGCGAACCGCGAATGCGTACCGATGGCCGATCTGGCAGGGGAAAAACTGCTGATGCTGGAAGATGGTCACTGTTTGCGCGATCAGGCAATGGGTTTCTGT‑TTTGAAGCCGGTGCGGATGTAGATacacac > 1:268787/1‑143 (MQ=255) aaGATCACCCGTGGGCGAACCGCGAATGCGTACCGATGGCCGATCTGGCAGGGGAAAAACTGCTGATGCTGGAAGATGGTCACTGTTTGCGCGATCAGGCAATGGGTTTCTGT‑TTTGAAGCCGGGGCGGATGAAGATacccac > 1:329759/1‑143 (MQ=255) gggCGAACCGCGAATGCGTACCGATGGCCGATCTGGCAGGGGAAAAACTGCTGATGCTGGAAGATGGTCACTGTTTGCGCGATCAGGCAATGGGTTTCTGT‑TTTGAAGCCGGGGCGGATGAAGATACACACTTCCGCGCGAcc < 1:661344/143‑1 (MQ=255) gAACCGCGAATGCGTACCGATGGCCGATCTGGCAGGGGAAAAACTGCTGATGCTGGAAGATGGTCACTGTTTGCGCGATCAGGCAATGGGTTTCTGT‑TTTGAAGCCGGGGCGGATGAAGATACACCCTTCCGCGCGACCAGcc > 1:368851/1‑143 (MQ=255) gcgAATGCGTACCGATGGCCGATCTGGCAGGGGAAAAACTGCTGATGCTGGAAGATGGTCACTGTTTGCGCGATCAGGCAAGGGGTTTCTGT‑TTTGAAGCCGGGGCGGATGAAGATACACACTTCCGCGCGACCCGCCTGGag > 1:859496/1‑142 (MQ=255) gTACCGATGGCCGATCTGGCAGGGGAAAAACTGCTGATGCTGGAAGATGGTCACTGTTTGCGCGATCAGGCAATGGGTTTCTGT‑TTTGAAGCCGGGGCGGATGAAGATACACACTTCCGCGCGACCAGCCTGGAAACTCTgcg < 1:478670/143‑1 (MQ=255) aCCGATGGCCGATCTGGCAGGGGAAAAACTGCTGATGCTGGAAGATGGTCACTGTTTGCGCGATCAGGCAATGGGTTTCTGT‑TTTGAAGCCGGGGCGGATGAAGATACACACTTCCGCGCGACCAGCCTGGAAACTCTGCGCa > 2:265584/1‑143 (MQ=255) cggtGGCCGCTCTTGCAGGGGAAAATCTGCTGATGCTGGAAGATGGTCACTGTTTGCGCGATCAGTCAATTGGTTTCTGT‑TTTGAAGCCGGGGCGGATGAAGATACACACTTCCGCGCGACCAGCCTGGAAACTCTGCGCAAc < 2:899292/140‑1 (MQ=255) ggCCGATCTGTCAGGGGAAAAACTGCTGATGCTGGAAGATGGTCACTGTTTGCGCGATCAGGCAATGGGTTTCTGT‑TTTGAAGCCGGGGCGGATGAAGATACACACTTCCGCGCGACCAGCCTGGAAACTCTGCGCAACAtgg < 2:724185/143‑1 (MQ=255) cGATCTGGGAGGGGAAAATCTGCTGATGCTGGAAGATGGTCACTGTTTGCGCGATCAGGCAATGGGTTTCTGT‑TTTGAAGCCGGGGCGGATGAAGATACACACTTCCGCGCGACCAGCCTGGAAACTCTGCGCAACAtggtgg < 2:180417/143‑1 (MQ=255) ggCAGGGGAAAAACTGCTGATGCTGGAAGATGGTCACTGTTTGCGCGATCAGGCAATGGGTTTCTGT‑TTTGAAGCCGGGGCGGATGAAGATACACACTTCCGCGCGACCAGCCTGGAAACTCTGCGCAACATGGTGGCGGCAg < 1:585384/143‑1 (MQ=255) aGGGGAAAAACTGCTGATGCTGGAAGATGGTCACTGTTTGCGCGATCAGGCAATGGGTTTCTGT‑TTTGAAGCCGGGGCGGATGAAGCTACACACTTCCGCGCGACCAGCCTGGAAACTCTGCGCACCATGGTGGCGGCAGGTa > 1:822885/1‑143 (MQ=255) tggctgAGGCTGGGAGATGGTCAGTGGTTGCGCGATCGTGCAATGGGGTTCTGT‑TTGGAAGCCGGCGCGGATGAATATACACACTTCCGCGCGACCAGCCTGGAAACTCTGCGCAACATGGTGGCGGCAGGTAGCGGGATCAc < 2:470398/141‑1 (MQ=255) ctgctgATGCTGGAAGATGGTCACTGTGTGCGCGATCAGGCAATGGGTCTCCGTCATAGTAG‑CGGTGCGGATGAAGATACACACTTCCGCGCGACCAGCCTGGAAACTCTGCGCAACATGGTGGCGGCAGGTAGCGGGATCAc < 1:937429/143‑1 (MQ=255) ctgccgAGGCTGGCAGATGGTCACTGTTGGCGCGATCAGGCAATGGGTTTCTGT‑TGTGAAGCCGGGGCGGATGAAGATACACACTTCCGCGCGACCAGCCTGGAAACTCTGCGCAACATGGTGGCGGCAGGTAGCGGGATCAc < 2:476524/143‑1 (MQ=255) gcggATGCTGGAGGATGGTCGCGGTTTGGGCGATCAGGCAATGGGTTTCTGG‑TTGGAAGCCGGGGCGGATGAAGACACACACTTCCGCGCGACCAGCCTGGAAACTCTGCGCAACATGGTGGCGGCAGGTAGCGGGATCACtt < 2:675665/140‑1 (MQ=255) aTGCTGGAAGATGGTCACTGTTTGCGCGATCAGGGGATGGGTGGCGGT‑TTTGAAGCCGGGGCGGATGAAGATACACACTTCCGCCCGACCAGCCTGGGACCTCTGCGCCACATGGTGGCGGCAGGTAGCGGGATCACTTTACt > 2:622845/1‑143 (MQ=255) aTGCTCGAAGATGGTCACTGTTTGCGCGATCAGGCAATGGGTTTCTGT‑TTTGAAGCCGGGACGGATGAAGATACACACTTCCGCGCGACCAGCCTGGAAACTCTGCGCAACATGGTGGCGGCAGGTAGCGGGATCACTTTACt < 1:847175/143‑1 (MQ=255) gCTGGAAGATGGTCACTGTTTGCGCGATCAGGCAATGGGTTTCTGT‑TTTGAAGCCGGGGCGGATGAAGATACACACTTCCGCGCGACCAGCCTGGAAACTCTGCGCAACATGGTGGCGGCAGGTAGCGGGAGCACCTTACTGc > 1:322449/1‑143 (MQ=255) tGGAAGATGGTCACTGTTTGCGCGATCAGGCAATGGGTTTCTGT‑TTTGAAGCCGGGGCGGATGAAGATACACACTTCCGCGCGACCAGCCTGGAAACTCTGCGCAACATGGTGGCGGCAGGTAGCGGGGTCACTTTACTGccc > 2:213712/1‑142 (MQ=255) tGGAAGATGGTCACTGTTTGCGCGATCAGGCAATGGGTTTCTGT‑TTTGAAGCCGGGGCGGATGAAGATACACACTTCCGCGCGACCAGCCTGGAAACTCTGCGCAACATGGTGGCGGCAGGTAGCGGGATCACTTTACTGCCa > 1:538311/1‑143 (MQ=255) gAAGATGGTCACTGTCTGCGCGATCAGGCAATGGGTTTCTGT‑TTTGAAGCCGGGACGGATGAAGATACACACTTCCGCGCGACCAGCCTGGAAACTCTGCGCAACATGGTGGCGGCAGGTAGCGGGATCACTTTACTGCCAgc > 2:793582/1‑143 (MQ=255) tgATGGTTTCTGTGTGCGCGATCAGGCAATGGGTTTCTGT‑TTTGAAGCGGGGGCGGATGAAGATACACACTGCCGCGCGACCAGCCTGGAAACTCTGCGCAACATGGTGGCGGCAGGTAGCGGGATCACTTTACTGCCAgcgc < 2:319245/142‑1 (MQ=255) tGGTCACTGTTTGCGCGATCAGGCAATGGGGTTCGGT‑TTTGAAGCCGGGGCGGATGAAGATACACACTGCCGCGCGACCAGCCTGGAAACTCTGCGCAACATGGTGGCGGCAGGTAGCGGGATCACTTTACTGCCAGCgctgg < 2:241764/143‑1 (MQ=255) tttGCGCGATCAGGCAATGGGTTTCTGT‑TTTGAAGCCGGGACGGATGAAGATACACACTTCCGCGCGACCAGCCTGGAAACTCTGCGCAACATGGTGGCGGCAGGCAGCGGGCTCACTTTACTGCCACCGCTGGCTGcgccgc > 2:775480/1‑143 (MQ=255) gcgcGATCAGGCAATGGGTTTCTGT‑TTTGAAGCCGGGGCGGATGAAGATACACACTTCCGCGCGACCAGCCTGGAAACTCTGCGCAACATGGTGGCGGCAGGTAGCGGGATCACTTTACTGCCAGCGCTGGCTGTGCCGCCgg < 1:767530/143‑1 (MQ=255) tCAGGCGATGGGTGTTTGT‑TTTGAAGCCGGGACGGAGGGAGATACACACTTCCGCGCGACCAGCCTGGAAACTCTGCGCAACATGGTGGCGGTAGGTAGCGGGATCACTTTACTGCCAGCGCTGGCTGTGCCGCCGGAGCTCa < 2:903398/143‑1 (MQ=255) tCAGGCAATGGGTTTCTGT‑TTTGAAGCCGGGGCGGATGAAGATACACACTTCCGCGCGACCAGCCTGGAAACTCTGCGCAACATGGTGGCGGCAGGTAGCGGGATCACTTTACTGCCAGCGCTGGCTGTGCCGCCGGAgcgcg > 1:633631/1‑142 (MQ=255) aaTGGGTTTCTGT‑TTTGAAGCCGGGGCGGATGAAGATACACACTTCCGCGCGACCAGCCTGGGAACTCTGCGCACCATGGTGGCGGCAGGTAGCGGGATCACTTTACGGCCAGCGCTGCCTGTGCCGCCGGAGCGCaagaccg > 2:269126/1‑138 (MQ=255) aaTGGGTTTCTGT‑TTTGAAGCCGGGGCGGATGAAGATACACACTTCCGCGCGACCAGCCTGGAAACTCTGCGCAACATGGTGGCGGCAGGTAGCGGGATCACTTTACTGCCAGCGCTGGCTGTGCCGCCGGAGCGCGAAcgcg > 1:156831/1‑143 (MQ=255) gggTTTCTGT‑TTTGAAGCCGGGGCGGATGAAGATACACACTTCCGCGCGACCAGCCTGGAAACTCTGCGCAACATGGTGGCGGCAGGTAGCGGGATCACTTTACTGCCAGCGCTGGCTGTGACGCCCGATCGCCAAcgcggtc > 2:95050/1‑140 (MQ=255) gTTTCTGT‑TTTGAAGCCGGGACGGATGAAGATACACACTTCCGCGCGACCAGCCTGGAAACTCTGCGCAACATGGTGGCGGCAGGTAGCGGGATCACGTTACTGCCAGCGCTGGCTGTGCCGCCGGAGCGCTAGcgcgccggg > 1:69462/1‑138 (MQ=255) cTGT‑TTTGGAGCCGGGGCGGATGAAGATACACACTTCCGCGCGACCAGCCTGGAAACTCTGCGCAACATGGTGGCGGCAGGTAGCGGGATCACTTTACTGCCAGCGCTGGCTGTGCCGCCGGCGCGCCAACGCGCTGGCgttg > 2:932560/1‑143 (MQ=255) ttgtGAAGCCGGGGCGGATGAAGATACACACTTCCGCGCGACCAGCCTGGAAACTCTGCGCAACAGGGTGGCGGCAGGTAGCGGGATCACTTTACTGCCAGCGCTGGCTGTGCCGCCGGAGCGCAAACGCGATGGGGTTGttt < 2:168604/140‑1 (MQ=255) ttGAGGCCGGGGCGGATGACGATACGCTGTGCCGCGCGACCAGCCCGGAAACTCTGCGCAACATGGTGGCGGCAGGTAGCGGGATCACTTTACTGCCAGCGCTGGCTGTGCCGCCGGAGCGCAAACGCGATGGGGTTGTTTAt < 1:586502/143‑1 (MQ=255) gAAGCCGGGGCGGATGAAGATACACACTTCCGCGCGACCAGCCTGGAAACTCTGCGCAACATGGTGGCGGCAGGTAGCGGGATCACTTTACTGCCAGCGCTGGCTGTGCCGCCGGAGCGCAAACGCGATGGGGGTGTTGATCt > 1:742186/1‑143 (MQ=255) gCCGGGGCGGATGAAGATACACACTTCCGCGCGACCAGCCTGGAAACTCTGCGCAACATGGTGGCGGCAGGTAGCGGGATCACTTTACTGCCAGCGCTGGCTGTGCCGCCGGAGCGCAAACGCGATGGGGTTGTTTATCTGcc > 1:237207/1‑143 (MQ=255) ggggCGGATGAAGTTACACACTTCCGCGCGCCCAGCCTGGAAACTCTGCGCAACATGGTGGCGGCAGGTAGCGGGATCACTTTACTGCCAGCGCTGGCTGTGCCGCCGGAGCGCAAACGCGATGGGGTTGTTTATCTGCCGTg < 1:88309/143‑1 (MQ=255) | TTGCTGGCTATCTATGAAGATCACCCGTGGGCGAACCGCGAATGCGTACCGATGGCCGATCTGGCAGGGGAAAAACTGCTGATGCTGGAAGATGGTCACTGTTTGCGCGATCAGGCAATGGGTTTCTGT‑TTTGAAGCCGGGGCGGATGAAGATACACACTTCCGCGCGACCAGCCTGGAAACTCTGCGCAACATGGTGGCGGCAGGTAGCGGGATCACTTTACTGCCAGCGCTGGCTGTGCCGCCGGAGCGCAAACGCGATGGGGTTGTTTATCTGCCGTG > NC_000913/4158985‑4159265 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |