| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_000913 | 657,533 | A→T | 6.9% | intergenic (+32/+22) | cspE → / ← crcB | transcription antiterminator and regulator of RNA stability/F(‑) channel |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 657,533 | 0 | A | T | 6.9% | 151.1 / 4.0 | 59 | intergenic (+32/+22) | cspE/crcB | transcription antiterminator and regulator of RNA stability/F(‑) channel |
| Reads supporting (aligned to +/- strand): ref base A (28/26); new base T (2/2); total (31/28) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.55e-01 | |||||||||||
CCAGACTAATGGTTTTAAAACTCTTGCTGAAGGTCAGCGCGTAGAGTTCGAAATCACTAACGGTGCCAAAGGCCCTTCTGCTGCAAACGTAATCGCTCTGTAAGATACGTCAGCAAGAATTCAAAACCCGCTTAATCAGCGGGTTTTTTTTGGTCTTTAGTGTGCGGTTGAGGCCGAAAACAGCCAGAATGCCAGTGCGGTCATGGCAAAAGACCCCAGAAGGTTGACGAAAACGTTCAGTAATGCCCAGCCAAAGCGGCCCTCTTGTAACAAAAAC > NC_000913/657399‑657675 | ccAGACTAATGGTTTTAAACCTCTTGCTGAAGGTCAGCGCGTAGAGTTCGAAATCACTAACGGTGCCAAAGGCCCTTCTGCTGCAAACGTAATCGCTCTGTAAGAGACGTCAGCAAGAATTCAAAACCCGCTGATTAAGCggg < 1:513631/143‑1 (MQ=255) cAGACTAATGGTTTTAAAACTCTTGCTGAAGGTCAGCGCGTAGAGTTCGAAATCACTAATGGTGTAAAAGGACATTATGCTGTAAACGTAATCGCTCTGTAAGATAAGTAAGAAAGAATTCAAAACACGCTTAATCAGCGGGt > 1:826614/1‑143 (MQ=255) gACTAATGGTTTTAAAAATCTTGCTCAAGGTCAGCGCGTAGAGTTCGAAACCACTAACGGTGCCAAAGGCCCTTCTGCTGCAAACGTACTCGCTCTGTAAGATACGTCAGCAAGAATTCAAAACCCGCTGATTAAGCCGGttt < 1:287134/143‑1 (MQ=255) aaTGGTTTTAAAACTCTTGCTGAAGGTCAGCGCGTAGAGTTTGAAATCACTAACGGTGCCAAAGGCCCTTCGGCTGCAAACGTAATCGCTCTGTAAGATACGTCAGCAAGAATTCAAAACCCGCTTAATCAGCGGGttttttt < 1:220481/143‑1 (MQ=255) aTGGTTTTAAAACTCTTGCTGAAGGTCAGCGCGTAGAGTTCGAAATCACTAACGGTGCCAAAGGCCCTTCTGCTGCAAACGTAATCGCTCTGTAAGATACGTCAGCAAGAATTCAAAACCCGCTTAATCAGCGGGtttttttt < 1:853544/143‑1 (MQ=255) aTGGTTTTAAAACTCTGGCTGAAGGTCAGCGCGTAGAGTTCGAAATCACTAACGGTGCCAAAGGCCCTTCTGCTGCAAACGTAATCGCTCTGTAAGATACGTCAGCAAGAATTCAAAACCCGCTTAATCAGCGGGtttttttt < 2:513007/143‑1 (MQ=255) tttAAAACTCTTGCTGAAGGTCAGCGCGTAGAGTTCGAAATCACTAACGGTGCCAAAGGCCCTTCTGCTGCAAACGTAATCGCTCTGTAAGATACGTCAGCCAGAATTCAAAACCCGCTTAATCAGCGGGGTTTTTTTGGtac > 2:634995/1‑141 (MQ=255) ttAAAACTCTTGCTGAAGGTCAGCGCGTAGAGTTCGAAATCACTAACGGTGCCAAAGGCCCTTCTGCTGCACACGTACTCGCTCTGTAAGATACGTCAGCAAGAATTCAAAACCCGCTTCATCACCGGGATCTTTTTGGTCtt > 2:748664/1‑143 (MQ=255) ttAAAACTCTTGCTGAAGGTCAGCGCGTAGAGTTCGAAATCACTAACGGTGCCAAAGGCCCTTCTGCTGCAAACGTAATCGCTCTGTAGGATACGTCAGCAAGAATTCAAAACCCGCTTAATCAGCGGGTTTTTTTTGGTCtt < 2:895948/143‑1 (MQ=255) ttAAAACTCTTGCTGAAGGTCAGCGCGTAGAGTTCGAAATCACTAACGGTGCCAAAGGCACTTCTGCTGCAAACGTAATCGCCCTGTAAGATACGTCAGCAAGAATTCAAAACCCGCATAATCAGCGCGCTTTTTCTgtgcta > 2:531007/1‑138 (MQ=255) aaCTCTTGCTGAAGGTCAGCGCGTAGAGTTCGAAATCACTAACGGTGCCAAAGGCCCTTCTGCTGCAAACGTAATCGCTCTGTAAGATACGTCAGCAAGAATTCAAAACCCGCTTAATCAGCGGGTTTTTTTTGGTCTTTAgt < 1:668648/143‑1 (MQ=255) gAAGGTCAGCGCGTAGAGTTCGAAATCACTAACGGTGCCAAAGGCCCTTCTGCTGCAAACGTAATCGCTCTGTAAGATACGTCAGCAAGAATTCAAAACCCGCTTAATCAGCGGGTTTTTTTTGGTCTTTAGTGTGCGGTTGa < 1:32695/143‑1 (MQ=255) gAAGGTCAGCGCGTAGAGTTCGAAATCACTAACGGTACCAAAGGCCCTTCTGCTGCAAACGTAATCGCTCTGTAAGATACGTCAGCAAGAATTCAAAACCCGCTTAATCAGCGGGTTTTTTTTGGTCTTTAGTGTGCGGTTGa < 2:282959/143‑1 (MQ=255) gAAGGTCAGCGCGTAGAGTTCGAAAACACTAACGGTGCCAAAGGCCCTTCTGCTGCAAACGTAATCGCTCTGTAAGATACGTCAGCAAGAATTCAAAACCCGCTTAATCAGCGGGTTTTTTTTGGTCTTTAGTGTGCGGTTGa < 1:30771/143‑1 (MQ=255) gAAGGTCAGCGCGTACAGTTCGAAATCACTAACGGGGCCAAAGGCCCTTCTGCTGCAAACGTAATCGCTCTGTAAGATACGTCAGCAAGAATTCAAAACCCGCGTAATCAGCGGGTTTTTTTTGGTCTTTAGTGTGCGGTTGa < 1:70686/143‑1 (MQ=255) gcgcGTAGAGTTCGAAATCACTAACGGTGCCAAAGGCCCTTCTGCTGCAAACGTAATCGCTCTGTAAGATACGTCAGCAAGAATTCAAAACCCGCTTAATCAGCGGGCTTTTTTTGGTCTTTAGTGTGCGGTTGAGACCGcaa > 1:204311/1‑143 (MQ=255) cgTAGAGTTCGAAATCACTAACGGTGCCAAAGGCCCTTCTGCTGCAAACGTAATCGCTCTGTAAGATACGTCAGCAAGAATTCAAAACCCGCTTAATCAGCGGGTTTTTTTTGGTCTTTAGTGTGCGGTTGAGGCCGAAAACa < 1:546295/143‑1 (MQ=255) agagTTCGAAATCACTAACGGTGCCAAAGGCCCTTCTGCTGCAAACGTAATCGCTCTGTAAGATACGTCAGCCAGAATTCAAAACCCGCTTAATCAGCGGGTGTTTTTTGGTCTTTAGGGTGCGGGTGAGGCCGAAAACAGcc > 1:820232/1‑143 (MQ=255) agTTCGAAATCACTAACGGTGCCAAAGGCCCTTCTGCTGCAAACGTAATCGCTCTGTAAGATACGTCAGCAAGAATTCAAAACCCGCTTAATCAGCGGGTTTTTTTTGGTCTTTAGTGTGCGGTTGAGGCCGAAAACAGCCAg < 2:507405/143‑1 (MQ=255) ttCGAAATCACTAACGGTGCCAAAGGCCCTTCTGCTGCAAACGTAATCGCTCTGTAAGATACGTCAGCAAGCATTCAGAACCCGCTTAATCAGCGGGTGTTTTTTGGTCTTTAGTGTGCGGTTGAGGTGGGAAACAGTCAGag > 2:606946/1‑142 (MQ=255) ttCGAAATCACTAACGGTGCCAAAGGCCCTTCTGCTGCAAACGTAATCGCTCTGTAAGATACGTCAGCAAGCATTCAAAACCCGCTTAATCAGCGGGTTTTTTTTGGTCTTTAGTGTGCGGTTGAGGCCGAAAACAGCCAGaa > 2:606953/1‑143 (MQ=255) ttCGAAATCACTAACGGTGCCAAAGGCCCTTCTGCTGCAAACGTAATCGCTCTGTAAGATACGTCAGCAAGAATTCCGCACCCGCTTACTCAGCGGGCTGTTTTTGGACTTTAGGGTGCGGTTGAGGCCGAAAACAGCTAGaa > 2:606952/1‑143 (MQ=255) ttCGAAATCACTAACGGTGCCAAAGGCCCTTCTGCTGCAAACGTAATCGCTCTGTAAGATACGTCAGCAAGAATTCAAAACCCGCATAATCAGCGGGTTTTTTTTGGTCTTTAGTGTGCGCTTGCGGCCGAGACCAGCCAGaa > 2:790418/1‑143 (MQ=255) gAAATCACTAACGGTGCCAAAGGCCCTTCTGCTGCAAACGTAATCGCTCTGTAAGATACGTCAGCAGGAATTCAAAACCCGCTTAATCAGCGGGTTTTTTTTGGTCCTTAGTGTGCGGATGAGGCCGAAAACCGCCAgcaaga > 1:189166/1‑138 (MQ=255) gAAATCACTAACGGTGCCAAAGGCCCTTCTGCTGCAAACGTAATCGCTCTGTAAGATACGTCAGCAAGAATTCAAAACCCGCTTAATCAGCGGGTTTTTTTTGGTCTTTAGTGTGCGGTTGAGGCCGAAAACAGCCAGCATGc > 1:651624/1‑143 (MQ=255) aaaTCACTAACGGTGCCAAAGGCCCTTCTGCTGCAAACGTAATCGCTCTGTAAGATACGTCAGCAAGAATTCAAAACCCGCTTAATCACGGGGGAAATGGTGGTGTTTAGTGAGCGGTTGAGGCCGAAAACAGCAAGacaggc > 2:614475/1‑138 (MQ=255) cTAACGGTGCCAAAGGCCCTTCTGCTGCAACCGTAATCGCTCTGTAAGATACGTCAGCAAGAATTCAAAACCCGCTTAATCAGCGGGTTTTTTTTGGTCTTTAGTGTGCGGTTGAGGCCGAAAACAGCCAGAATGCCAGTGCg < 2:397638/143‑1 (MQ=255) tAACGGTGCCAAAGGCCCTTCTGCTGCAAACGTAATCGCTCTGTAAGATACGTCAGCAAGAATTCAAAACCCGCTTAATCAGCGGGTTTTTTTTGGTCTTTAGTGTGCGGTTGAGGCCGAAAACAGCCAGAATGCCAGTGCgg > 2:824744/1‑143 (MQ=255) tAACGGTGCCAAAGGCCCTTCTGCTGCAAACGTAATCGCTCTGTAAGATACGTCAGCAAGAATTCAAAACCCGCTTAATCAGCGGGTGTTTTTTGGTCTTTAGTGTGGGGTTGAGGCCGAAAACGGCCAGAATGCCAGTGCgg > 1:232354/1‑143 (MQ=255) aCGGTGCCAAAGGCCCTTCTGCTGCAAACGTAATCGCTCTGTAAGATACGTCAGCAAGAATTCAAAACCCGCTTAATCAGCGGGTTCTTTTTGGTCTTTAGTGTGCGGTTGAGCCCGAAAACACGCAGCATGCCGGTGCGGTc > 2:3639/1‑143 (MQ=255) ggCCCTTCGGCTGCAAACGTAATCGCGCTGGAAGATACGTCAGCAAGAATTCAAAACCCGCTTAATCAGCGGGTTTTTTTTGGTCTTTAGTGTGCGGTTGAGGCCGAAAACAGCCAGAATGCCAGTGCGGTCATGGCAAAAGa < 1:9864/143‑1 (MQ=255) gCCCTTCTGCTGCAAACGTAATCGCTCTGTAAGATACGTCAGCAAGAATTCAAAACCCGCTTAATCAGCGGGTTTTTTTTGGTCTTTAGTGTGCGGTTGAGGCCGACGACAGCCAGACTGCCAGTGCCGTCCTTGCATAAgcc > 1:429695/1‑141 (MQ=255) tCTGCTGCAAACGTAATCGCTCTGTAAGATACGTCAGCAAGAATTCAAAACCCGCTTAATCAGCGGGTTTTTTTTGGTCTTTAGTGTGCGGTTGAGGCCGAAAACAGCCAGAATGCCAGTGCGGTCATGGCAAAAGACCCCAg > 2:244259/1‑143 (MQ=255) ctgctgCAAACGTAATCGCTCTGTAAGATACGTCAGCAAGAATTCAAAACCCGCTTAATCAGCGGGTTTTTTTTGGTCTTTAGTGTGCGGTTGAGGCCGAAAACAGCCAGAATGCCAGTGCGGTCATGGCAAAAGACCCCAGa > 1:430240/1‑143 (MQ=255) ctgctgCAAACGTAATCGCTCTGTAAGATACGTCAGCAAGAATTCAAAACCCGCTTAATCAGCGGGTTTTTGTTGGTCTTTAGTGTGCGGTTGAGCCCGAAAACAGCCAGAATGCCAGTGAGGTAATGGAACAAGagcagaga > 2:295691/1‑136 (MQ=255) gctgcAAACGTAATCGCTCTGTAAGATACGTCAGCAAGAATTCAAAACCCGCTTAATCAGCGGGTTTTTTTTGGTCTTTAGTGTGCGGTTGAGGCCGAAAACAGCCAGAATGCCAGTGCGGTCATGGCAAACGACCCCAGAAg > 1:871490/1‑143 (MQ=255) gTAATCGCTCTGTAAGATACGTCAGCAAGAATTCAAAACCCGCTTAATCAGCGGGTTTTTTTTGGTCTTTAGTGTGCGGTTGAGGCCGAAAACAGCCAGAATGCCAGTGCGGTCATGGCAAAAGACCCCAGAAGGTTGACGaa > 2:652933/1‑143 (MQ=255) tAATCGCGCGGTAAGATACGTCAGCAAGAATTCAAAACCCGCTTAATCAGCGGGTTTTTTTTGGTCTTTAGTGTGCGGTTGAGGCCGAAAACAGCCAGAATGCCAGTGCGGTCATGGCAAAAGACCCCAGAAGGTTGACGaaa < 1:814439/143‑1 (MQ=255) aTCGCTCTGTAAGTCACGTCAGGAAGAATTCAAAACCCGCTTAATCAGCGGGTTTTTTTTGGTCTTTAGTGTGCGGTTGAGGCCGAAAACAGCCAGAATGCCAGTGCTGTCATGGCAAAAGACCCCAGAAGGTTGACGAAAAc < 2:311320/143‑1 (MQ=255) tagCTCTGTAAGATACGTCAGCAAGAATTCAAAACCCGCTTAATCAGCGGGTTTTTTTTGGTCTTTAGTGTGCGGTTGAGGCCGAAAACAGCCAGAATGCCAGTGCGGTCATGGCAAAAGACCCCAGAAGGTTGACGAAAACg > 2:626459/3‑143 (MQ=255) tctGTAAGATACGTCAGCAAGAATTCAAAACCCGCTTAATCAGCGGGTTTTTTTTGGTCTTTAGTGTGCGTTTGGGGCCGAAAACAGCCAGAATGCCAGTGCGGTCATGGCAAAAGACCCCAGAAGGTTGACGAAAACGTTCa < 2:805140/143‑1 (MQ=255) tctGTAAGATACGTCAGCAAGAATTCAAAACCCGCTTAATCAGCGGGTTTTTTTTGGTCTTTAGTGTGCGGTTGAGGCCGAAAACAGCCAGAATGCCAGTGCGGTCATGGCAAAAGACCCCAGAAGGTTGACGAAAACGTTCa < 1:824744/143‑1 (MQ=255) ctGTATGTTGCGTTAGCAAGAATTTAAAACCCGCTTAATCAGCGGGTTTTTTTTGGTCTTGAGTGTGCGGTTGAGGCCGAAAACAGCCAGAATGCCAGTGCGGTCATGGCAAAAGACCCCAGAAGGTTGACGAAAACGTTCAg < 2:31601/143‑1 (MQ=255) aaGATACGTCAGCAAGAATTCAAAACCCGCTTAATCAGCGGGTTTTTTTTGGTCTTTAGTGGGCGGTTGAGGCCGAAAACAGCCAGAATGCCAGTGCGGTCATGGCAAAAGACCCCAGAAGGTTGACGAAAACGTTCAGTAAt < 1:596844/143‑1 (MQ=255) cAAGAATTCAAAACCCGCTTAATCAGCGGGTTTTTTTTGGTCTTTAGTGTGCGGTTGAGGCCGAAAACAGCCAGAATGCCAGTGCGGTCATGGCAAAAGACCCCAGAAGGTTGACGAAAACGTTCAGTAATGCCCAGCCAAAg > 1:795102/1‑143 (MQ=255) cAAGAATTCAAAACCCGCTTAATCAGCGGGTTTTTTTTGGTCTTTAGTGTGCGGTTGAGGCCGAAAACAGCCAGAATGCCAGTGCGGTCATGGCAAAAGACCCCAGAAGGTTGACGAAAACGTTCAGTAATGCCCAGCCAAAg > 1:207520/1‑143 (MQ=255) cAAGAATTCAAAACCCGCTTAATCAGCGGGTTTTTTTTGGTCTTTAGTGTGCGGTTGAGGCCGAAAACAGCCAGAATGCCAGTGCGGTCATGGCAAAAGACCCCAGAAGGTTGACGAAAACGTTCAGTAATGCCCAGCCAAAg > 2:699507/1‑143 (MQ=255) caaaaaaaaCCCGCTGATTAAGCGGGTTTTTTTTGGTCTTTAGTGTGCGGTTGAGGCCGAAAACAGCCAGAATGCCAGTGCGGTCATGGCAAAAGACCCCAGAAGGTTGACGAAAACGATCAGTAATACCCAGCCAAAGCGGc > 1:187306/6‑143 (MQ=255) caaaaaaaaCCCGCTGATTAAGCGGGTTTTTTTTGGTCTTTAGTGTGCGGCTGAGGCCGAAAACAGCCAGAATGCCAGTGCGGACATGGCAAAAGACCCCAGAAGGTTGACGAAAACGTACAGTAATGCCCAGCCAAAGCGGc > 1:82345/6‑143 (MQ=255) ttCAAAACCCGCTTAATCAGCGGGTTTTTTTTGGTCTTTAGTGTGCGGTTGAGGCCGAAAACAGCCAGAATGCCAGTGCGGTCATGGCAAAAGACCCCAGAAGGTTGACGAAAACGTTCAGTAATGCCCAGCCAACGCGGccc > 1:672072/1‑143 (MQ=255) aaaCCCGCTTAACCAGCGGGTGTTTTTTGGTCTGTAGTGTGCGGTTGAGGCCGAAAACAGCCAGAATGCCAGTGCGGTCATGGCAAAAGACCCCAGAAGGTTGACGAAAACGTTCAGTAATGCCCAGCCAAAGCGGCCCTCtt < 2:20479/143‑1 (MQ=255) aaCCCGTGTAATCGGCGAGTTGTTTTTGGTCTGTAGTGTGCGGTTGAGGCCGAAAACAGCCAGAATGCCAGTGCGGTCATGGCAAAAGACCCCAGAAGGTTGACGAAAACGTTCAGTAATGCCCAGCCAAAGCGGCCCTCTTg < 2:847474/143‑1 (MQ=255) aaCCCGCTTAATCAGCGGGTTTTTTTTGGTCTTTAGTGTGCGGTTGAGGCCGAAAACAGCCAGAATGCCAGTGCGGTCATGGCAAACGACCCCAGAAGGTTGACGAAAACGTTCAGTAATGCACAGCCAAAGCGGCCCTCTTg > 1:318915/1‑143 (MQ=255) aaCCCGCTTAATCAGCGGGTTTTTTTTGGTCTTTAGTGTGCGGTTGAGGCCGAAAACAGCCAGAATGCCAGTGCGGTCATGGCAAAAGACCCCAGAAGGTTGACGAAAACGTTCAGTAATGCCCAGCCAAAGCGGCCCTCCTg > 1:318842/1‑143 (MQ=255) ccccGCTTAATCAGCGGGGTTTTTTTGGTCTTTAGTGTGCGGTTGAGGCCGAAAACAGCCAGAATGCCAGTTCGGTCATGGCAAAAGACCCCAGAAGGTTGACGAAAACGTTCAGTAATGCCCAGCCAAAGCGGCCCTCTTGt < 1:119011/142‑1 (MQ=255) cTTAATCAGCGGGTTTTTTTTGGTCTTTAGTGTGCGGTTGAGGCCCAAAACAGCCAGAATGCCAGTGCGGTCATGGCAAAAGACCCCAGAAGGTTGACGAAAACGTTCAGTAATGCCCAGCCAAAGCGGCCCTCTTGTAACaa < 1:787776/143‑1 (MQ=255) ttAATCGGCGGGTTGTTTGGGGTCTTTAGTGTGCGGGTGAGGCCGAAAACAGCCAGAATGCCAGTGCGGGCATGGCAAAAGACCCCAGAAGGTTGACGAAAACGTTTAGTAATGCCCAGCCAAAGCGGCCCTCTTGTGACaaa < 1:606952/143‑1 (MQ=255) ttAATCAGCGGGTTTTTTTTGGTCTTTAGTGTGCGGTTGAGGCCGAAAACAGCCAGAATGCCAGTGCGGTCATGGCAAAAGACCCCAGAAGGTTGACGAAAACGTTTAGTAATGCCCAGCCAAAGCGGCCCTCTTGTGACaaa < 1:606946/143‑1 (MQ=255) ttAATCAGCGGGTTTTTTTTGGTCTTTAGTGTGCGGTTGAGGCCGAAAACAGCCAGAATGCCAGTGCGGTCATGGCAAAAGACCCCAGAAGGTTGACGAAAACGTTCAGTAATGCCCAGCCAAAGCGGCCCTCTTGTGACaaa < 1:606953/143‑1 (MQ=255) aTCAGCGGGTTTTTTTTGGTCTTTAGTGTGCAGTTGAGGCCGAAAACAGCCAGAATGCCAGTGCGGTGATGGCAAAAGACCCCAGAAGGTTGACGAAAACGTTCAGTAATGCCCAACCAAAGCGGCCCTCTTGTACCaaaacc > 1:65601/1‑141 (MQ=255) | CCAGACTAATGGTTTTAAAACTCTTGCTGAAGGTCAGCGCGTAGAGTTCGAAATCACTAACGGTGCCAAAGGCCCTTCTGCTGCAAACGTAATCGCTCTGTAAGATACGTCAGCAAGAATTCAAAACCCGCTTAATCAGCGGGTTTTTTTTGGTCTTTAGTGTGCGGTTGAGGCCGAAAACAGCCAGAATGCCAGTGCGGTCATGGCAAAAGACCCCAGAAGGTTGACGAAAACGTTCAGTAATGCCCAGCCAAAGCGGCCCTCTTGTAACAAAAAC > NC_000913/657399‑657675 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |